genome.fa.s112.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35885061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   

This is table  70  of  195  ( 23297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14047337--14048409	45	24.1	45	69	8	167	19	31	29	19	1.96
14047337--14047500	90	1.8	90	80	5	197	18	29	31	20	1.96
14046834--14047472	303	2.1	303	80	1	717	18	31	29	19	1.96
14047609--14047855	79	3.0	79	80	7	215	19	29	30	19	1.97
14047227--14048170	484	2.0	484	90	0	1494	20	30	29	19	1.97
14047695--14048345	90	7.2	90	70	7	264	19	31	29	19	1.96
14047687--14047989	135	2.2	135	78	2	331	18	31	31	18	1.95
14048058--14048345	135	2.1	135	79	1	308	20	31	28	18	1.96
14048108--14048391	135	2.1	135	79	2	293	19	33	28	18	1.95
14048193--14048485	45	6.5	45	72	4	178	20	34	26	18	1.96
14048193--14048510	90	3.5	90	76	5	266	20	33	27	18	1.96
14048193--14048546	90	3.9	90	76	5	241	20	32	27	19	1.97
14048406--14048753	135	2.6	135	76	4	351	20	29	27	22	1.98
14060815--14060918	45	2.3	45	81	0	118	20	33	28	17	1.95
14060947--14061162	45	4.8	45	80	1	220	15	31	30	23	1.95
14060842--14061121	90	3.1	90	77	3	260	16	32	30	20	1.95
14060867--14061236	135	2.7	134	76	6	386	17	31	29	21	1.96
14060972--14061193	90	2.5	89	80	3	250	15	30	31	22	1.95
14063382--14063434	26	2.0	26	92	0	88	28	18	24	28	1.98
14063417--14063846	170	2.5	170	79	3	479	24	28	26	20	1.99
14063895--14063946	26	2.0	26	100	0	104	30	19	19	30	1.96
14064867--14065018	45	3.4	45	84	1	180	17	26	33	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14065149--14065376	90	2.5	90	81	9	234	17	32	29	20	1.95
14065147--14065376	45	5.1	44	75	8	169	16	32	30	20	1.95
14065333--14065474	54	2.6	54	80	0	167	17	29	31	21	1.96
14065451--14065498	24	2.0	24	95	0	87	25	37	22	14	1.92
14065475--14066273	45	17.8	44	77	5	501	18	31	31	19	1.95
14065511--14066273	180	4.2	181	82	2	793	17	31	31	19	1.95
14065514--14066266	135	5.6	135	78	3	629	18	31	31	19	1.95
14071910--14072245	45	7.5	45	79	2	289	17	31	31	19	1.95
14071910--14072245	90	3.8	89	77	4	343	17	31	31	19	1.95
14072262--14072445	45	4.1	45	78	4	174	19	33	28	19	1.95
14075305--14075699	197	2.0	196	90	3	625	31	21	27	20	1.98
14082931--14083725	45	17.7	45	70	7	249	19	30	28	20	1.97
14082981--14083495	225	2.3	225	81	3	599	19	29	29	21	1.98
14083251--14083582	179	1.9	180	85	3	463	19	30	28	21	1.98
14083431--14083717	135	2.1	134	80	1	324	21	31	26	21	1.98
14083639--14083736	45	2.2	46	81	7	121	17	36	27	18	1.93
14083819--14084126	45	6.8	45	78	3	230	16	32	30	20	1.95
14083663--14083977	159	2.0	159	80	0	360	20	33	26	20	1.97
14083620--14084022	204	2.0	204	80	3	454	19	33	27	19	1.96
14083824--14084071	135	1.8	134	81	4	311	16	34	29	19	1.94
14083819--14084081	90	2.9	90	80	3	269	16	33	30	19	1.94
14090032--14090084	26	2.0	26	85	7	72	30	16	22	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14089979--14090451	171	2.7	174	70	12	403	24	27	25	23	2.00
14090377--14090429	26	2.0	26	96	0	97	28	18	26	26	1.98
14091292--14091430	45	3.1	45	80	4	145	15	33	29	21	1.95
14091292--14091487	90	2.2	90	78	1	205	17	30	30	21	1.96
14097374--14097577	45	4.5	45	74	6	153	18	31	29	20	1.96
14109955--14110003	25	2.0	25	87	0	71	6	26	36	30	1.81
14109980--14110077	45	2.2	45	83	0	115	12	25	34	27	1.92
14109995--14110138	45	3.2	45	74	3	110	16	27	30	25	1.97
14110165--14110295	45	2.9	45	76	10	133	18	32	31	18	1.95
14110238--14110560	45	7.2	45	75	8	201	20	29	29	21	1.98
14110724--14111061	45	7.5	45	76	4	216	17	31	30	21	1.96
14110747--14110922	89	2.0	90	85	5	241	18	31	31	18	1.95
14110763--14111063	90	3.4	89	80	2	316	16	30	32	20	1.95
14110724--14111063	135	2.5	134	80	2	360	17	31	30	20	1.96
14111037--14111088	25	2.1	25	85	0	68	5	28	40	25	1.78
14111062--14111177	45	2.6	44	80	1	142	13	31	32	21	1.92
14110992--14111131	70	2.0	70	82	0	172	12	31	34	21	1.91
14111167--14111225	25	2.4	25	88	0	82	10	28	33	27	1.89
14111295--14111867	45	12.7	45	73	4	233	19	31	29	19	1.97
14111216--14111591	135	2.8	134	77	6	301	21	29	29	19	1.98
14111632--14111912	135	2.1	135	82	1	339	18	33	28	19	1.96
14119474--14119526	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14119403--14119861	171	2.7	170	71	13	416	22	28	27	21	1.99
14119813--14119887	23	3.1	24	92	5	116	29	16	24	30	1.96
14119819--14119894	26	3.0	26	88	5	113	28	17	25	28	1.97
14119471--14120167	368	1.9	365	87	2	1022	23	29	27	20	1.99
14119867--14121859	171	11.6	171	71	8	1045	23	28	27	21	1.99
14120358--14120410	26	2.0	26	96	0	97	26	18	26	28	1.98
14120038--14121023	345	2.9	344	82	3	1187	23	28	27	20	1.99
14120703--14120755	26	2.0	26	88	0	79	30	15	22	32	1.94
14119839--14121381	516	3.0	511	80	5	1515	23	28	27	20	1.99
14119867--14121213	345	3.9	339	76	7	1106	22	29	27	20	1.99
14121219--14121271	26	2.0	26	96	0	97	26	18	26	28	1.98
14121563--14121615	26	2.0	26	92	0	88	28	18	24	28	1.98
14120899--14121800	344	2.6	345	78	6	851	23	27	26	22	2.00
14122491--14122515	13	1.9	13	100	0	50	24	16	36	24	1.94
14122545--14122639	45	2.1	45	80	7	104	18	31	28	21	1.97
14122576--14122676	45	2.2	45	83	0	121	17	32	30	18	1.95
14122887--14122982	24	4.0	24	95	0	165	21	36	25	16	1.94
14122959--14123142	45	4.1	45	82	8	214	14	29	33	22	1.94
14123122--14123169	25	1.9	25	91	0	78	6	22	43	27	1.77
14123044--14123257	115	1.9	115	81	3	261	14	27	34	23	1.94
14123208--14123451	45	5.4	45	78	1	202	19	32	27	20	1.96
14123147--14123457	45	6.9	45	75	5	173	18	29	30	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14123394--14123523	69	1.9	69	87	3	190	19	33	26	20	1.96
14123485--14123649	89	1.8	90	81	3	208	18	31	32	17	1.95
14123463--14123719	45	5.8	44	73	10	139	18	32	32	16	1.93
14123214--14123699	248	2.0	249	82	2	591	18	32	30	19	1.96
14130277--14130578	165	1.8	165	89	0	469	23	29	27	19	1.98
14131524--14131576	26	2.0	26	92	0	88	26	16	26	30	1.97
14132406--14132458	26	2.0	26	88	0	79	26	16	24	32	1.97
14130864--14136103	895	5.9	887	87	3	7094	25	24	24	25	2.00
14133306--14133358	26	2.0	26	88	0	79	28	20	24	26	1.99
14134203--14134255	26	2.0	26	96	0	97	26	22	26	24	2.00
14135085--14135140	26	2.2	26	96	0	103	30	17	21	30	1.96
14135986--14136038	26	2.0	26	96	0	97	26	20	24	28	1.99
14141616--14141668	26	2.0	26	96	0	97	26	18	26	28	1.98
14142514--14142566	26	2.0	26	85	0	70	28	18	22	30	1.98
14140908--14142718	898	2.0	887	87	2	2624	25	23	24	25	2.00
14142493--14142910	185	2.3	185	84	1	534	22	26	27	22	1.99
14146003--14149409	867	3.9	869	83	5	4230	25	24	25	25	2.00
14149383--14149435	26	2.0	26	92	0	88	28	18	24	28	1.98
14150059--14150108	26	1.9	26	88	8	75	34	20	24	22	1.97
14150858--14150901	11	4.0	11	93	0	70	15	36	27	20	1.93
14150982--14151034	26	2.0	26	92	0	88	26	20	24	28	1.99
14149735--14155142	896	6.1	902	81	8	5848	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14151889--14151941	26	2.0	26	92	0	88	24	18	26	30	1.98
14149735--14155142	897	6.1	894	81	7	5880	25	24	24	25	2.00
14153622--14153673	25	2.0	26	92	3	88	28	19	25	26	1.98
14155337--14155389	26	2.0	26	92	0	88	28	18	24	28	1.98
14157133--14157182	26	1.9	26	100	0	100	28	22	26	24	1.99
14158033--14158085	26	2.0	26	88	0	79	30	22	20	26	1.98
14159791--14159843	26	2.0	26	100	0	106	26	20	26	26	1.99
14161526--14161578	26	2.0	26	92	0	88	24	18	30	26	1.98
14162422--14162474	26	2.0	26	96	0	97	28	20	24	26	1.99
14160669--14165033	896	4.9	893	87	2	5970	25	24	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195