genome.fa.s112.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  114  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19905609--19905660	26	2.0	25	92	3	86	28	25	17	28	1.97
19906477--19906526	26	1.9	26	91	0	82	24	24	24	28	2.00
19908210--19908262	26	2.0	26	92	0	88	28	24	20	26	1.99
19909103--19909155	26	2.0	26	89	7	81	30	22	18	28	1.98
19910007--19910059	26	2.0	26	92	0	88	24	24	24	26	2.00
19907417--19921434	898	15.7	892	78	9	12872	25	24	24	25	2.00
19911024--19911075	26	2.0	26	96	0	95	28	26	17	26	1.97
19912780--19912832	26	2.0	26	96	0	97	26	24	22	26	2.00
19913679--19913729	26	2.0	26	96	0	93	29	29	13	27	1.94
19914576--19914628	26	2.0	26	88	0	79	24	26	18	30	1.98
19915463--19915515	26	2.0	26	92	0	88	28	26	20	24	1.99
19919038--19919090	26	2.0	26	92	0	88	30	26	16	26	1.97
19920696--19920748	26	2.0	26	89	7	81	28	24	16	30	1.97
19920985--19921881	447	2.0	446	90	1	1420	29	21	19	28	1.98
19922037--19922089	26	2.0	26	96	0	97	28	26	18	26	1.98
19922943--19922993	26	2.0	26	96	0	93	31	25	15	27	1.96
19923842--19923894	26	2.0	26	88	0	79	30	24	16	28	1.97
19924746--19924801	26	2.2	26	93	0	94	32	25	16	26	1.96
19921431--19926000	904	5.1	902	85	3	5848	26	24	23	25	2.00
19925648--19925700	26	2.0	26	96	0	97	24	26	22	26	2.00
19926982--19929537	903	2.8	899	86	2	3464	25	24	23	25	2.00
19929492--19929544	26	2.0	26	82	7	63	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19929333--19929694	185	2.0	185	83	2	467	20	29	27	21	1.98
19930557--19930609	26	2.0	26	96	0	97	28	26	18	26	1.98
19931452--19931504	26	2.0	26	96	0	97	26	24	20	28	1.99
19929677--19932221	895	2.8	901	88	4	3833	25	25	23	25	2.00
19932197--19932247	26	2.0	26	100	0	102	31	29	11	27	1.92
19932521--19932573	26	2.0	26	88	0	79	28	22	18	30	1.98
19934173--19934252	26	3.1	26	98	0	151	27	27	18	26	1.98
19935092--19935144	26	2.0	26	96	0	97	26	24	20	28	1.99
19936846--19936898	26	2.0	26	92	7	90	26	22	22	28	1.99
19934225--19939337	868	5.8	861	81	8	5380	25	24	23	25	2.00
19938591--19940073	744	2.0	737	88	3	2185	26	24	22	26	2.00
19941996--19942045	26	1.9	26	100	0	100	28	26	18	28	1.98
19942787--19942817	12	2.6	12	100	0	62	22	19	41	16	1.89
19943811--19943863	26	2.0	26	96	0	97	26	24	20	28	1.99
19939296--19945381	893	6.8	901	85	4	7609	25	24	24	25	2.00
19944706--19944757	26	2.0	26	88	0	77	32	19	19	28	1.96
19946210--19946261	26	2.0	26	96	0	95	32	23	17	26	1.96
19947103--19947155	26	2.0	26	100	0	106	26	26	20	26	1.99
19945503--19947860	884	2.6	885	86	3	3293	27	24	22	25	2.00
19948613--19948665	26	2.0	26	96	0	97	26	28	20	24	1.99
19951240--19951292	26	2.0	26	85	0	70	30	24	16	28	1.97
19947935--19957311	856	10.7	854	78	10	8771	25	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19952087--19952139	26	2.0	26	100	0	106	26	26	20	26	1.99
19953854--19953906	26	2.0	26	96	0	97	26	24	20	28	1.99
19952992--19957312	893	4.9	898	85	4	5594	25	24	24	25	2.00
19954747--19954799	26	2.0	26	92	0	88	28	26	16	28	1.97
19954880--19954912	11	3.0	11	95	0	57	18	33	36	12	1.88
19956529--19956578	26	1.9	26	91	0	82	24	24	20	32	1.98
19958174--19959607	702	2.0	703	89	2	2171	26	23	22	26	2.00
19959740--19959790	26	2.0	26	96	0	93	27	27	19	25	1.99
19960500--19960552	26	2.0	26	100	0	106	26	26	20	26	1.99
19961401--19961453	26	2.0	26	96	0	97	26	24	20	28	1.99
19962303--19962355	26	2.0	26	96	0	97	26	22	22	28	1.99
19962884--19962935	26	2.0	26	92	0	86	30	25	19	25	1.98
19964992--19965044	26	2.0	26	92	0	88	28	28	18	24	1.98
19960209--19971179	903	12.2	895	82	5	12547	25	24	24	25	2.00
19965888--19965940	26	2.0	26	92	0	88	30	26	16	26	1.97
19966785--19966837	26	2.0	26	92	0	88	26	22	20	30	1.98
19967688--19967737	26	1.9	26	95	0	91	22	22	24	32	1.98
19960214--19984019	900	26.1	903	75	10	16095	25	24	24	25	2.00
19968592--19968644	26	2.0	26	96	0	97	30	26	15	28	1.96
19969474--19969526	26	2.0	26	96	0	97	28	22	20	28	1.99
19970385--19970437	26	2.0	26	96	0	97	24	26	22	26	2.00
19970411--19972630	716	3.1	712	86	5	3060	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19971134--19972607	743	2.0	738	89	2	2244	26	24	23	26	2.00
19972682--19972733	26	2.0	26	96	0	95	26	26	21	25	1.99
19973571--19973623	26	2.0	26	92	0	88	26	26	20	26	1.99
19973566--19975057	742	2.0	727	89	2	2245	26	24	23	26	2.00
19975199--19975251	26	2.0	26	88	0	79	30	24	18	26	1.98
19976090--19976142	26	2.0	26	88	0	79	32	24	16	26	1.97
19977893--19977945	26	2.0	26	88	0	79	32	24	16	26	1.97
19978783--19978835	26	2.0	26	92	0	88	30	26	16	26	1.97
19979683--19979734	26	2.0	26	88	3	79	26	23	23	26	2.00
19983411--19984626	607	2.0	607	90	0	1898	29	23	21	25	1.99
19985662--19985714	26	2.0	26	92	0	88	26	22	22	28	1.99
19986553--19986604	26	2.0	25	88	3	77	26	23	19	30	1.98
19987447--19987499	26	2.0	26	96	0	97	26	20	20	32	1.98
19984020--19989149	894	5.8	888	84	4	6372	25	24	23	26	2.00
19994904--19994959	26	2.2	26	93	0	94	26	23	21	28	1.99
19995805--19995860	26	2.2	26	86	0	76	35	21	17	25	1.95
19996682--19996789	26	4.2	26	93	0	180	28	25	19	25	1.99
19997621--19997697	26	3.0	26	90	0	118	28	25	18	27	1.98
19998537--19998589	26	2.0	26	92	0	88	26	22	20	30	1.98
19998378--19998794	184	2.3	185	83	4	527	22	28	27	21	1.99
19998722--19998772	26	2.0	26	88	0	75	31	27	13	27	1.94
19998748--20000233	721	2.1	710	89	3	2257	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20000337--20000389	26	2.0	26	96	0	97	24	26	22	26	2.00
19994839--19998588	906	4.1	904	78	10	3450	26	25	23	25	2.00
19999461--20017514	905	19.9	901	76	10	13578	25	24	24	25	2.00
20005883--20005908	11	2.4	11	100	0	52	19	38	30	11	1.87
20006991--20007043	26	2.0	26	92	0	88	26	22	20	30	1.98
20007438--20007490	26	2.0	26	85	0	70	30	20	18	30	1.97
20010496--20010548	26	2.0	26	92	7	90	26	26	20	26	1.99
20007860--20017475	891	10.9	889	83	6	10787	25	24	23	25	2.00
20011389--20011439	26	2.0	26	88	0	75	31	23	15	29	1.95
20014904--20014956	26	2.0	26	88	0	79	30	24	16	28	1.97
20015768--20015846	26	3.0	26	98	0	149	25	26	20	27	1.99
20016688--20016740	26	2.0	26	92	0	88	26	22	20	30	1.98
20017868--20019670	760	2.4	760	96	0	3302	26	24	23	25	2.00
20019768--20019817	26	1.9	26	100	0	100	22	30	20	28	1.98
20021506--20021557	26	2.0	26	96	0	95	26	25	19	28	1.98
20022407--20022459	26	2.0	26	85	0	70	26	26	20	26	1.99
20024636--20024688	26	2.0	26	96	0	97	28	26	18	26	1.98
20027505--20027557	26	2.0	26	85	0	70	28	22	22	26	1.99
20028405--20028457	26	2.0	26	100	0	106	26	26	20	26	1.99
20024887--20030081	900	5.8	884	86	4	6736	25	24	24	25	2.00
20029295--20031685	718	3.3	717	91	1	3666	25	23	23	26	2.00
20032208--20032260	26	2.0	26	92	0	88	26	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20033112--20033162	26	2.0	26	96	0	93	25	25	19	29	1.99
20031683--20036593	904	5.4	900	86	3	6160	26	24	23	25	2.00
20034015--20034067	26	2.0	26	89	7	81	32	24	16	26	1.97
20034905--20034957	26	2.0	26	96	0	97	28	26	18	26	1.98
20035813--20035883	26	2.7	26	95	0	124	30	25	14	29	1.94
20034913--20036613	917	1.8	924	87	3	2557	26	24	23	26	2.00
20035857--20037314	717	2.0	715	88	2	2169	26	24	22	25	2.00
20038134--20038184	26	2.0	26	100	0	102	27	25	15	31	1.96
20039153--20039204	26	2.0	26	88	0	77	32	21	19	26	1.97
20040045--20040094	26	1.9	26	95	0	91	26	24	20	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195