genome.fa.s15.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  41  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12259427--12259503	11	6.6	11	81	10	91	61	0	2	36	1.10
12259420--12259492	36	2.0	36	100	0	146	64	0	2	32	1.08
12259427--12259525	47	2.0	50	90	7	159	63	0	2	34	1.06
12266431--12266496	13	5.1	13	70	7	62	36	21	6	36	1.78
12267150--12267183	17	1.9	18	88	5	52	73	2	2	20	1.09
12274774--12274814	21	2.0	21	81	18	50	31	19	26	21	1.97
12277273--12277345	29	2.4	31	75	4	78	36	17	12	32	1.87
12280623--12280688	29	2.3	29	81	2	71	42	18	15	24	1.88
12281107--12281223	35	3.4	34	71	12	112	28	5	13	52	1.64
12281697--12281728	14	2.3	14	100	0	64	56	0	37	6	1.25
12284281--12284339	28	2.1	28	84	6	75	27	10	18	44	1.82
12297057--12297084	3	9.3	3	100	0	56	64	0	0	35	0.94
12309186--12309214	15	1.9	15	100	0	58	27	0	20	51	1.47
12312729--12312774	24	2.0	23	83	12	58	63	10	21	4	1.44
12313783--12313837	21	2.7	20	83	8	65	34	5	5	54	1.46
12318983--12319120	69	2.0	69	88	0	204	42	12	17	28	1.85
12320699--12320749	26	2.0	26	84	7	68	41	3	7	47	1.51
12323489--12323576	31	2.9	30	75	5	88	40	14	11	32	1.82
12326450--12326541	22	4.2	22	86	5	105	30	28	0	41	1.56
12326450--12326541	44	2.1	44	84	8	116	30	28	0	41	1.56
12326491--12326593	52	2.0	51	81	12	122	33	33	0	33	1.58
12326543--12326584	22	1.9	22	90	0	66	33	33	0	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12326626--12326681	28	2.0	29	92	3	96	37	0	1	60	1.07
12326626--12326689	28	2.2	29	88	2	94	37	0	1	60	1.06
12326773--12326835	24	2.7	23	75	18	58	28	0	4	66	1.12
12328967--12329002	18	2.1	18	89	5	56	50	19	0	30	1.48
12328978--12329537	28	21.1	27	76	17	432	47	23	0	29	1.52
12328955--12329042	23	3.8	23	77	14	101	45	26	0	28	1.54
12329024--12329091	33	2.1	33	94	5	120	48	22	0	29	1.51
12329044--12329249	23	8.2	23	75	17	144	47	23	0	29	1.52
12328978--12329545	51	10.7	51	74	19	370	47	23	0	29	1.52
12329108--12329265	23	6.2	24	78	17	169	46	24	0	28	1.53
12329235--12329421	34	5.5	34	70	22	124	47	24	0	27	1.52
12329284--12329545	23	10.2	23	70	20	157	47	23	0	29	1.52
12329350--12329421	34	2.1	34	97	0	135	45	30	0	23	1.53
12332731--12332967	124	1.9	124	88	3	361	32	23	14	29	1.94
12332713--12332992	124	2.3	124	84	4	359	32	24	15	28	1.95
12342096--12342121	3	8.7	3	100	0	52	30	0	0	69	0.89
12343503--12343549	24	2.0	24	87	8	69	61	0	2	36	1.08
12345408--12345443	11	3.3	11	100	0	72	58	16	0	25	1.38
12347191--12347256	31	2.1	31	88	0	96	24	22	19	33	1.97
12355709--12355852	48	3.0	48	94	0	261	30	27	11	29	1.92
12365975--12366054	24	3.3	24	87	0	106	52	6	2	38	1.40
12370847--12371045	43	4.6	43	88	3	285	33	27	16	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12371735--12371765	4	7.8	4	100	0	62	51	22	0	25	1.48
12373641--12373665	10	2.5	10	100	0	50	24	28	16	32	1.96
12378208--12378242	10	3.5	10	96	0	61	25	28	14	31	1.95
12380218--12380262	17	2.6	17	89	6	65	20	0	42	37	1.52
12380976--12381012	9	4.1	9	92	0	65	45	13	10	29	1.77
12381226--12381285	30	2.0	31	83	9	79	20	38	0	41	1.52
12384080--12384130	22	2.4	21	76	3	57	47	3	9	39	1.55
12384170--12384217	25	2.0	24	84	12	62	62	0	8	29	1.24
12384179--12384217	12	3.2	12	82	17	53	61	0	7	30	1.24
12387269--12387348	38	2.1	39	92	2	135	21	3	41	33	1.71
12389787--12389850	18	3.1	23	70	30	63	43	9	0	46	1.35
12390092--12390120	12	2.4	12	100	0	58	48	10	0	41	1.37
12390116--12390812	9	80.4	9	66	21	187	48	17	2	31	1.59
12390145--12390294	16	8.4	16	68	22	59	48	19	2	30	1.60
12390165--12390561	25	15.6	26	68	16	149	48	18	2	30	1.61
12390190--12390561	53	6.8	52	63	22	118	48	18	2	30	1.61
12390224--12390767	41	13.4	40	69	20	243	49	18	2	30	1.59
12390242--12390449	16	12.5	16	69	20	90	49	18	1	29	1.59
12390355--12390408	22	2.5	22	74	17	58	51	20	1	25	1.57
12390349--12390448	35	3.0	34	85	11	127	50	21	2	27	1.60
12390143--12390646	278	1.8	278	98	0	972	49	18	1	30	1.59
12390530--12390768	16	15.1	16	67	23	123	49	17	1	31	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12390546--12390646	44	2.5	37	78	19	130	51	16	0	31	1.45
12390582--12390783	25	8.3	25	75	12	133	50	17	1	30	1.55
12390931--12390989	28	2.1	29	93	3	102	22	11	10	55	1.65
12392571--12392641	21	3.4	21	82	0	97	32	15	47	4	1.65
12392983--12393184	43	4.7	43	83	8	241	26	18	30	24	1.98
12392983--12393184	86	2.3	86	84	5	275	26	18	30	24	1.98
12393153--12393225	33	2.2	33	82	4	85	20	19	32	27	1.97
12393297--12393451	73	2.1	73	89	0	238	24	23	23	29	1.99
12393351--12393791	113	3.9	114	87	0	607	28	24	20	26	1.99
12393351--12393781	227	1.9	227	86	0	612	28	24	20	26	1.99
12412919--12412980	30	2.1	30	90	0	97	24	3	14	58	1.51
12417397--12417530	44	3.1	44	66	6	119	27	23	18	29	1.98
12417385--12419011	87	18.9	85	85	5	1301	24	23	21	29	1.99
12417637--12418997	87	15.6	87	91	2	2158	24	23	21	29	1.99
12417637--12418997	437	3.1	437	95	0	2356	24	23	21	29	1.99
12418985--12419150	44	3.8	44	90	0	242	28	23	18	29	1.98
12418961--12419150	88	2.2	88	87	3	276	28	21	19	30	1.98
12421451--12421501	16	3.2	16	78	15	54	1	11	3	82	0.89
12422575--12422639	24	2.6	25	82	9	78	56	6	15	21	1.60
12425698--12425731	18	1.9	18	88	5	52	50	0	5	44	1.26
12425847--12425882	13	2.8	13	86	0	54	72	2	2	22	1.11
12426724--12426808	41	2.1	41	90	0	134	30	14	32	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12428881--12428973	37	2.4	39	85	7	118	52	3	1	43	1.24
12430048--12430092	15	3.0	15	86	0	63	26	0	6	66	1.16
12430055--12430105	20	2.7	19	85	11	61	27	0	7	64	1.21
12430898--12430928	7	4.4	7	100	0	62	25	0	0	74	0.82
12436439--12436551	60	1.9	60	84	0	154	38	15	10	35	1.83
12436921--12437268	113	3.1	111	83	4	435	27	24	21	26	1.99
12437377--12437491	41	2.8	40	81	2	122	22	20	30	26	1.98
12439531--12439561	16	1.9	16	93	0	53	35	25	6	32	1.82
12441858--12441956	50	2.0	50	97	0	189	43	4	6	46	1.47
12442155--12442240	35	2.4	37	90	7	140	47	20	0	31	1.51
12442177--12442242	13	5.4	13	72	16	61	48	21	0	30	1.50
12442158--12442228	9	8.2	9	73	20	62	49	21	0	29	1.50
12442325--12442466	60	2.3	59	87	4	194	46	16	2	33	1.62
12447995--12448034	21	1.9	21	89	0	62	37	17	42	2	1.63
12448063--12448104	21	2.0	21	90	0	66	30	16	40	11	1.85
12448426--12448835	42	9.7	42	76	6	299	25	20	24	29	1.99
12448464--12448827	85	4.3	87	75	6	316	24	20	24	30	1.98
12458011--12458109	28	3.6	27	76	9	101	32	11	27	29	1.91
12459058--12459190	25	5.6	24	72	16	98	27	12	15	45	1.81
12459047--12459214	22	7.2	22	69	20	101	27	11	15	45	1.80
12459045--12459256	47	4.5	47	86	2	248	28	11	15	43	1.82
12465239--12465263	10	2.5	10	100	0	50	8	16	0	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12466392--12466477	27	3.1	27	83	8	86	52	1	1	45	1.16
12466395--12466463	23	3.1	23	79	8	63	49	1	1	47	1.19
12466422--12466465	23	2.0	22	90	4	70	50	2	2	45	1.27
12471994--12472092	23	4.3	23	93	0	171	22	22	25	30	1.99
12473846--12474121	27	10.3	27	77	10	255	21	15	18	44	1.86
12473845--12474127	81	3.5	79	86	5	338	21	15	18	44	1.86
12476722--12476783	14	4.4	14	70	8	54	33	1	3	61	1.22
12476751--12476783	13	2.4	14	95	5	59	42	0	0	57	0.98
12478227--12478330	50	2.1	50	80	3	111	24	17	29	28	1.97
12478985--12479045	22	2.9	21	83	9	79	18	19	14	47	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222