genome.fa.s112.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  95  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17344694--17344718	12	2.1	12	100	0	50	8	28	56	8	1.57
17347967--17348021	26	2.1	26	96	0	101	27	20	23	29	1.99
17351542--17351594	26	2.0	26	92	0	88	26	18	24	30	1.98
17351790--17351839	26	1.9	26	95	0	91	30	22	24	24	1.99
17352689--17352741	26	2.0	26	100	0	106	26	20	26	26	1.99
17353292--17353608	159	2.0	159	79	2	341	22	28	29	19	1.98
17353157--17358560	900	6.2	835	80	9	4594	25	24	24	25	2.00
17355965--17356017	26	2.0	26	100	0	106	26	20	26	26	1.99
17354179--17358886	900	5.2	899	86	2	6305	25	24	25	25	2.00
17356865--17356917	26	2.0	26	100	0	106	26	20	26	26	1.99
17357771--17357820	26	1.9	26	100	0	100	28	20	26	26	1.99
17358675--17358725	26	2.0	26	88	7	77	31	17	23	27	1.97
17359769--17359818	26	1.9	26	91	0	82	30	18	24	28	1.97
17361542--17361594	26	2.0	26	89	7	81	26	15	26	32	1.95
17361922--17361974	26	2.0	26	100	0	106	26	20	26	26	1.99
17361457--17362166	380	1.9	380	87	1	1039	23	28	29	18	1.98
17363635--17363687	26	2.0	26	92	0	88	26	16	26	30	1.97
17364524--17364574	26	2.0	26	92	0	84	27	15	29	27	1.96
17365416--17365468	26	2.0	26	96	0	97	28	20	24	26	1.99
17363325--17371470	900	9.1	898	85	4	10191	25	24	24	25	2.00
17366316--17366368	26	2.0	26	92	0	88	26	16	26	30	1.97
17368003--17368035	11	3.0	11	83	16	50	18	36	27	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17368966--17369017	25	2.0	26	96	3	97	26	19	26	26	1.99
17369841--17369912	26	2.8	25	89	8	108	30	18	23	27	1.97
17368099--17371470	909	3.7	896	83	6	4207	25	23	24	26	2.00
17370818--17372117	647	2.0	649	87	2	1876	25	21	25	28	1.99
17374780--17374858	26	3.0	26	84	0	113	29	18	24	27	1.98
17375708--17375760	26	2.0	26	92	0	88	30	20	22	26	1.98
17373027--17378226	902	5.8	900	82	7	6329	25	24	24	25	2.00
17378271--17378323	26	2.0	26	88	0	79	30	18	22	28	1.98
17377410--17379010	785	2.0	806	84	5	2144	25	23	24	26	2.00
17379176--17379226	26	2.0	26	96	0	93	27	17	29	25	1.98
17378232--17380101	902	2.1	902	88	1	2737	24	24	24	25	2.00
17380931--17380983	26	2.0	26	96	0	97	28	20	24	26	1.99
17381837--17381915	26	3.0	26	92	0	131	25	20	27	26	1.99
17380931--17382814	925	2.0	930	89	0	2853	25	24	24	25	2.00
17382762--17382814	26	2.0	26	92	0	88	26	16	26	30	1.97
17383353--17383403	26	2.0	26	84	0	66	31	11	25	31	1.92
17382907--17389822	895	7.9	849	81	8	6305	25	24	24	25	2.00
17385976--17386028	26	2.0	26	100	0	106	26	20	26	26	1.99
17386876--17386928	26	2.0	26	96	0	97	26	18	26	28	1.98
17388631--17388683	26	2.0	26	92	0	88	28	22	24	24	2.00
17391183--17391234	26	2.0	25	92	3	86	28	21	25	25	1.99
17389002--17392232	833	3.8	838	83	8	3507	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17392074--17392125	26	2.0	25	85	10	70	26	21	25	26	1.99
17392388--17392440	26	2.0	26	92	0	88	30	20	22	26	1.98
17393274--17393325	26	2.0	25	85	10	70	26	21	25	26	1.99
17394863--17394913	26	2.0	26	92	0	84	31	19	23	25	1.98
17395286--17395335	26	1.9	26	87	0	73	26	12	8	54	1.64
17395756--17395808	26	2.0	26	88	0	79	28	22	22	26	1.99
17397277--17397329	26	2.0	26	88	0	79	26	22	22	28	1.99
17398168--17398218	26	2.0	26	92	0	84	29	17	23	29	1.97
17399073--17399125	26	2.0	26	92	0	88	26	20	26	26	1.99
17396915--17408091	891	12.5	901	84	5	13679	25	24	24	25	2.00
17399975--17400026	25	2.0	26	96	3	97	26	21	25	26	1.99
17404439--17404491	26	2.0	26	96	0	97	26	18	26	28	1.98
17407976--17408029	26	2.1	26	92	0	90	29	20	25	24	1.99
17407318--17408848	773	2.0	772	88	1	2284	26	23	23	26	2.00
17412247--17412299	26	2.0	26	85	7	72	24	20	24	30	1.99
17413143--17413193	26	2.0	26	96	0	93	29	25	15	29	1.96
17417531--17417583	26	2.0	26	88	0	79	28	22	22	26	1.99
17414816--17417945	916	3.5	881	78	11	3190	26	24	23	25	2.00
17419972--17420024	26	2.0	26	85	0	70	28	24	18	28	1.98
17418222--17421361	893	3.5	890	86	5	4121	26	24	24	25	2.00
17420867--17420917	26	2.0	26	88	0	75	27	25	15	31	1.96
17421556--17421609	26	2.1	26	100	0	108	27	25	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17420672--17422055	693	2.0	693	87	1	1995	23	25	25	25	2.00
17423328--17423380	26	2.0	26	92	0	88	26	22	20	30	1.98
17424227--17424278	26	2.0	25	92	3	86	25	25	21	28	1.99
17421371--17433484	900	13.8	892	80	8	9895	25	25	24	25	2.00
17423964--17431756	898	9.0	835	76	12	5610	25	25	24	25	2.00
17424044--17433483	898	10.8	827	73	13	3280	25	25	24	25	2.00
17426784--17426836	26	2.0	26	96	0	97	26	24	20	28	1.99
17429432--17429484	26	2.0	26	96	0	97	28	26	18	26	1.98
17427677--17433483	901	6.5	898	84	5	7227	25	24	24	25	2.00
17431175--17431227	26	2.0	26	92	0	88	28	24	20	26	1.99
17432084--17432134	26	2.0	26	96	0	93	29	29	13	27	1.94
17432912--17434075	592	2.0	592	87	1	1688	24	24	25	26	2.00
17434480--17434558	26	3.0	26	98	0	149	27	26	18	26	1.98
17435411--17435463	26	2.0	26	92	0	88	26	22	20	30	1.98
17437181--17437233	26	2.0	26	96	0	97	30	24	16	28	1.97
17437207--17439405	714	3.1	706	87	3	3103	26	24	23	25	2.00
17439488--17439540	26	2.0	26	96	0	97	28	26	18	26	1.98
17440389--17440439	26	2.0	26	96	0	93	25	29	17	27	1.98
17438717--17441350	881	3.0	867	85	5	3498	26	25	23	24	2.00
17441266--17441318	26	2.0	26	92	0	88	24	24	22	28	2.00
17442046--17442098	26	2.0	26	100	0	106	30	26	16	26	1.97
17441683--17444802	858	3.6	861	85	5	3915	25	25	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17443792--17443844	26	2.0	26	92	0	88	28	28	16	26	1.97
17442536--17444802	888	2.5	884	86	3	3161	25	25	23	24	2.00
17445366--17445418	26	2.0	26	92	0	88	30	24	18	26	1.98
17446268--17446319	26	2.0	26	96	0	95	26	25	19	28	1.98
17447095--17447147	26	2.0	26	96	0	97	26	24	20	28	1.99
17448887--17448936	26	1.9	26	95	0	91	26	24	20	30	1.98
17446587--17452533	897	6.6	899	86	4	7814	25	25	24	24	2.00
17449788--17449840	26	2.0	26	92	0	88	26	22	20	30	1.98
17450698--17450768	26	2.7	26	93	0	124	28	25	16	29	1.97
17451602--17451654	26	2.0	26	92	0	88	28	24	18	28	1.98
17454965--17455017	26	2.0	26	92	0	88	28	24	20	26	1.99
17455852--17455904	26	2.0	26	89	7	81	32	26	15	26	1.95
17452684--17461200	899	9.6	889	81	7	9189	25	24	24	25	2.00
17456751--17456803	26	2.0	26	96	0	97	28	26	18	26	1.98
17457648--17457697	26	1.9	26	95	0	91	28	26	18	28	1.98
17458542--17458594	26	2.0	26	88	0	79	22	26	20	30	1.98
17452684--17459719	899	7.9	892	86	4	9367	25	24	24	25	2.00
17459437--17459489	26	2.0	26	96	0	97	26	24	20	28	1.99
17460277--17460329	26	2.0	26	89	7	81	26	20	22	30	1.98
17460459--17462223	825	2.1	824	87	1	2536	25	25	24	24	2.00
17462643--17462695	26	2.0	26	96	0	97	26	24	20	28	1.99
17463546--17463595	26	1.9	26	91	0	82	26	22	20	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17463791--17463843	26	2.0	26	85	0	70	26	22	22	28	1.99
17466470--17466522	26	2.0	26	92	0	88	24	24	20	30	1.99
17465599--17484155	864	20.7	893	72	14	9474	25	24	23	25	2.00
17463824--17473525	894	11.0	861	81	9	9993	25	25	24	25	2.00
17470820--17470870	26	2.0	26	100	0	102	25	27	19	27	1.99
17472597--17472649	26	2.0	26	89	7	81	30	26	18	24	1.98
17474746--17474798	26	2.0	26	92	0	88	26	26	20	26	1.99
17475643--17475695	26	2.0	26	92	0	88	30	26	16	26	1.97
17473892--17484155	897	11.7	894	83	5	11843	26	24	23	25	2.00
17478302--17478354	26	2.0	26	92	0	88	30	26	16	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195