genome.fa.s15.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  100  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31520046--31520441	27	14.8	27	82	4	318	20	16	20	42	1.89
31520055--31520441	54	7.2	54	80	2	379	20	16	19	42	1.89
31520055--31520428	134	2.8	132	80	4	430	20	16	20	42	1.89
31522833--31523017	40	4.7	40	81	6	207	25	27	22	24	2.00
31531549--31531579	6	5.2	6	100	0	62	67	0	32	0	0.91
31536033--31536073	21	2.0	21	90	4	66	36	21	7	34	1.82
31541352--31541409	21	2.8	20	76	7	62	8	8	5	77	1.11
31541361--31541396	12	3.2	12	81	18	51	13	0	8	77	0.98
31553696--31554108	140	3.0	139	87	4	602	38	8	6	46	1.60
31558503--31558573	26	2.7	26	82	0	88	25	26	21	26	1.99
31565443--31565472	15	2.0	15	93	0	51	76	0	10	13	1.01
31566740--31566797	23	2.4	25	85	5	75	22	6	25	44	1.77
31569325--31569378	16	3.3	17	73	17	51	53	1	0	44	1.11
31573387--31573489	47	2.3	45	91	6	172	28	6	7	57	1.53
31573399--31573494	47	2.0	47	100	0	192	27	6	10	56	1.57
31573859--31574170	107	2.9	106	93	0	534	31	18	17	33	1.94
31573859--31574175	106	3.0	106	93	0	535	31	18	17	33	1.94
31593867--31594752	128	6.9	128	90	0	1396	33	21	20	24	1.97
31595473--31595515	4	10.5	4	80	5	50	18	0	4	76	0.95
31595473--31595515	17	2.6	16	92	3	68	18	0	4	76	0.95
31596476--31596506	15	2.1	15	93	0	53	19	0	16	64	1.29
31596757--31597074	108	3.0	106	88	1	474	30	16	16	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31596770--31597082	106	3.0	104	82	5	385	30	16	16	36	1.92
31608213--31608271	30	2.0	30	100	0	118	27	5	10	57	1.52
31610998--31611056	25	2.4	25	83	11	68	67	1	5	25	1.20
31615481--31615606	50	2.6	50	80	2	139	35	8	23	31	1.86
31620913--31620941	5	5.8	5	100	0	58	79	0	0	20	0.74
31625015--31625108	47	2.0	47	91	0	152	27	13	24	34	1.93
31626107--31626174	31	2.2	31	91	0	109	48	8	19	23	1.76
31631172--31631293	22	5.3	22	62	21	61	25	29	11	33	1.91
31631144--31631447	47	6.4	47	91	3	425	26	30	9	32	1.88
31643824--31643870	25	2.0	25	91	8	80	51	8	19	21	1.73
31653242--31653280	21	1.9	21	89	5	62	66	2	25	5	1.25
31661220--31661273	23	2.4	23	93	3	92	22	9	5	62	1.45
31666162--31666202	20	2.0	20	100	0	82	24	7	9	58	1.55
31668359--31668392	18	1.9	18	88	5	52	47	11	0	41	1.40
31670516--31670568	20	2.7	20	74	8	56	67	7	0	24	1.16
31671739--31671782	21	2.1	21	87	4	63	59	0	2	38	1.10
31671769--31671804	17	2.1	17	94	0	63	80	0	2	16	0.83
31673000--31673041	14	2.7	16	78	17	52	71	7	0	21	1.09
31675998--31676051	22	2.5	22	87	6	74	11	9	3	75	1.15
31676031--31676072	9	4.6	9	87	3	57	14	9	0	76	1.02
31677985--31678016	6	5.2	6	96	3	55	15	18	0	65	1.27
31682672--31682729	24	2.4	25	80	8	66	53	0	10	36	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31684422--31684718	131	2.3	131	82	4	339	27	24	18	29	1.98
31684457--31684704	131	1.9	132	85	5	342	27	25	18	27	1.98
31684705--31685201	45	11.0	45	87	0	690	30	24	15	28	1.96
31686466--31686558	46	2.0	46	89	0	141	11	22	20	45	1.84
31687445--31687483	5	7.8	5	88	11	62	0	17	0	82	0.68
31687445--31687484	20	2.1	19	95	4	71	0	17	0	82	0.67
31691242--31691308	24	2.7	25	75	13	66	52	2	11	32	1.53
31691490--31691527	15	2.6	15	87	4	51	60	7	2	28	1.38
31692930--31693070	72	2.0	72	91	2	230	50	16	9	23	1.75
31698514--31698750	128	1.9	128	85	3	334	40	13	13	33	1.83
31698772--31699012	120	2.0	120	92	0	401	37	6	19	36	1.77
31702815--31702957	40	3.6	39	85	6	182	23	29	22	24	1.99
31702815--31702972	79	2.0	79	85	4	212	24	28	21	25	1.99
31702815--31702972	39	4.0	40	90	2	214	24	28	21	25	1.99
31710784--31711007	40	5.6	39	84	5	238	25	27	21	25	1.99
31710784--31711004	118	1.9	120	83	7	290	25	28	21	25	1.99
31713818--31713947	63	2.1	63	100	0	260	19	15	28	36	1.92
31716307--31716398	13	7.0	13	71	9	62	40	4	18	36	1.71
31718827--31718869	20	2.0	20	86	8	59	67	2	0	30	1.03
31726621--31726817	41	4.8	41	91	5	308	29	20	21	27	1.98
31727034--31727131	33	2.9	33	81	7	99	29	10	23	36	1.88
31734300--31734496	41	4.8	41	92	5	317	28	20	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31734711--31734808	33	2.9	33	81	7	99	29	10	23	36	1.88
31735975--31736004	13	2.4	12	89	10	51	30	3	23	43	1.70
31737284--31737446	76	2.1	76	81	8	188	36	6	18	38	1.77
31737641--31737735	41	2.3	41	96	0	172	28	21	24	26	1.99
31739663--31739740	34	2.4	32	80	8	77	38	3	17	39	1.68
31739992--31740136	41	3.5	41	91	1	220	28	18	29	23	1.98
31748075--31748113	20	2.0	20	90	10	62	71	7	2	17	1.21
31749052--31749162	44	2.5	44	82	2	134	28	17	22	31	1.96
31749666--31749760	50	1.9	50	91	4	156	26	27	21	25	1.99
31749804--31749942	45	3.1	45	72	4	138	27	30	18	23	1.98
31749829--31749962	43	3.1	43	72	4	142	26	28	19	26	1.99
31749790--31749962	88	2.0	88	90	0	274	25	28	20	25	1.99
31761940--31761983	21	2.1	21	83	8	54	79	2	4	13	0.98
31762209--31762281	33	2.4	31	86	9	96	63	1	4	31	1.22
31762209--31762257	14	3.3	15	80	8	64	65	2	2	30	1.15
31767241--31767265	13	1.9	13	100	0	50	92	0	8	0	0.40
31770266--31770315	24	2.1	24	100	0	100	36	4	4	56	1.37
31775094--31775185	42	2.2	42	90	0	139	29	6	14	50	1.67
31779612--31779680	26	2.7	26	90	0	111	24	24	28	21	1.99
31789481--31789665	79	2.3	81	82	7	218	24	22	28	24	2.00
31789482--31789665	40	4.6	40	82	9	198	25	22	28	23	2.00
31789534--31789698	79	2.1	79	83	6	201	26	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31812665--31812809	50	2.9	50	81	2	166	34	22	15	26	1.95
31814150--31814289	31	4.5	31	70	12	117	45	15	7	31	1.75
31814112--31814320	92	2.2	92	88	1	301	43	15	7	33	1.75
31818774--31818813	20	2.0	20	90	9	64	30	15	30	25	1.95
31818817--31818855	20	2.0	19	85	5	51	38	12	35	12	1.82
31822369--31822459	48	1.9	47	86	2	128	20	13	26	39	1.89
31828814--31828872	30	1.9	31	86	10	86	44	8	20	27	1.80
31829341--31829628	51	5.7	50	79	3	308	29	15	26	29	1.96
31829341--31829619	102	2.7	102	90	0	425	29	15	26	29	1.96
31835107--31835159	24	2.2	24	96	0	97	22	13	22	41	1.88
31835562--31835612	19	2.8	18	77	8	50	62	0	3	33	1.13
31844620--31844701	38	2.2	38	82	4	94	24	21	10	42	1.85
31844760--31844863	40	2.6	40	82	0	118	24	20	18	37	1.94
31844789--31844867	40	2.0	40	89	0	122	21	18	20	39	1.93
31844792--31844885	40	2.3	40	83	3	109	23	18	21	37	1.94
31847498--31847556	27	2.2	27	81	0	64	32	22	30	15	1.94
31858978--31859044	28	2.4	28	89	0	98	26	29	14	28	1.96
31859773--31860025	125	2.0	125	97	0	479	47	9	7	35	1.66
31860442--31860490	22	2.2	22	81	3	53	42	4	4	48	1.40
31860262--31860545	140	2.0	143	88	2	432	41	5	9	43	1.60
31862824--31862866	16	2.4	19	85	14	65	16	6	4	72	1.24
31864940--31865016	34	2.2	34	79	6	84	33	22	18	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31865479--31865892	27	15.4	27	83	5	426	19	14	20	44	1.86
31865480--31865895	134	3.1	133	82	5	482	19	14	20	45	1.85
31866581--31866627	24	1.9	25	86	4	69	27	34	0	38	1.57
31869368--31869425	28	2.1	28	96	0	107	48	12	17	22	1.80
31874315--31874780	47	9.7	47	95	1	752	32	8	30	28	1.87
31874315--31874780	190	2.4	190	93	1	788	32	8	30	28	1.87
31874899--31875014	37	3.1	37	94	0	196	22	18	32	25	1.97
31878237--31878304	34	2.0	34	94	0	118	29	29	19	22	1.98
31880059--31880573	42	12.3	42	85	0	654	21	17	23	37	1.94
31881463--31881531	22	3.4	21	73	19	65	56	0	10	33	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222