genome.fa.s112.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  59  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12075991--12076608	231	2.6	231	81	9	696	35	11	12	40	1.79
12076431--12076792	185	2.0	184	84	4	471	30	11	15	42	1.83
12077627--12077687	28	2.2	28	84	0	77	29	3	22	44	1.69
12077679--12077738	12	4.9	12	78	11	68	23	10	26	40	1.86
12077679--12077748	25	2.8	24	73	2	68	22	8	25	42	1.82
12080919--12080986	34	2.0	35	94	2	120	27	22	16	33	1.95
12081615--12081750	63	2.2	63	84	7	170	33	19	9	37	1.85
12082033--12082069	19	1.9	19	94	0	65	18	32	2	45	1.64
12082217--12082258	7	6.6	7	91	8	56	7	11	0	80	0.88
12082197--12082258	25	2.4	25	84	10	72	8	11	0	80	0.90
12082216--12082252	17	2.1	18	90	10	58	5	10	0	83	0.79
12082217--12082265	14	3.8	13	84	12	66	8	12	0	79	0.93
12082197--12082265	6	11.7	6	80	10	56	8	11	0	79	0.93
12082710--12082779	18	3.8	18	75	11	54	7	11	1	80	0.97
12083607--12083640	12	3.0	12	91	8	54	38	0	0	61	0.96
12083607--12083650	22	2.0	22	82	8	54	40	2	0	56	1.11
12087574--12087605	2	16.0	2	100	0	64	50	0	0	50	1.00
12095706--12095778	25	2.7	26	83	12	85	39	1	10	47	1.47
12102609--12102783	69	2.5	69	87	4	253	41	18	7	32	1.78
12102844--12102915	35	2.1	35	86	0	99	34	19	15	30	1.93
12102878--12103204	67	4.8	69	81	4	358	40	17	9	32	1.81
12102903--12103204	136	2.2	136	88	1	426	41	17	9	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12103788--12103831	12	3.7	12	90	0	61	45	15	13	25	1.83
12103788--12103845	24	2.4	24	82	0	71	41	17	17	24	1.90
12103797--12103845	12	4.1	12	86	0	62	40	20	16	22	1.91
12104010--12104094	41	2.1	41	88	0	125	31	15	21	31	1.94
12104010--12104112	41	2.5	41	82	1	109	31	13	19	35	1.91
12106716--12106755	18	2.2	19	90	4	64	20	10	10	60	1.57
12109092--12109316	117	1.9	117	88	5	339	30	23	8	38	1.83
12113351--12113410	26	2.3	26	91	0	93	48	6	0	45	1.29
12114866--12114926	16	3.8	15	77	12	59	83	3	9	3	0.87
12114866--12114926	24	2.6	24	80	14	65	83	3	9	3	0.87
12115418--12115451	17	2.0	17	94	0	59	38	0	17	44	1.49
12119257--12119357	16	6.2	15	70	12	58	76	1	15	5	1.07
12119258--12119396	11	11.9	11	67	17	57	73	1	17	7	1.13
12122267--12122302	18	1.9	19	88	5	56	80	0	11	8	0.90
12122751--12122783	14	2.4	14	94	0	57	87	0	6	6	0.65
12122996--12123033	5	7.6	5	93	0	67	39	42	0	18	1.50
12123262--12123299	18	2.2	18	90	4	60	86	2	10	0	0.66
12123239--12123299	16	3.9	14	80	20	59	83	3	9	3	0.87
12127618--12127702	16	4.9	17	72	21	61	76	1	15	7	1.06
12127688--12127770	39	2.1	39	80	8	89	68	2	24	4	1.21
12132605--12132647	19	2.3	18	84	7	59	51	6	9	32	1.61
12132617--12132673	20	2.9	20	89	2	80	50	8	3	36	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12135334--12135367	16	2.1	16	88	0	50	79	8	2	8	1.03
12135855--12136310	149	3.1	148	77	9	358	54	8	16	20	1.68
12135855--12136176	149	2.1	150	81	7	361	55	8	16	20	1.66
12137952--12138035	23	3.7	22	76	7	71	28	25	20	26	1.99
12138091--12138132	22	1.9	22	85	9	59	26	21	26	26	1.99
12138205--12138269	32	2.0	33	88	8	98	32	27	18	21	1.97
12138394--12138454	22	2.8	22	76	0	68	29	29	21	19	1.98
12138775--12139080	104	3.0	103	86	2	400	34	14	16	34	1.89
12139007--12139162	82	1.9	82	86	2	224	38	11	14	35	1.82
12139485--12139511	13	2.1	13	100	0	54	85	7	0	7	0.75
12141131--12141166	2	18.0	2	100	0	72	50	0	0	50	1.00
12149522--12149565	2	22.0	2	95	0	79	47	0	2	50	1.13
12152086--12152150	28	2.5	26	77	7	69	13	9	4	72	1.26
12153462--12153567	52	2.0	52	87	0	149	38	6	17	36	1.76
12153565--12153608	18	2.4	18	81	7	54	54	6	6	31	1.53
12153539--12153626	44	2.0	45	86	2	124	47	7	10	34	1.67
12153547--12153646	27	3.8	25	74	12	69	48	9	11	32	1.70
12153659--12153700	18	2.3	18	84	8	50	40	11	14	33	1.82
12153907--12153988	43	1.9	42	82	7	103	41	19	4	34	1.73
12157187--12157230	12	3.7	12	76	11	54	25	13	6	54	1.63
12159968--12160012	22	2.1	21	88	12	65	62	2	8	26	1.37
12160308--12160418	54	2.1	53	81	1	123	34	9	16	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12160900--12161237	129	2.6	127	78	5	351	28	13	14	42	1.84
12160844--12161109	64	4.1	64	81	5	259	27	14	14	42	1.85
12160898--12161154	64	4.0	64	78	10	195	26	14	15	43	1.85
12160909--12161237	128	2.6	128	79	4	351	28	13	15	41	1.85
12161391--12161531	57	2.5	57	82	6	153	23	19	20	36	1.95
12161540--12161851	57	5.4	58	77	6	226	22	15	19	42	1.88
12163487--12163524	17	2.3	16	86	13	51	71	0	2	26	1.00
12166283--12166316	18	1.9	17	88	5	50	29	11	5	52	1.61
12168220--12168284	25	2.5	26	75	9	71	16	6	24	52	1.67
12168314--12168364	26	2.0	26	84	7	68	27	11	17	43	1.84
12168546--12168584	18	2.2	18	86	9	53	38	0	0	61	0.96
12169008--12169384	207	1.8	207	93	1	657	38	20	10	29	1.87
12170563--12170627	16	4.1	15	74	18	51	24	3	1	70	1.10
12171065--12171127	20	3.3	19	80	6	65	7	1	11	79	1.00
12171179--12171416	31	7.7	31	67	10	137	39	12	24	23	1.89
12171174--12171414	62	3.9	62	77	7	249	39	13	24	22	1.90
12171157--12171382	124	1.8	124	85	5	323	39	13	24	21	1.90
12171425--12171869	35	12.7	34	70	12	129	50	11	19	19	1.76
12171428--12171869	70	6.3	69	73	9	265	50	10	19	19	1.76
12171427--12171699	105	2.6	105	79	3	271	51	10	18	19	1.75
12171463--12171798	105	3.2	104	77	4	255	51	10	19	19	1.74
12171813--12171938	35	3.6	35	77	4	119	49	12	20	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12172020--12172093	23	3.3	22	69	14	53	21	18	22	36	1.95
12172140--12172298	66	2.4	67	78	10	175	30	12	18	37	1.88
12172187--12172342	32	4.7	34	69	16	94	30	10	21	36	1.88
12172171--12172330	66	2.4	64	80	9	178	29	11	21	38	1.88
12172347--12172465	33	3.6	34	80	9	113	26	13	20	39	1.89
12172306--12172563	76	3.5	75	73	15	218	29	13	19	37	1.90
12172339--12172485	67	2.2	66	83	7	174	29	12	19	38	1.88
12172371--12172482	33	3.4	32	74	14	93	28	12	19	39	1.88
12172227--12172562	143	2.4	142	82	6	385	29	13	19	37	1.90
12172438--12172528	43	2.1	44	85	6	123	31	13	17	37	1.88
12172482--12172564	33	2.5	33	81	7	98	30	16	18	34	1.93
12173997--12174047	10	4.8	10	81	13	50	1	13	1	82	0.85
12174724--12174799	23	3.5	22	81	10	75	23	1	0	75	0.89
12174730--12174776	19	2.4	20	92	3	78	25	2	0	72	0.96
12174710--12174843	55	2.4	55	78	13	141	21	2	2	73	1.05
12174719--12174801	19	4.5	18	69	18	55	24	1	0	74	0.89
12174765--12174837	23	3.1	22	75	11	65	20	1	2	75	1.00
12176859--12177486	164	4.0	157	76	13	509	38	14	15	32	1.87
12177050--12177323	148	1.9	148	85	7	387	38	13	14	32	1.86
12184174--12184229	3	18.7	3	92	0	85	28	1	3	66	1.19
12185325--12185358	12	3.0	11	87	8	50	14	0	0	85	0.60
12185324--12185357	15	2.4	14	90	5	50	11	0	0	88	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12185554--12185588	12	2.9	12	91	0	61	17	11	34	37	1.85
12187667--12187720	25	2.2	25	93	0	90	38	9	22	29	1.85
12193269--12193335	6	11.7	6	76	7	52	31	1	1	65	1.10
12193334--12193371	20	1.9	20	88	0	58	50	5	0	44	1.24
12197666--12197716	24	2.0	25	85	14	70	0	23	0	76	0.79
12197664--12197724	21	3.2	20	84	15	76	0	19	0	80	0.72
12197676--12197723	18	2.7	18	84	9	62	0	18	0	81	0.70
12197664--12197722	15	3.9	14	77	14	55	0	20	0	79	0.73
12197668--12197724	19	2.9	19	79	5	69	0	19	0	80	0.71
12199472--12199565	5	18.2	5	79	5	98	3	3	36	57	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195