genome.fa.s15.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  120  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38966058--38966098	20	2.0	20	85	0	55	31	7	4	56	1.48
38967508--38967536	14	2.0	15	93	6	51	82	0	0	17	0.66
38970294--38970411	27	4.4	28	81	8	129	38	20	20	21	1.94
38971503--38971538	16	2.2	16	95	0	63	41	5	30	22	1.76
38971825--38971876	22	2.4	21	79	17	54	55	5	0	38	1.24
38971751--38972041	120	2.4	119	93	2	485	52	4	1	42	1.27
38971968--38972035	26	2.6	27	81	11	88	60	1	0	38	1.06
38989077--38989274	105	1.9	106	88	3	301	36	18	15	29	1.91
38989945--38989980	10	3.6	10	88	0	54	36	0	11	52	1.37
38990369--38990445	21	3.6	20	71	23	59	66	1	3	28	1.17
38990396--38990437	13	3.1	13	86	13	50	64	0	4	30	1.14
38990406--38990450	3	16.0	3	77	13	51	66	2	2	28	1.15
38990412--38990451	20	2.0	20	85	9	55	62	2	5	30	1.29
38992522--38992547	11	2.4	11	100	0	52	38	7	0	53	1.30
38992522--38992575	26	2.1	26	89	6	83	37	5	0	57	1.22
38992547--38992643	40	2.2	45	84	15	134	34	2	1	62	1.13
38993693--38993717	6	4.2	6	100	0	50	36	16	32	16	1.90
39004771--39004886	57	2.0	56	85	6	153	46	6	18	28	1.74
39004824--39004937	51	2.2	51	84	6	142	44	9	20	25	1.81
39005187--39005228	20	2.1	20	100	0	84	47	4	14	33	1.65
39018687--39018735	20	2.6	19	78	12	57	40	2	4	53	1.32
39027813--39027916	51	2.0	51	100	0	208	19	27	7	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39037997--39038078	39	2.1	38	86	2	110	20	2	25	51	1.60
39038064--39038110	22	2.2	22	84	3	60	23	0	40	36	1.55
39040595--39040674	31	2.6	31	86	7	117	18	13	20	47	1.82
39041168--39041209	15	2.8	15	88	0	57	38	2	0	59	1.10
39041184--39041221	17	2.2	18	90	4	60	36	2	0	60	1.11
39041268--39041336	12	5.4	12	68	19	50	52	10	0	37	1.36
39041280--39041313	16	2.1	16	88	0	50	55	11	0	32	1.36
39041339--39041413	20	4.1	19	69	20	61	50	16	1	32	1.53
39041395--39041737	41	8.4	41	75	16	220	46	20	0	31	1.55
39041420--39041721	16	18.7	16	70	18	110	47	20	0	31	1.55
39041447--39041578	9	14.6	9	71	13	92	42	20	1	35	1.62
39041359--39041705	75	4.7	74	75	15	269	46	20	0	31	1.57
39041387--39041737	109	3.2	108	83	10	416	47	20	0	31	1.55
39041332--39041737	25	16.4	25	75	17	220	47	20	0	31	1.57
39041346--39041737	50	7.7	50	76	17	283	47	20	0	31	1.56
39044371--39044563	42	4.5	42	85	6	255	27	18	27	25	1.98
39044363--39044563	85	2.4	85	86	4	271	27	18	27	25	1.98
39053798--39053829	12	2.6	13	90	9	50	15	0	0	84	0.63
39061733--39061972	29	8.2	29	81	3	248	21	27	13	37	1.91
39061733--39061972	117	2.1	117	88	3	349	21	27	13	37	1.91
39065634--39065677	20	2.2	20	83	0	52	45	13	0	40	1.44
39065901--39065928	4	7.0	4	100	0	56	25	50	0	25	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39067392--39067640	110	2.3	110	82	6	292	27	25	17	29	1.98
39067703--39067744	20	2.1	20	95	0	75	14	30	28	26	1.95
39071836--39071868	17	1.9	17	100	0	66	48	0	9	42	1.35
39079862--39079892	6	5.2	6	100	0	62	35	0	32	32	1.58
39082426--39082496	36	2.0	36	91	0	115	50	22	14	12	1.76
39095203--39095275	12	6.1	12	70	17	53	13	23	1	61	1.40
39095316--39095362	21	2.1	23	84	7	62	14	14	2	68	1.31
39097520--39097564	20	2.2	20	85	14	58	53	13	4	28	1.59
39099474--39099567	33	2.9	32	81	9	93	10	23	1	64	1.31
39099504--39099568	27	2.5	26	80	7	69	12	26	0	61	1.31
39100816--39100897	41	2.0	41	92	4	139	31	8	10	48	1.68
39104308--39104387	41	2.0	41	94	0	142	30	5	13	51	1.63
39108696--39108722	13	2.1	13	100	0	54	70	0	14	14	1.17
39117650--39117692	17	2.5	17	84	3	50	41	2	0	55	1.12
39118072--39118142	22	3.2	22	86	7	99	33	26	1	38	1.65
39118113--39118171	30	2.0	30	93	0	100	32	33	0	33	1.58
39118143--39118184	22	1.9	22	90	0	66	33	33	0	33	1.58
39118223--39118283	29	2.1	29	84	6	79	37	0	1	60	1.07
39118374--39118407	15	2.3	15	90	5	52	26	0	5	67	1.13
39119943--39120585	29	22.9	28	76	9	442	40	23	1	34	1.64
39119909--39119987	35	2.3	35	93	4	133	36	35	1	26	1.65
39119909--39120013	35	3.2	34	80	15	130	38	32	0	28	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39120121--39120186	28	2.7	23	77	22	80	43	16	0	39	1.48
39119962--39120588	223	2.8	219	87	6	823	40	23	1	34	1.64
39119943--39120546	166	3.6	165	85	6	722	40	24	1	33	1.63
39120406--39120451	23	2.0	23	95	0	83	45	21	2	30	1.64
39125682--39125736	27	2.0	27	85	0	74	54	12	7	25	1.63
39126385--39126450	31	2.1	31	88	5	98	34	10	24	30	1.89
39128470--39128698	100	2.3	101	89	1	361	30	24	13	31	1.93
39128556--39128697	33	4.3	31	71	7	86	28	23	14	33	1.94
39137048--39137085	17	2.3	17	82	17	53	68	10	0	21	1.19
39142899--39143137	87	2.7	87	88	2	347	36	18	16	28	1.93
39144557--39144609	26	2.1	25	85	3	70	28	35	16	18	1.93
39165572--39165703	69	1.9	67	87	3	192	33	12	11	43	1.78
39170394--39170510	23	5.1	23	69	10	78	26	21	19	32	1.97
39174272--39174769	132	3.8	131	73	8	401	30	13	21	34	1.92
39179589--39179634	10	4.5	10	80	2	56	26	17	4	52	1.63
39179566--39179645	20	4.0	20	70	20	67	27	17	3	51	1.62
39180674--39180712	20	2.0	20	85	10	53	76	10	2	10	1.10
39183933--39184115	79	2.3	81	84	7	232	25	27	22	24	2.00
39183912--39184115	40	5.1	40	81	7	227	25	28	22	24	1.99
39185253--39185372	56	2.1	56	98	0	231	22	23	9	45	1.81
39191808--39191990	79	2.3	81	84	7	232	25	27	22	24	2.00
39191787--39191990	40	5.1	40	81	7	227	25	28	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39193570--39193632	30	2.1	30	91	5	101	23	30	25	20	1.99
39200983--39201013	16	1.9	16	93	0	53	22	16	22	38	1.92
39204519--39204657	42	3.2	43	81	7	149	30	27	17	24	1.98
39207709--39207935	40	5.7	40	93	0	384	22	26	20	30	1.98
39216293--39216480	40	4.7	40	92	0	313	21	27	20	30	1.98
39220333--39220423	42	2.2	42	87	0	137	20	34	19	25	1.97
39220530--39220571	21	2.0	21	95	0	75	45	23	9	21	1.81
39228907--39228939	5	6.6	5	92	0	57	78	18	3	0	0.87
39229136--39229173	15	2.5	15	86	0	58	76	0	2	21	0.91
39229136--39229184	15	3.3	15	80	5	55	71	0	6	22	1.08
39232373--39232448	37	2.1	37	89	0	116	26	32	18	22	1.97
39232569--39232908	47	7.2	47	89	1	473	29	30	8	31	1.87
39232624--39232908	143	2.0	143	92	0	480	30	29	8	31	1.86
39234790--39234940	43	3.5	43	89	0	230	31	25	15	27	1.96
39235055--39235261	31	6.7	31	85	1	274	42	17	9	30	1.80
39235055--39235272	92	2.4	92	87	2	285	43	17	8	30	1.79
39237835--39237883	17	3.0	16	75	16	55	24	16	22	36	1.94
39237821--39237891	33	2.2	32	82	7	90	30	18	18	32	1.95
39239314--39239504	95	2.0	95	92	2	321	40	10	16	32	1.82
39239658--39239748	20	4.5	20	73	5	76	18	29	17	34	1.94
39239624--39239771	41	3.6	41	84	3	192	20	29	16	33	1.95
39242625--39242673	22	2.3	22	79	13	57	6	20	0	73	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39244652--39244716	27	2.4	28	87	5	89	33	12	20	33	1.89
39244886--39245114	27	8.5	27	84	1	253	43	12	19	24	1.85
39252073--39252132	26	2.3	26	83	11	70	53	10	0	36	1.35
39252099--39252155	26	2.2	26	81	6	62	54	5	0	40	1.23
39252657--39252694	16	2.3	17	86	4	51	34	7	7	50	1.61
39252413--39252877	246	1.9	241	83	4	601	42	7	11	38	1.69
39255104--39255503	43	9.3	43	87	1	455	29	30	17	22	1.97
39255559--39255584	5	5.2	5	100	0	52	19	0	0	80	0.71
39259776--39259819	23	1.9	23	86	9	63	68	2	20	9	1.28
39261866--39261920	27	2.0	27	89	0	83	40	27	20	12	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222