genome.fa.s112.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  69  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13941060--13941294	90	2.6	90	86	0	290	20	33	28	17	1.95
13941051--13941304	135	1.9	135	83	3	332	19	33	28	18	1.96
13941309--13941408	45	2.2	45	85	3	130	20	34	28	18	1.95
13941197--13941408	114	1.9	114	82	0	271	19	33	29	18	1.95
13941491--13941599	45	2.4	45	84	0	137	14	32	33	20	1.93
13941354--13941828	249	1.9	249	82	3	598	18	31	30	19	1.96
13941600--13941821	45	4.9	45	76	3	171	18	31	31	18	1.96
13941600--13941811	90	2.4	90	81	4	241	18	31	30	18	1.96
13941673--13941835	45	3.6	45	80	3	184	17	28	33	21	1.96
13944240--13944460	45	4.9	45	79	1	183	17	28	34	19	1.94
13944260--13944460	89	2.2	90	80	2	217	18	29	32	18	1.95
13944467--13944815	45	7.8	45	75	5	294	15	32	31	20	1.94
13944358--13944578	114	1.9	114	80	1	255	19	29	30	20	1.97
13944467--13944815	90	3.9	90	82	5	350	15	32	31	20	1.94
13944884--13945986	45	24.8	45	71	9	415	16	31	31	20	1.95
13945323--13945985	135	4.9	135	78	2	573	16	31	31	20	1.95
13948569--13948787	45	4.9	45	82	2	219	18	32	30	18	1.95
13948766--13948813	24	2.0	24	83	0	60	25	35	25	14	1.94
13948790--13949083	45	6.5	45	79	3	243	20	34	27	18	1.95
13948827--13950332	90	16.7	89	68	8	346	18	32	29	19	1.96
13948626--13948993	204	1.8	204	83	1	495	19	33	28	18	1.95
13948575--13949036	249	1.9	249	82	4	592	19	33	28	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13948824--13949075	135	1.9	135	85	1	353	19	34	28	18	1.95
13948565--13949161	294	2.0	293	82	3	709	19	34	28	18	1.95
13949153--13949204	25	2.1	25	82	7	61	13	30	30	25	1.94
13949178--13950335	45	25.8	45	75	4	656	18	31	30	19	1.96
13949359--13950076	313	2.3	315	83	3	874	17	31	30	19	1.95
13949190--13950386	493	2.4	493	78	4	1192	18	31	29	19	1.96
13958152--13958204	26	2.0	26	86	13	74	30	16	22	30	1.96
13958177--13958738	171	3.3	168	73	8	495	23	28	27	20	1.99
13958014--13958741	345	2.1	345	83	3	903	23	28	27	20	1.99
13958497--13958549	26	2.0	26	85	0	70	30	20	24	24	1.99
13959707--13959870	45	3.7	44	79	5	179	16	29	31	23	1.96
13959997--13960063	35	1.9	35	87	6	100	14	31	32	20	1.93
13960379--13960626	45	5.5	45	75	5	171	18	30	28	22	1.97
13960743--13960790	25	1.9	25	83	8	62	10	33	35	20	1.87
13961009--13961115	44	2.4	45	81	4	119	19	29	28	22	1.98
13960884--13961132	134	1.8	136	80	5	299	20	29	27	22	1.99
13960768--13961745	45	21.8	45	75	3	561	18	31	29	21	1.97
13961898--13961924	10	2.7	10	100	0	54	29	48	11	11	1.73
13969398--13969450	26	2.0	26	89	7	81	28	16	24	30	1.97
13969426--13969997	302	1.9	302	81	2	700	25	28	26	19	1.98
13970413--13970771	45	8.0	45	78	2	308	16	30	30	21	1.96
13970471--13970846	180	2.1	180	83	0	473	18	32	28	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13970426--13970800	90	4.2	90	76	4	351	17	31	30	21	1.96
13970421--13970801	135	2.8	134	76	4	361	17	30	29	21	1.96
13990794--13990846	26	2.0	26	92	0	88	28	18	24	28	1.98
13991139--13991191	26	2.0	26	92	0	88	28	18	24	28	1.98
13992063--13992271	45	4.6	45	77	5	181	18	32	30	18	1.95
13992284--13992464	45	4.0	45	86	2	265	14	32	34	18	1.91
13992106--13992465	193	1.9	193	85	0	504	16	32	32	18	1.93
13993089--13995743	45	58.9	45	73	5	1352	19	30	29	20	1.97
13994827--13995241	179	2.3	180	82	1	501	17	31	32	19	1.95
13995579--13995784	90	2.3	90	79	1	207	16	32	29	20	1.95
13995743--13995886	77	1.9	77	85	2	200	19	34	27	19	1.96
13995748--13995910	77	2.1	76	81	8	179	20	34	26	19	1.96
14001204--14001256	26	2.0	26	100	0	106	26	16	26	30	1.97
14000922--14001697	334	2.3	332	80	3	871	22	28	28	20	1.98
14002481--14002636	45	3.5	44	76	3	132	14	31	32	21	1.94
14002682--14002728	24	2.0	24	86	0	67	19	31	25	23	1.98
14002706--14003395	45	15.4	45	70	6	260	19	30	29	21	1.97
14002706--14002948	90	2.7	90	82	5	294	15	30	33	20	1.94
14002706--14002948	135	1.8	135	82	1	317	15	30	33	20	1.94
14004141--14004235	44	2.1	44	81	9	104	16	30	29	23	1.96
14003717--14004386	45	14.9	45	71	6	309	18	29	30	20	1.97
14004521--14004641	45	2.7	44	79	2	116	18	30	28	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14004717--14004822	45	2.4	45	80	6	117	22	37	23	16	1.93
14012442--14012494	26	2.0	26	92	0	88	28	18	24	28	1.98
14012786--14012838	26	2.0	26	92	0	88	28	24	22	24	2.00
14014086--14015100	45	22.2	45	72	7	553	17	31	30	20	1.95
14014925--14014983	26	2.3	25	91	2	91	11	30	33	23	1.91
14014976--14015118	45	3.2	45	82	2	171	16	30	30	23	1.96
14015096--14015143	25	1.9	25	83	8	62	12	27	33	27	1.92
14015121--14015968	45	18.9	45	73	5	385	18	30	30	21	1.97
14015006--14015220	115	1.9	115	82	0	268	17	30	31	21	1.96
14023983--14024035	26	2.0	26	92	0	88	30	20	22	26	1.98
14024891--14025095	45	4.6	45	75	7	157	16	31	31	20	1.95
14024923--14025125	45	4.5	45	75	4	176	17	31	30	21	1.96
14025271--14025419	54	2.8	54	84	0	181	14	31	34	20	1.92
14031634--14031984	135	2.6	134	78	2	335	17	29	30	22	1.97
14031553--14031877	180	1.8	180	82	4	422	18	29	30	21	1.97
14031553--14031923	180	2.1	180	80	4	417	19	29	29	21	1.98
14031542--14031988	45	9.9	45	71	2	261	17	29	30	21	1.97
14032254--14032419	45	3.7	45	76	1	154	19	30	28	21	1.98
14032576--14032699	45	2.8	44	80	4	115	17	37	26	18	1.93
14038341--14038393	26	2.0	26	88	0	79	30	15	22	32	1.94
14038376--14038939	174	3.3	170	73	9	523	24	29	26	19	1.98
14039629--14040004	135	2.8	133	73	7	346	21	32	26	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14039751--14040166	45	9.2	45	71	9	179	19	30	27	21	1.98
14041121--14041170	26	1.9	26	92	8	84	28	16	28	28	1.97
14041465--14041515	26	2.0	26	92	0	84	29	13	27	29	1.94
14042429--14042628	45	4.5	44	75	10	154	20	31	29	19	1.97
14042436--14042621	90	2.1	90	79	6	198	19	31	29	19	1.97
14042664--14042964	114	2.6	112	82	3	334	18	29	28	22	1.97
14042882--14043093	45	4.7	45	83	4	232	19	33	27	19	1.96
14042882--14043175	90	3.3	87	77	8	268	19	33	27	19	1.96
14042929--14043175	89	2.8	90	79	6	243	19	34	27	18	1.95
14042916--14043188	45	6.1	45	82	6	250	18	34	28	18	1.95
14042856--14043175	135	2.4	135	79	5	328	20	33	26	19	1.96
14042856--14043188	134	2.5	135	79	5	345	19	33	27	19	1.96
14043220--14043341	44	2.7	45	74	8	115	21	31	27	19	1.97
14043322--14043716	135	2.9	133	74	5	371	22	32	26	19	1.97
14043499--14044296	45	17.8	45	73	4	439	19	33	27	19	1.96
14043644--14044240	135	4.4	136	76	6	518	18	33	27	19	1.96
14043423--14044296	180	4.9	180	79	3	616	20	32	27	19	1.96
14043309--14044296	90	11.0	90	73	6	554	20	32	27	19	1.97
14044296--14044429	45	3.0	45	78	10	139	18	31	29	20	1.96
14044138--14044455	159	2.0	159	82	3	390	19	33	27	19	1.96
14044321--14044461	45	3.1	44	77	7	124	17	34	29	19	1.95
14044396--14044508	45	2.5	44	81	2	118	18	32	27	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14044321--14044522	90	2.2	90	79	5	194	16	32	29	21	1.96
14044571--14045359	45	17.6	45	72	6	375	18	30	30	20	1.97
14044408--14044730	160	2.0	160	81	3	373	14	29	33	23	1.94
14044571--14045339	135	5.7	134	74	4	481	18	30	30	20	1.96
14044676--14045163	179	2.7	179	77	4	421	19	29	29	21	1.97
14046696--14046731	16	2.2	16	100	0	72	47	25	5	22	1.73
14046916--14047178	45	5.8	45	81	3	224	16	33	30	19	1.94
14046916--14047213	90	3.2	90	79	4	281	17	33	30	19	1.94
14047245--14047410	45	3.7	44	80	7	147	18	31	30	20	1.96
14046843--14047414	303	1.9	303	83	1	734	18	32	29	19	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195