genome.fa.s112.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  192  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34791705--34791739	18	1.9	18	88	0	52	34	8	31	25	1.86
34793413--34793440	2	14.0	2	100	0	56	50	0	0	50	1.00
34798384--34798415	2	16.0	2	100	0	64	50	0	0	50	1.00
34804885--34805352	235	2.0	235	94	0	828	27	21	28	22	1.99
34807264--34807317	19	3.1	18	79	10	67	64	0	0	35	0.94
34811679--34811710	15	2.1	15	100	0	64	56	18	0	25	1.42
34823694--34823718	4	6.2	4	100	0	50	24	0	0	76	0.80
34847772--34847808	14	2.8	14	88	8	51	54	8	0	37	1.30
34858836--34858901	26	2.6	24	75	13	60	59	1	0	39	1.07
34869227--34869253	3	9.0	3	100	0	54	66	0	33	0	0.92
34872084--34872116	3	11.0	3	100	0	66	66	0	0	33	0.92
34884824--34884850	2	13.5	2	100	0	54	48	0	51	0	1.00
34900827--34900852	12	2.2	12	100	0	52	15	15	7	61	1.55
34911579--34911609	16	2.0	16	93	6	55	51	6	3	38	1.44
34913284--34913317	17	1.9	18	88	5	52	47	11	0	41	1.40
34914553--34914578	13	2.0	13	100	0	52	30	7	15	46	1.74
34916328--34916529	101	2.0	101	100	0	404	28	25	17	27	1.98
34926301--34926347	21	2.3	21	88	3	69	38	21	4	36	1.73
34948088--34948313	113	2.0	113	89	0	344	46	13	19	20	1.83
34948800--34948846	2	23.5	2	91	0	76	51	0	44	4	1.21
34955737--34955812	40	1.9	40	94	0	134	28	14	19	36	1.91
34956177--34956224	23	2.1	23	96	0	87	31	8	22	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34968229--34968259	8	3.8	8	95	4	53	87	0	3	9	0.66
34968281--34968613	58	5.7	57	85	6	425	36	12	6	45	1.67
34968367--34968401	15	2.3	15	90	5	52	45	0	5	48	1.26
34968279--34968614	117	2.9	117	89	2	503	36	12	6	44	1.67
34970147--34970224	37	2.1	39	92	4	133	12	23	8	55	1.65
34971689--34972074	42	9.1	42	85	7	469	36	22	16	24	1.94
34972334--34972438	43	2.4	44	80	12	126	34	17	11	37	1.85
34973773--34973837	28	2.3	27	85	15	80	6	15	0	78	0.94
34978216--34978418	102	2.0	103	89	2	311	35	14	5	43	1.69
34978276--34978359	44	1.9	44	83	9	109	36	15	3	44	1.64
34978303--34978653	117	3.0	117	93	2	573	36	12	5	45	1.65
34978303--34978652	58	6.0	58	84	9	455	36	12	5	45	1.65
34981728--34981762	15	2.3	15	90	5	52	45	0	5	48	1.26
34981699--34982093	59	6.7	58	86	4	535	35	12	6	45	1.68
34981759--34981849	27	3.2	27	64	24	69	37	16	7	38	1.77
34981701--34982083	117	3.3	117	88	4	567	36	12	6	44	1.69
34981699--34982093	176	2.2	175	89	5	593	35	12	6	45	1.68
34983627--34983706	37	2.1	38	90	2	126	13	25	8	52	1.69
34985772--34985824	8	6.5	8	82	12	56	84	1	5	7	0.82
34985772--34985817	17	2.7	17	86	6	58	86	2	4	6	0.75
34986817--34987160	41	8.4	41	84	6	340	29	11	16	41	1.84
34987150--34987315	44	3.8	44	80	2	181	25	13	17	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34987509--34987571	24	2.8	23	80	17	78	23	3	0	73	0.98
34988348--34988376	3	9.7	3	100	0	58	31	0	0	68	0.89
34988525--34988790	57	4.4	56	72	19	162	48	5	10	34	1.62
34988525--34988640	57	2.0	57	86	6	164	45	5	12	37	1.64
34988546--34988780	57	3.9	56	72	21	172	48	5	12	34	1.63
34988582--34988723	71	2.0	72	87	4	207	47	5	12	33	1.65
34988472--34988803	128	2.6	129	89	3	501	48	5	10	34	1.62
34997203--34997245	21	2.0	21	90	0	68	34	20	2	41	1.65
35003208--35003372	91	1.8	90	89	1	258	37	9	5	47	1.58
35003781--35003838	25	2.2	26	87	6	82	41	3	3	51	1.35
35005462--35005500	4	9.8	4	85	0	51	51	5	0	43	1.24
35005462--35005500	6	6.5	6	87	0	51	51	5	0	43	1.24
35005462--35005500	10	3.9	10	89	0	51	51	5	0	43	1.24
35005777--35005830	24	2.4	23	76	11	58	57	5	0	37	1.22
35005884--35005925	5	8.4	5	84	10	59	59	0	0	40	0.97
35005886--35005923	19	2.0	20	94	5	69	65	0	0	34	0.93
35006309--35006384	24	3.3	22	78	12	82	38	1	0	60	1.05
35006309--35006385	23	3.4	21	77	16	66	37	1	0	61	1.05
35013922--35014189	136	2.0	136	91	2	441	40	18	16	23	1.91
35015517--35015542	7	3.7	7	100	0	52	30	0	0	69	0.89
35015922--35015978	30	1.9	30	88	0	87	38	0	0	61	0.96
35016943--35016984	21	2.0	22	90	4	68	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35016954--35016986	16	2.0	17	94	5	59	45	0	0	54	0.99
35016997--35017063	30	2.3	29	84	7	82	47	1	4	46	1.31
35021025--35021072	18	2.5	19	80	6	62	39	0	0	60	0.97
35062110--35062137	5	5.6	5	100	0	56	0	0	35	64	0.94
35068281--35068330	23	2.2	23	85	3	66	52	2	2	44	1.24
35069471--35069512	10	4.0	10	82	17	50	59	2	0	38	1.10
35074252--35074279	2	14.0	2	100	0	56	0	50	0	50	1.00
35103259--35103302	13	3.5	13	84	6	63	31	6	6	54	1.53
35108060--35108127	30	2.3	30	82	2	84	55	1	0	42	1.08
35116077--35116111	2	17.5	2	100	0	70	48	0	51	0	1.00
35118280--35118326	19	2.4	20	85	3	60	44	0	0	55	0.99
35118410--35118458	24	2.0	24	84	0	62	46	2	4	46	1.33
35142808--35142832	13	1.9	13	100	0	50	88	0	12	0	0.53
35147072--35147192	59	2.0	60	93	1	208	23	22	17	36	1.95
35149099--35149204	34	2.9	37	77	8	146	30	22	7	39	1.82
35149236--35149264	14	2.1	14	93	6	51	75	3	0	20	0.94
35149814--35149856	12	3.7	11	82	11	50	74	0	0	25	0.82
35149814--35149852	16	2.2	18	86	13	55	74	0	0	25	0.82
35149821--35149852	16	1.9	17	93	6	57	75	0	0	25	0.81
35151117--35151162	22	2.1	22	83	0	56	13	19	8	58	1.60
35170196--35170269	24	3.1	24	70	14	71	40	10	12	36	1.78
35170185--35170279	48	2.0	48	93	0	163	40	10	12	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35171713--35171927	72	3.0	70	81	7	245	39	9	19	31	1.84
35179353--35179404	25	2.1	25	96	0	95	40	17	19	23	1.91
35179380--35179457	39	2.0	39	97	0	147	39	16	23	20	1.92
35180745--35180772	14	2.0	14	100	0	56	35	14	7	42	1.73
35195359--35195424	16	3.7	17	77	18	55	37	1	0	60	1.06
35202036--35202067	2	16.0	2	93	0	55	46	0	0	53	1.00
35206789--35206813	5	5.0	5	100	0	50	80	0	0	20	0.72
35207156--35207184	14	2.1	14	100	0	58	44	0	0	55	0.99
35222530--35222560	7	4.4	7	100	0	62	48	38	0	12	1.42
35224785--35224870	44	2.0	44	95	0	154	26	8	17	47	1.75
35230584--35230611	2	14.0	2	100	0	56	50	0	0	50	1.00
35235135--35235257	60	2.0	60	88	0	183	31	17	17	32	1.94
35236340--35236370	2	15.5	2	100	0	62	51	0	48	0	1.00
35247923--35247983	31	2.0	31	90	0	95	42	13	14	29	1.84
35254647--35254698	19	2.7	19	93	0	86	23	15	25	36	1.93
35262671--35262767	48	2.0	48	100	0	194	30	6	22	40	1.79
35265714--35265821	43	2.6	43	80	2	112	34	23	19	23	1.97
35265796--35265937	70	2.0	71	90	5	227	32	21	21	24	1.98
35268244--35268310	28	2.4	29	75	7	66	56	1	1	40	1.17
35269608--35269671	28	2.4	27	84	7	94	54	6	0	39	1.26
35269620--35269671	14	3.7	14	70	10	52	51	7	0	40	1.30
35269720--35269782	32	1.9	33	87	3	92	60	11	1	26	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35286894--35286948	24	2.3	24	84	6	67	29	38	18	14	1.90
35290289--35290326	5	7.2	5	96	3	58	42	0	0	57	0.98
35294863--35294905	22	2.0	22	85	0	59	44	0	2	53	1.13
35294870--35294933	22	3.0	22	75	11	60	43	1	1	53	1.19
35295089--35295128	20	2.1	20	86	9	57	62	0	0	37	0.95
35295242--35295330	34	2.6	34	73	8	83	60	3	6	29	1.38
35295726--35295775	21	2.5	20	78	15	59	62	4	2	32	1.25
35296469--35296522	18	2.9	18	76	13	56	37	3	1	57	1.27
35309872--35309896	5	5.0	5	100	0	50	60	0	40	0	0.97
35315523--35315581	30	2.0	30	86	0	82	52	1	0	45	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195