genome.fa.s112.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  44  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9194052--9194087	2	18.0	2	100	0	72	50	0	0	50	1.00
9194702--9194742	20	2.0	20	86	9	57	29	7	7	56	1.54
9196460--9196484	2	12.5	2	100	0	50	0	48	0	52	1.00
9196484--9196517	2	17.0	2	87	0	50	44	0	5	50	1.26
9199994--9200028	18	1.9	18	88	0	52	17	2	0	80	0.84
9201697--9201797	3	35.0	3	67	15	52	31	6	2	58	1.40
9209037--9209073	16	2.2	18	85	9	51	45	0	0	54	1.00
9209981--9210011	2	15.5	2	100	0	62	51	0	0	48	1.00
9211432--9211563	63	2.1	62	95	2	237	53	1	15	28	1.51
9212463--9212498	2	18.0	2	100	0	72	50	0	0	50	1.00
9217542--9217606	30	2.2	30	82	0	85	55	1	0	43	1.09
9221898--9221979	42	2.0	42	100	0	164	41	24	2	31	1.68
9223193--9223226	17	2.0	17	100	0	68	70	0	17	11	1.16
9223171--9223222	25	2.1	24	85	3	68	76	0	13	9	1.01
9224208--9224607	41	9.7	41	80	3	399	24	12	19	44	1.84
9224201--9224607	83	4.9	82	81	2	404	24	12	19	43	1.85
9224208--9224603	124	3.2	124	78	5	399	24	11	19	44	1.84
9225580--9225623	4	11.0	4	80	0	52	20	2	4	72	1.13
9225701--9225764	25	2.5	27	75	12	73	43	4	10	40	1.61
9225707--9225763	26	2.3	23	80	14	60	43	5	10	40	1.62
9226033--9226143	57	1.9	59	85	3	154	55	6	12	25	1.60
9226822--9226860	19	2.1	19	90	0	60	46	2	12	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9235368--9235406	20	2.0	20	100	0	78	41	25	28	5	1.77
9238968--9239007	18	2.0	21	86	13	59	40	5	50	5	1.46
9239203--9239233	13	2.5	13	94	5	55	48	6	0	45	1.28
9239218--9239276	22	2.8	22	82	12	70	42	1	1	54	1.20
9242321--9242363	16	2.6	16	85	3	50	46	0	0	53	1.00
9246612--9246745	69	1.9	70	89	3	207	38	0	4	56	1.19
9270194--9270241	23	2.2	21	81	7	51	20	4	10	64	1.41
9270462--9270503	20	2.1	21	86	8	61	28	11	11	47	1.76
9272366--9272414	25	2.0	24	92	4	80	51	12	4	32	1.58
9272362--9272432	19	3.3	21	75	24	76	56	9	4	29	1.51
9272364--9272436	25	3.2	24	70	25	68	56	9	4	30	1.50
9272516--9272593	20	3.8	20	86	9	113	48	11	6	33	1.65
9272716--9272767	17	3.1	17	72	5	52	73	13	3	9	1.23
9272731--9272788	23	2.5	23	88	2	80	65	17	5	12	1.43
9273840--9273899	6	9.8	6	81	3	57	66	5	1	26	1.21
9273853--9273936	18	4.6	18	70	7	62	65	10	3	20	1.38
9274225--9274464	43	5.6	43	83	5	243	40	18	11	30	1.85
9274195--9274463	86	3.1	85	76	7	249	41	18	11	28	1.85
9274224--9274463	129	1.9	129	80	3	286	40	18	10	30	1.85
9274637--9274661	13	1.9	13	100	0	50	40	12	24	24	1.88
9275541--9275596	6	10.2	6	74	14	50	1	14	1	82	0.84
9275548--9275596	14	3.3	15	78	16	50	2	14	2	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9278401--9278450	9	5.4	9	80	2	55	2	14	2	82	0.86
9279642--9279900	133	2.0	131	81	9	312	50	12	8	28	1.70
9280224--9280272	21	2.3	21	96	0	89	61	14	6	18	1.53
9281665--9281712	3	16.0	3	91	8	80	66	0	2	31	1.03
9281720--9281761	21	1.9	23	90	9	70	78	7	2	11	1.04
9281743--9281779	17	2.2	17	90	0	56	83	2	5	8	0.88
9283509--9283534	13	2.0	13	100	0	52	38	0	30	30	1.58
9286692--9286729	16	2.4	16	95	0	67	60	5	10	23	1.50
9287803--9287865	20	3.3	20	71	24	64	50	9	4	34	1.56
9287805--9287866	18	3.4	18	72	16	65	51	9	4	33	1.56
9287807--9287863	16	3.3	16	71	17	51	50	10	5	33	1.59
9288033--9288067	16	2.3	15	90	5	52	65	5	5	22	1.36
9288122--9288301	81	2.2	82	84	3	220	48	11	6	33	1.65
9288122--9288304	41	4.5	41	84	4	217	48	10	6	33	1.64
9288409--9288478	17	4.1	16	71	10	50	70	12	2	14	1.29
9290718--9290758	21	2.0	21	90	0	64	58	9	9	21	1.59
9291881--9291949	16	4.1	16	74	18	61	50	11	7	30	1.65
9291879--9291937	18	3.3	18	77	17	68	50	11	5	32	1.61
9292816--9292903	6	14.3	6	77	4	59	64	6	4	23	1.37
9296042--9296077	18	1.9	18	88	5	54	63	0	19	16	1.30
9297615--9297694	7	11.7	7	74	21	55	76	0	8	15	1.02
9297605--9297687	35	2.3	35	80	17	100	75	0	8	15	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9297614--9297703	28	3.2	26	79	14	76	75	0	10	14	1.04
9297612--9297703	35	2.7	33	75	18	91	76	0	9	14	1.03
9297624--9297691	19	3.7	19	72	16	63	75	0	10	14	1.06
9298144--9298195	7	7.7	7	79	16	65	75	0	11	13	1.06
9298650--9298689	14	2.7	15	84	7	64	82	0	5	12	0.82
9298651--9298721	19	3.6	19	79	11	81	78	0	7	14	0.94
9298666--9298719	30	1.9	29	85	14	78	77	0	7	14	0.97
9298652--9298721	7	10.6	7	76	14	51	78	0	7	14	0.95
9298672--9298731	27	2.2	26	82	11	68	76	0	11	11	1.02
9298666--9298721	26	2.2	26	87	12	80	78	0	7	14	0.95
9297463--9299022	508	3.0	517	90	4	2455	46	9	15	28	1.77
9299942--9300033	32	2.9	31	75	3	85	16	16	16	51	1.77
9299996--9300195	103	1.9	103	90	0	319	20	19	12	48	1.80
9300521--9300614	4	23.8	4	74	17	81	21	3	0	75	0.94
9302348--9302379	3	10.7	3	100	0	64	65	0	0	34	0.93
9303923--9303970	22	2.1	24	85	11	66	33	0	4	62	1.14
9311251--9311629	194	2.0	194	93	0	650	25	24	14	35	1.94
9317496--9317540	22	2.1	21	84	12	56	48	0	6	44	1.29
9318669--9318705	19	2.1	19	85	10	51	59	0	16	24	1.37
9318835--9318879	23	1.9	24	86	4	65	62	4	0	33	1.15
9318839--9318875	20	1.9	18	89	10	56	59	5	0	35	1.20
9319495--9319548	21	2.6	21	82	8	65	20	0	7	72	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9319495--9319542	20	2.4	20	89	0	69	18	0	8	72	1.08
9333354--9333410	29	2.0	29	86	10	82	38	8	3	49	1.51
9340032--9340069	19	2.0	19	94	0	67	36	2	5	55	1.37
9340372--9340426	18	3.2	18	85	14	73	14	0	7	78	0.96
9340380--9340425	6	7.7	6	88	9	58	15	0	8	76	1.02
9340422--9340470	21	2.2	23	85	7	66	4	2	14	79	0.97
9340431--9340455	13	1.9	13	100	0	50	0	0	16	84	0.63
9341971--9342046	37	2.1	37	87	0	107	47	3	0	48	1.20
9342182--9342230	24	2.1	23	85	7	64	53	0	2	44	1.12
9342266--9342330	33	1.9	34	87	3	96	36	7	4	50	1.52
9342484--9342529	18	2.6	18	83	13	60	26	15	0	58	1.37
9346153--9346190	19	2.0	19	90	10	60	60	15	5	18	1.53
9346991--9347024	18	1.9	18	88	5	52	61	23	5	8	1.47
9347948--9348137	43	4.4	42	77	11	145	34	20	13	32	1.91
9348466--9348539	9	8.6	9	73	11	66	41	5	24	28	1.77
9348468--9348512	24	2.0	22	86	8	63	42	6	24	26	1.79
9348487--9348536	18	2.8	18	96	3	93	40	6	26	28	1.79
9353203--9353245	16	2.6	16	85	7	50	41	0	4	53	1.21
9362362--9362402	17	2.5	16	88	7	64	51	2	0	46	1.14
9362679--9362732	23	2.4	22	75	15	56	44	0	1	53	1.11
9362745--9362795	19	3.0	17	81	15	61	54	1	0	43	1.11
9363991--9364055	29	2.2	30	78	8	80	50	0	1	47	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9364409--9364442	16	2.1	16	88	0	50	82	5	0	11	0.83
9364600--9364665	27	2.5	26	80	11	71	78	3	6	12	1.04
9364593--9364665	8	8.5	8	74	14	56	78	2	5	13	1.04
9365684--9365732	16	3.1	16	79	8	55	32	2	0	65	1.04
9370323--9370356	16	2.2	15	89	5	50	38	0	2	58	1.13
9370351--9370406	27	2.1	27	86	0	76	50	17	8	23	1.74
9376119--9376172	24	2.2	24	87	6	74	29	1	1	66	1.12
9376118--9376162	24	1.9	24	95	4	83	33	2	4	60	1.29
9376138--9376211	30	2.4	32	78	15	93	27	0	2	70	1.01
9376978--9377013	15	2.4	15	95	0	63	61	2	8	27	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195