genome.fa.s112.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  194  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35734373--35734643	58	4.7	58	86	8	383	42	5	14	37	1.69
35744859--35744900	17	2.5	17	88	7	59	78	0	14	7	0.95
35744849--35744892	23	2.0	23	95	4	81	81	0	11	6	0.86
35744867--35744900	16	2.1	17	89	10	54	79	0	14	5	0.91
35745903--35746369	42	11.1	41	83	9	529	25	15	20	38	1.92
35745903--35746369	83	5.6	81	84	6	523	25	15	20	38	1.92
35745903--35746369	125	3.7	124	82	7	552	25	15	20	38	1.92
35746556--35746601	7	6.6	7	87	9	67	21	0	2	76	0.90
35746546--35746602	21	2.7	21	89	5	80	19	0	3	77	0.92
35746619--35746649	15	2.1	15	93	0	53	25	0	3	70	1.02
35746624--35746796	28	5.9	28	69	23	92	32	4	1	61	1.24
35746631--35746708	32	2.3	35	82	10	92	32	2	2	62	1.22
35746740--35746854	42	2.7	41	88	6	142	28	6	0	64	1.23
35746744--35746859	21	5.6	19	76	13	90	28	6	0	64	1.23
35747220--35747275	19	2.9	19	89	0	76	32	12	16	39	1.85
35747737--35747781	3	15.7	3	78	17	51	31	0	0	68	0.89
35747732--35747782	18	2.7	19	80	11	61	29	0	0	70	0.87
35747739--35747777	19	2.0	21	90	10	64	33	0	0	66	0.92
35747811--35747867	5	10.8	5	78	10	60	17	3	0	78	0.88
35747811--35747866	16	3.5	15	79	15	60	17	3	0	78	0.89
35747884--35748098	58	3.7	57	84	8	274	42	6	13	37	1.71
35748594--35748624	14	2.2	14	94	0	53	70	3	0	25	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35750018--35750066	10	4.5	11	74	20	50	81	14	0	4	0.83
35750018--35750067	21	2.4	21	80	6	57	82	14	0	4	0.82
35750018--35750067	11	4.8	10	78	9	55	82	14	0	4	0.82
35751351--35751396	8	5.8	8	100	0	92	39	0	47	13	1.42
35753306--35753340	13	2.6	13	95	4	61	85	0	14	0	0.59
35753305--35753341	17	2.2	17	95	0	65	86	0	13	0	0.57
35754712--35754882	42	4.1	42	79	3	173	26	12	19	40	1.88
35754886--35754950	33	2.0	33	93	0	112	24	16	16	41	1.89
35754819--35755024	108	1.9	108	84	2	279	23	13	20	42	1.88
35754979--35755133	33	4.4	33	72	19	125	22	14	23	40	1.90
35754899--35755106	75	2.8	74	84	2	245	23	12	21	41	1.88
35754819--35755178	183	2.0	183	83	0	450	24	13	20	41	1.88
35755352--35755856	49	10.5	49	82	4	494	31	11	16	40	1.84
35755500--35755662	47	3.5	46	81	11	127	32	13	13	40	1.84
35765226--35766192	333	2.9	332	81	4	1113	37	10	14	37	1.80
35768416--35768458	2	21.5	2	85	0	50	2	6	46	44	1.43
35785957--35785981	3	8.3	3	100	0	50	68	0	32	0	0.90
35787009--35787034	2	13.0	2	100	0	52	50	0	0	50	1.00
35787135--35787176	20	2.0	21	86	4	59	40	0	0	59	0.97
35795162--35795214	23	2.3	23	84	9	65	37	1	0	60	1.08
35795815--35796229	219	1.9	219	79	6	475	31	9	5	53	1.56
35795404--35796299	218	4.1	216	74	10	648	31	10	6	52	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35797280--35797327	18	2.5	19	80	16	55	27	4	8	60	1.44
35797067--35797643	218	2.6	217	77	9	577	29	8	5	56	1.51
35798912--35798950	19	2.1	19	86	13	55	23	5	5	66	1.32
35798924--35799006	41	2.0	40	82	11	98	28	4	3	62	1.32
35801823--35801875	22	2.5	21	84	6	63	18	15	7	58	1.60
35816162--35816673	173	2.9	173	75	8	471	45	7	6	40	1.58
35815809--35816696	179	5.0	179	74	10	685	45	7	6	40	1.59
35816563--35816846	151	1.9	149	80	2	336	38	10	9	41	1.72
35818314--35818483	43	3.7	43	74	21	171	38	10	7	44	1.65
35818313--35818532	99	2.2	98	91	1	359	39	11	8	41	1.71
35818500--35818963	182	2.5	180	80	6	490	38	9	7	43	1.67
35819238--35819579	180	1.9	180	80	8	405	42	8	8	40	1.66
35819559--35819665	43	2.5	43	93	0	178	41	6	5	46	1.53
35820226--35820258	18	1.9	17	88	11	50	42	6	6	45	1.53
35820408--35820440	18	1.9	17	88	11	50	39	6	6	48	1.53
35822468--35827317	181	26.9	181	76	6	3333	42	9	8	40	1.67
35822832--35822879	17	2.7	19	84	12	66	43	6	4	45	1.48
35822437--35836712	361	39.2	360	69	12	3830	41	8	8	40	1.66
35823568--35823600	17	2.0	17	88	5	50	33	12	6	48	1.65
35822470--35827306	539	8.9	534	75	8	2209	42	9	8	40	1.67
35826802--35826850	18	2.8	17	78	12	55	42	14	2	40	1.57
35826802--35826849	17	2.8	17	81	9	53	43	14	2	39	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35827289--35827373	28	3.0	28	96	0	152	51	4	15	28	1.63
35827639--35828088	180	2.5	177	77	7	435	42	9	8	40	1.66
35827628--35828148	177	2.9	179	75	8	461	41	9	8	40	1.69
35828181--35828226	14	3.6	14	72	22	55	21	2	13	63	1.40
35828177--35828226	24	2.1	24	100	0	100	22	4	12	62	1.46
35828227--35828715	183	2.7	177	77	11	477	42	8	7	40	1.65
35828816--35833221	180	24.4	181	73	8	2512	41	9	8	41	1.66
35829515--35829558	23	1.9	23	90	0	70	47	6	11	34	1.66
35829335--35829725	204	1.9	203	82	1	487	42	7	8	41	1.64
35833219--35836712	180	19.4	181	77	6	2570	42	7	8	41	1.64
35836488--35836541	17	3.0	19	73	13	51	42	7	5	44	1.55
35836832--35837313	181	2.7	178	79	4	482	42	7	8	41	1.64
35837362--35837691	180	1.8	181	82	3	423	39	8	9	43	1.66
35836909--35837761	426	2.0	426	98	0	1652	41	7	9	41	1.67
35837356--35837739	180	2.1	181	79	3	407	41	7	9	41	1.67
35838083--35838403	179	1.8	178	81	8	404	41	9	9	40	1.69
35837901--35845105	181	39.9	180	73	10	3341	40	7	9	42	1.67
35837901--35845105	540	13.3	530	72	12	2652	40	7	9	42	1.67
35840729--35840809	41	2.0	41	92	0	135	40	9	13	35	1.78
35840553--35840980	221	1.9	221	83	4	551	38	8	10	42	1.70
35840997--35842012	182	5.6	180	77	7	516	39	7	10	42	1.68
35842436--35842494	29	2.1	27	81	15	66	38	1	1	57	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35840770--35859631	543	35.0	531	71	12	5669	40	7	9	42	1.67
35837894--35845149	361	20.1	359	72	10	3712	40	7	9	42	1.66
35845901--35845933	17	2.0	17	88	5	50	48	0	12	39	1.40
35845165--35847999	181	15.7	179	76	9	1913	40	7	10	42	1.67
35845347--35859625	724	19.9	709	72	11	4259	40	7	9	42	1.67
35847126--35847960	180	4.6	181	76	7	669	38	8	11	41	1.71
35848022--35850324	181	12.8	182	77	7	1678	41	7	9	41	1.65
35849149--35849184	18	2.1	17	90	10	56	41	5	2	50	1.40
35849648--35850065	180	2.3	176	81	4	453	41	5	10	42	1.63
35850020--35850074	18	3.2	18	72	15	53	45	1	9	43	1.46
35849934--35850297	192	1.9	192	80	5	432	40	5	11	42	1.64
35850916--35850964	18	2.8	17	81	9	55	48	6	6	38	1.53
35850433--35858567	181	44.9	181	74	10	4835	40	8	9	41	1.67
35850433--35859631	362	25.5	357	72	11	4878	40	8	9	42	1.68
35853738--35853842	54	1.9	54	82	0	129	44	8	10	36	1.69
35853850--35858567	180	26.2	180	76	7	3235	40	8	9	42	1.68
35853807--35858567	361	13.2	358	76	7	3433	40	8	9	41	1.68
35855414--35855442	14	2.0	15	93	6	51	48	6	6	37	1.57
35856255--35856570	168	1.9	167	83	5	413	40	6	9	43	1.64
35857183--35857522	165	2.0	167	82	5	402	39	9	8	42	1.68
35857694--35857736	17	2.6	17	81	3	52	34	0	4	60	1.17
35858580--35859631	182	5.8	181	77	6	959	38	7	10	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35859509--35859803	153	1.9	154	81	5	348	42	8	10	38	1.71
35859657--35860096	181	2.5	176	83	4	508	43	7	9	39	1.65
35859946--35860251	146	2.1	146	85	2	409	39	8	9	42	1.68
35859097--35861159	506	4.0	503	75	11	1530	40	7	10	41	1.67
35860830--35860863	16	2.1	17	94	5	61	32	0	0	67	0.91
35860115--35861522	538	2.6	538	77	9	1233	41	7	9	41	1.66
35861222--35862262	180	5.8	178	76	9	568	41	8	8	41	1.66
35861988--35862026	19	1.9	20	85	15	53	46	5	15	33	1.68
35861204--35862416	534	2.2	536	79	7	1264	40	7	9	42	1.66
35860086--35863021	181	16.4	180	74	8	1792	40	7	10	41	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195