genome.fa.s112.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  27  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6201037--6201074	15	2.7	14	88	8	51	60	5	5	28	1.40
6201604--6201682	29	2.6	30	82	7	90	50	1	3	44	1.28
6202594--6202647	23	2.2	25	75	12	60	46	3	11	38	1.57
6202594--6202648	24	2.3	25	78	12	62	45	3	10	40	1.57
6202662--6202710	11	4.3	12	85	10	50	40	0	0	59	0.98
6202667--6202716	11	4.2	12	77	15	50	38	0	2	60	1.09
6205132--6205193	32	1.9	32	96	0	115	43	12	30	12	1.81
6212246--6212601	60	5.9	60	82	7	388	37	10	4	48	1.57
6212668--6212697	3	10.0	3	100	0	60	66	0	0	33	0.92
6212696--6212721	3	8.7	3	100	0	52	34	30	0	34	1.58
6216329--6216395	16	4.3	15	77	5	62	19	4	10	65	1.40
6216930--6216967	16	2.4	16	83	16	53	50	0	2	47	1.15
6216986--6217020	18	1.9	18	94	0	61	48	0	0	51	1.00
6216986--6217061	23	3.4	22	71	12	73	47	0	1	51	1.09
6217074--6217138	19	3.5	19	71	24	66	47	0	1	50	1.10
6217353--6217413	3	20.3	3	100	0	122	67	0	0	32	0.91
6218781--6218910	65	2.0	65	89	3	199	45	13	8	33	1.73
6221766--6221817	19	2.5	21	81	12	63	13	15	1	69	1.28
6222505--6222943	218	2.0	218	100	0	878	37	12	6	43	1.69
6226446--6226493	20	2.4	19	83	13	53	70	6	6	16	1.28
6228777--6228822	18	2.6	18	79	3	58	56	0	0	43	0.99
6229698--6229749	25	2.1	25	82	7	61	53	1	11	32	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6231579--6231625	24	2.0	24	84	12	62	25	12	12	48	1.77
6233685--6234301	163	3.8	163	81	3	586	37	16	13	31	1.89
6237330--6237380	18	2.8	19	88	8	79	43	9	17	29	1.81
6237420--6237551	18	7.4	18	69	15	62	46	12	12	27	1.78
6237398--6237517	55	2.2	55	81	11	133	48	13	11	26	1.76
6237306--6237521	36	6.1	36	69	15	128	47	12	13	27	1.78
6237597--6237700	45	2.4	44	82	6	115	38	11	12	37	1.80
6238437--6238489	28	1.9	27	88	3	79	35	7	22	33	1.83
6245401--6245476	25	3.1	23	75	20	66	11	9	2	76	1.12
6245504--6245557	24	2.2	25	77	9	58	31	1	11	55	1.45
6245604--6245651	21	2.3	21	81	0	60	33	8	10	47	1.68
6245635--6245694	21	2.8	21	87	5	75	33	6	10	50	1.62
6247865--6247943	3	26.7	3	84	7	99	31	1	3	63	1.20
6248607--6248965	180	2.0	180	94	1	630	24	15	18	40	1.90
6249003--6249038	16	2.2	16	90	0	54	63	8	2	25	1.36
6252899--6252934	9	3.9	9	85	7	54	88	5	2	2	0.67
6252887--6252934	19	2.4	19	89	6	69	87	4	2	6	0.73
6253893--6253920	14	2.0	14	100	0	56	35	14	14	35	1.86
6255648--6255681	14	2.4	14	95	5	59	85	0	0	14	0.60
6257034--6257068	15	2.3	15	90	0	52	77	2	14	5	1.07
6259550--6259605	18	3.2	17	75	9	58	41	12	7	39	1.70
6260188--6260219	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6260993--6261035	21	2.0	22	86	4	61	34	6	6	51	1.56
6261031--6261080	21	2.3	21	86	3	64	32	4	8	56	1.47
6262214--6262255	22	1.9	22	95	0	75	61	4	7	26	1.42
6263467--6263507	21	2.0	20	85	4	55	17	12	12	58	1.63
6263977--6264015	18	2.1	19	85	4	53	53	7	5	33	1.51
6264648--6264698	13	3.6	14	78	21	54	1	15	1	80	0.89
6267274--6267323	24	2.1	24	96	0	91	28	20	14	38	1.91
6267988--6268043	27	2.0	28	82	3	69	50	5	5	39	1.48
6268658--6268695	3	12.7	3	100	0	76	34	0	0	65	0.93
6269688--6269753	25	2.7	23	80	11	69	33	3	4	59	1.33
6271219--6271244	7	3.7	7	100	0	52	42	0	0	57	0.98
6272089--6272119	15	2.1	15	94	5	55	67	0	0	32	0.91
6272632--6272682	22	2.4	21	83	9	59	41	1	1	54	1.22
6281232--6281280	22	2.2	22	77	0	53	77	10	6	6	1.11
6281818--6281868	8	6.2	8	75	20	52	19	1	0	78	0.85
6281821--6281868	17	3.0	16	80	19	64	18	2	0	79	0.84
6282036--6282060	10	2.5	10	100	0	50	68	0	0	32	0.90
6283260--6283293	16	2.2	16	89	5	52	79	5	2	11	1.02
6283250--6283315	19	3.4	19	83	10	71	75	6	6	12	1.16
6287083--6287120	19	2.0	19	100	0	76	52	10	5	31	1.58
6288985--6289104	12	9.6	12	75	12	80	41	29	8	20	1.81
6289008--6289134	64	2.0	64	96	0	236	41	27	7	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6289108--6289178	28	2.5	28	83	0	88	52	19	1	26	1.55
6289667--6290102	186	2.3	185	78	4	468	42	12	11	34	1.78
6290208--6290765	185	3.0	183	85	3	742	38	12	14	33	1.85
6298736--6298845	34	3.2	34	84	0	121	42	20	10	27	1.83
6298749--6298893	68	2.1	68	84	0	182	37	17	14	31	1.90
6298748--6298893	34	4.3	34	82	3	159	36	17	14	30	1.90
6301178--6301289	57	2.0	57	96	0	206	36	14	6	42	1.71
6305228--6305405	88	2.0	89	97	1	340	22	20	8	48	1.76
6316367--6316402	17	2.1	17	90	10	56	50	2	2	44	1.31
6321037--6321080	22	2.0	22	86	4	63	47	2	0	50	1.13
6329875--6329933	12	4.7	12	75	24	59	66	0	0	33	0.92
6329874--6329940	26	2.6	25	77	13	66	67	0	0	32	0.91
6335440--6335668	111	2.0	113	93	5	390	36	11	23	28	1.90
6336155--6336188	6	5.7	6	100	0	68	52	0	0	47	1.00
6336969--6336994	6	4.3	6	100	0	52	34	50	0	15	1.45
6339247--6339289	22	2.0	22	86	9	61	62	2	2	32	1.20
6340758--6340798	16	2.4	17	80	19	50	9	21	0	68	1.18
6343532--6343584	25	2.2	24	83	10	63	28	13	13	45	1.80
6345208--6345273	21	3.1	21	76	4	71	39	6	9	45	1.61
6345575--6345604	10	3.1	10	95	4	53	36	0	0	63	0.95
6346058--6346234	22	8.0	22	70	2	86	41	9	6	42	1.64
6346058--6346150	44	2.1	44	85	0	123	39	12	4	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6346201--6346299	11	9.1	11	70	8	60	43	5	3	48	1.40
6346086--6346316	66	3.5	66	74	6	191	42	7	5	44	1.56
6346179--6346253	22	3.4	22	79	3	62	41	5	6	46	1.53
6346167--6346275	33	3.3	33	72	10	89	43	4	5	46	1.47
6346286--6346351	30	2.2	29	82	10	80	48	9	3	39	1.50
6346332--6346382	22	2.3	22	93	0	84	43	9	5	41	1.62
6346543--6346625	22	3.8	22	78	9	80	39	9	2	48	1.49
6346543--6346640	22	4.5	21	76	10	72	38	9	4	47	1.54
6346543--6346625	43	1.9	44	82	2	105	39	9	2	48	1.49
6346540--6346640	43	2.3	43	77	1	103	38	8	4	47	1.57
6346777--6346810	11	3.1	11	86	0	50	38	5	2	52	1.41
6346776--6346862	22	4.0	21	72	13	68	34	8	4	52	1.51
6346556--6346832	44	6.1	44	71	12	168	39	9	3	47	1.54
6347145--6347223	22	3.6	22	79	6	81	41	7	2	48	1.45
6347389--6347653	22	12.2	22	71	13	102	35	9	6	48	1.60
6347401--6347503	43	2.4	45	82	8	115	33	9	6	49	1.62
6347563--6347653	21	4.2	22	73	9	71	36	9	3	50	1.52
6347694--6347784	22	4.1	22	81	2	85	43	8	2	45	1.47
6347722--6347760	11	3.5	11	82	0	51	38	2	5	53	1.37
6348685--6348731	22	2.1	22	92	0	76	23	8	4	63	1.40
6351627--6351700	28	2.5	30	71	8	71	41	1	1	55	1.17
6351673--6351711	20	2.0	20	84	0	51	43	2	0	53	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6351704--6351758	20	2.9	20	76	17	64	54	0	0	45	0.99
6356484--6356533	22	2.3	22	82	6	57	2	14	4	80	0.95
6357524--6357554	2	15.5	2	93	0	53	51	3	0	45	1.17
6357524--6357563	10	4.0	10	93	0	53	50	7	0	42	1.30
6358663--6358696	2	17.0	2	93	0	59	52	0	47	0	1.00
6363840--6363890	7	7.0	7	77	14	50	21	0	0	78	0.75
6363893--6364037	28	5.3	27	71	17	113	33	4	0	61	1.20
6363893--6364037	56	2.7	53	85	11	197	33	4	0	61	1.20
6363947--6364017	32	2.2	32	85	12	92	32	5	1	60	1.29
6363977--6364032	22	2.6	22	91	2	87	32	5	0	62	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195