genome.fa.s15.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  119  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38555269--38555323	20	2.8	20	85	0	74	41	18	30	9	1.81
38555997--38556032	17	2.1	17	90	10	56	41	16	0	41	1.48
38561475--38561778	47	6.4	47	91	3	425	32	9	30	26	1.88
38561629--38561750	22	5.3	22	62	21	61	33	11	29	25	1.91
38579183--38579207	12	2.1	12	100	0	50	48	0	28	24	1.52
38587619--38587762	59	2.4	60	87	1	218	44	15	12	27	1.83
38587625--38587715	28	3.1	30	71	15	89	40	15	13	30	1.85
38587717--38587824	31	3.5	31	72	6	87	39	14	14	30	1.87
38590422--38590486	28	2.3	28	100	0	130	32	20	23	24	1.98
38611263--38611298	17	2.1	17	90	10	56	41	0	16	41	1.48
38611969--38612045	39	2.0	39	84	0	100	9	28	18	44	1.80
38611969--38612045	20	3.9	20	77	3	84	9	28	18	44	1.80
38623851--38623929	20	4.0	20	71	0	59	34	20	32	12	1.90
38635262--38635344	34	2.4	36	78	12	91	38	18	9	33	1.83
38635514--38635747	41	5.7	42	86	4	334	24	27	19	28	1.99
38635514--38635758	123	2.0	124	88	5	372	24	27	20	28	1.99
38637453--38638052	47	12.6	49	92	2	944	29	29	8	32	1.87
38637453--38638052	192	3.1	192	92	1	992	29	29	8	32	1.87
38637453--38638052	241	2.5	238	94	1	1033	29	29	8	32	1.87
38641072--38641121	15	3.4	15	75	22	52	46	12	2	40	1.52
38641777--38641804	14	2.0	14	100	0	56	35	21	7	35	1.81
38642987--38643033	24	2.0	24	91	0	76	31	12	21	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38645824--38645850	12	2.2	12	100	0	54	51	7	0	40	1.30
38646331--38646508	27	6.6	27	83	5	198	27	15	28	29	1.96
38646332--38646487	82	1.9	81	88	3	233	26	15	28	29	1.96
38648683--38648719	17	2.2	17	95	0	65	51	8	18	21	1.72
38667601--38667637	17	2.2	17	95	0	65	21	18	8	51	1.72
38669828--38669884	24	2.4	24	84	0	87	33	24	10	31	1.89
38674169--38674368	78	2.6	76	75	7	199	36	4	16	43	1.68
38674749--38674993	41	6.0	41	87	1	330	27	19	28	25	1.99
38674751--38674987	123	1.9	123	90	3	379	27	18	28	24	1.98
38676765--38676807	18	2.4	18	77	14	52	46	6	9	37	1.63
38677254--38677431	28	6.4	28	88	2	234	26	12	28	32	1.93
38677279--38677431	83	1.8	83	88	2	236	27	13	27	32	1.93
38682979--38683050	25	2.9	25	85	0	108	26	23	20	29	1.99
38685846--38685939	34	2.9	32	79	6	107	42	14	9	32	1.79
38686573--38686740	76	2.2	78	82	7	200	40	17	3	38	1.67
38686843--38686901	25	2.4	25	97	0	109	47	10	5	37	1.59
38691322--38691442	60	2.0	60	100	0	242	36	6	0	57	1.25
38695962--38696001	13	2.9	14	81	7	55	82	5	0	12	0.82
38699920--38699972	23	2.4	22	76	20	56	9	18	1	69	1.25
38701261--38701294	9	3.9	9	88	7	52	8	8	11	70	1.34
38707425--38707720	147	2.0	147	92	0	493	51	7	13	28	1.67
38708412--38708465	28	1.9	28	88	0	81	51	1	1	44	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38710471--38710552	27	3.1	26	76	11	67	68	1	2	28	1.10
38717777--38717857	36	2.2	36	100	0	162	25	25	11	37	1.89
38723130--38723225	50	1.9	50	82	4	122	36	15	14	33	1.88
38723220--38723268	23	2.3	22	89	10	75	28	20	14	36	1.92
38723238--38723303	19	3.5	19	77	4	62	27	22	15	34	1.94
38725192--38725234	21	2.0	21	90	0	68	34	2	13	48	1.56
38726394--38726441	22	2.2	22	84	0	60	50	14	22	12	1.77
38726828--38726946	22	5.6	22	73	14	90	60	0	1	37	1.07
38726822--38726926	11	9.9	11	79	12	114	57	0	1	40	1.10
38726822--38726955	53	2.6	53	90	4	193	59	0	1	38	1.06
38726881--38726955	20	4.3	19	69	30	76	64	0	1	34	1.02
38726870--38726998	31	4.2	31	80	8	156	63	0	2	34	1.07
38726912--38726957	20	2.3	20	100	0	92	67	0	0	32	0.91
38727369--38727428	28	2.2	28	93	3	104	43	6	8	41	1.61
38727844--38727914	33	2.1	34	92	2	117	52	7	21	19	1.70
38728561--38728623	20	3.2	20	72	16	60	74	0	19	6	1.02
38740157--38740418	40	6.7	40	87	6	331	24	22	27	25	2.00
38740158--38740451	80	3.7	77	79	11	262	25	22	27	24	2.00
38742604--38742837	118	2.0	118	97	0	441	32	20	17	29	1.95
38744093--38744331	50	4.7	50	84	8	270	27	21	28	22	1.99
38751617--38751705	9	9.9	9	80	4	108	41	22	10	25	1.85
38753090--38753352	40	6.6	40	88	3	316	26	27	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38753284--38753361	40	1.9	41	82	10	97	26	28	21	23	1.99
38760420--38760682	40	6.6	40	88	3	316	26	27	20	24	1.99
38760614--38760691	40	1.9	41	82	10	97	26	28	21	23	1.99
38767889--38768151	40	6.6	40	86	3	298	27	27	20	24	1.99
38768083--38768160	40	1.9	41	82	10	97	26	28	21	23	1.99
38774685--38774723	20	2.1	19	85	9	53	51	17	28	2	1.59
38778091--38778212	44	3.0	41	78	12	135	36	27	16	20	1.94
38790481--38790520	18	2.2	18	86	0	53	12	2	45	40	1.56
38791575--38791669	30	3.0	32	79	13	97	26	24	24	25	2.00
38791603--38791687	30	3.0	28	86	8	118	27	22	25	24	2.00
38791803--38791879	26	3.0	26	88	0	100	38	24	20	15	1.92
38792054--38792356	81	3.8	81	79	7	298	21	17	16	43	1.87
38792052--38792356	27	11.3	27	76	9	268	21	18	16	43	1.88
38796193--38796425	27	8.6	27	88	3	180	30	28	14	26	1.95
38796193--38796425	55	4.3	54	88	3	315	30	28	14	26	1.95
38796193--38796425	82	2.9	82	89	1	335	30	28	14	26	1.95
38804471--38804691	27	8.6	27	84	7	214	29	28	14	27	1.96
38807632--38807864	49	4.7	50	84	2	299	24	18	27	28	1.98
38818837--38818892	10	5.4	10	78	6	58	16	8	5	69	1.32
38818845--38818892	11	4.5	11	76	7	55	16	10	6	66	1.41
38818837--38818892	21	2.7	21	86	2	69	16	8	5	69	1.32
38829497--38829542	16	2.9	16	84	9	60	54	0	4	41	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38831774--38831955	29	6.3	29	81	5	215	24	24	13	37	1.92
38831774--38831955	87	2.1	87	85	6	244	24	24	13	37	1.92
38839179--38839426	87	2.9	87	77	10	245	23	24	14	36	1.93
38839222--38839426	29	7.1	29	80	6	211	24	23	14	37	1.92
38841658--38841865	28	7.6	27	94	2	326	31	28	12	26	1.93
38841658--38841865	55	3.8	55	92	1	344	31	28	12	26	1.93
38841658--38841865	111	1.9	110	94	1	371	31	28	12	26	1.93
38874739--38874834	27	3.4	28	89	2	131	27	12	28	32	1.93
38874767--38874849	27	3.0	27	85	5	87	30	10	25	33	1.90
38874739--38874850	28	4.0	27	82	6	89	28	11	25	33	1.91
38893996--38894097	44	2.3	44	81	1	114	27	22	12	37	1.91
38901043--38901090	19	2.7	17	87	12	78	29	18	14	37	1.91
38903003--38903209	28	7.4	28	89	2	310	33	22	21	22	1.97
38903316--38903365	26	1.9	26	95	0	91	36	18	22	24	1.95
38903329--38903385	27	2.2	26	83	3	69	36	17	22	22	1.94
38903598--38903739	27	5.3	27	84	0	176	18	18	21	41	1.90
38905410--38905446	11	3.4	11	92	0	56	21	5	43	29	1.75
38918566--38918636	25	2.8	25	86	0	97	29	19	16	33	1.94
38921172--38921280	54	2.0	54	98	0	209	35	19	12	32	1.89
38929117--38929151	17	2.1	17	100	0	70	45	17	0	37	1.48
38930830--38930855	7	3.7	7	100	0	52	57	0	0	42	0.98
38939400--38939443	20	2.2	19	84	15	54	6	22	2	68	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38945779--38945841	30	2.1	30	84	0	81	39	7	20	31	1.81
38954534--38954602	25	2.6	25	79	6	75	71	7	5	15	1.29
38956324--38956368	6	8.0	6	85	7	51	44	0	20	35	1.51
38956600--38956883	30	9.2	30	73	12	177	37	14	25	22	1.92
38956600--38956858	98	2.8	90	82	8	247	37	13	26	22	1.91
38956652--38956900	128	1.9	128	82	1	311	38	15	24	21	1.92
38963098--38963650	306	1.8	304	90	1	892	37	9	16	36	1.82
38964537--38964873	30	11.3	30	71	11	106	39	14	22	23	1.90
38964739--38964819	29	2.7	29	85	11	110	43	12	23	20	1.86
38964537--38964873	150	2.3	149	85	6	448	39	14	22	23	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222