genome.fa.s15.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  157  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50672491--50672530	19	2.1	19	86	9	55	50	5	5	40	1.46
50677569--50677613	11	3.9	12	78	18	51	46	0	28	24	1.53
50687929--50687966	18	2.1	18	100	0	76	26	10	5	57	1.53
50693975--50694162	45	4.2	45	84	4	220	22	14	27	36	1.93
50693978--50694154	90	2.0	88	86	2	246	22	14	27	35	1.93
50700793--50700826	11	3.0	11	83	8	50	32	2	8	55	1.45
50702707--50702825	44	2.7	44	84	3	159	29	18	20	31	1.96
50703033--50703220	45	4.3	42	75	11	144	34	17	20	28	1.95
50703051--50703166	42	2.7	42	82	6	117	34	14	24	26	1.94
50704921--50705030	53	2.1	54	85	10	156	33	6	1	58	1.34
50704941--50705046	53	2.0	55	90	7	173	33	6	1	58	1.35
50713411--50713456	4	11.8	4	82	13	60	73	0	2	23	0.94
50714682--50714904	44	5.0	44	83	4	227	30	21	15	33	1.94
50714682--50714903	88	2.5	86	82	6	250	30	21	15	32	1.94
50721631--50721679	4	12.5	4	79	12	57	71	4	0	24	1.03
50721631--50721679	11	4.5	11	72	23	50	71	4	0	24	1.03
50726862--50726895	17	2.0	17	100	0	68	35	0	5	58	1.22
50740293--50740344	26	2.0	26	88	0	77	30	30	17	21	1.96
50740436--50740555	26	4.6	26	72	0	105	21	27	17	33	1.96
50740427--50740555	52	2.5	52	78	5	127	23	25	17	34	1.96
50746575--50746621	22	2.1	23	84	11	62	44	4	12	38	1.62
50746575--50746623	23	2.1	23	82	14	57	44	4	12	38	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50757159--50757200	22	1.9	22	90	0	66	38	2	16	42	1.61
50757292--50757545	127	2.0	127	99	0	499	29	14	12	43	1.82
50759959--50760182	40	5.7	40	84	7	255	25	22	27	25	2.00
50759959--50760182	79	2.8	79	83	9	242	25	22	27	25	2.00
50760046--50760215	79	2.2	79	81	7	186	27	20	26	25	1.99
50767440--50767663	40	5.7	40	84	7	255	25	22	27	25	2.00
50767440--50767663	79	2.8	79	83	9	242	25	22	27	25	2.00
50767527--50767696	79	2.2	79	81	7	186	27	20	26	25	1.99
50770312--50770375	25	2.6	25	79	0	74	29	25	17	28	1.97
50773243--50773450	27	7.7	27	82	5	213	43	21	14	20	1.87
50773243--50773476	82	2.9	82	81	8	235	43	20	14	21	1.88
50773323--50773466	27	5.3	26	78	15	132	43	20	14	20	1.87
50773648--50773725	26	3.0	26	72	7	68	20	19	19	41	1.91
50773834--50773882	24	2.0	24	92	0	80	24	24	24	26	2.00
50780779--50781026	27	9.2	27	83	4	268	45	19	14	20	1.85
50782559--50782599	18	2.3	18	84	16	50	24	7	4	63	1.40
50783629--50783690	17	3.4	17	69	26	54	27	1	24	46	1.62
50783602--50783737	39	3.5	39	91	0	218	28	3	22	45	1.69
50789926--50790066	39	3.6	39	87	0	210	30	4	19	45	1.70
50792602--50792634	13	2.6	13	90	4	50	21	0	3	75	0.93
50792591--50792633	17	2.4	18	88	3	61	20	2	4	72	1.14
50793716--50793826	56	2.0	57	87	1	161	45	7	18	28	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50795217--50795272	28	2.0	28	100	0	112	32	10	10	46	1.73
50797699--50797744	16	2.9	16	87	6	67	32	15	2	50	1.56
50798633--50798681	7	7.0	7	90	0	80	42	0	0	57	0.99
50798633--50798690	21	2.8	21	82	10	66	41	1	0	56	1.09
50798699--50798737	21	1.9	21	84	5	53	43	2	2	51	1.29
50801977--50802042	35	1.9	34	84	9	89	53	1	3	42	1.25
50802166--50802231	19	3.3	19	72	12	60	59	19	3	18	1.51
50802150--50802213	22	3.0	22	66	13	62	57	20	7	14	1.61
50802150--50802231	41	2.0	41	95	0	146	57	20	6	15	1.60
50802503--50802567	30	2.2	30	83	5	78	26	46	0	27	1.53
50802783--50802840	18	3.2	17	76	16	55	24	24	0	51	1.48
50803111--50803145	18	1.9	18	88	11	54	34	5	0	60	1.21
50803794--50803845	23	2.3	23	79	0	59	34	7	30	26	1.85
50808105--50808401	146	2.0	148	84	3	395	32	12	14	40	1.83
50809866--50810188	41	7.9	40	84	4	353	30	27	21	20	1.98
50810356--50810381	12	2.2	12	100	0	52	46	30	15	7	1.74
50814560--50814620	21	2.9	21	85	0	77	24	9	36	29	1.88
50818283--50818310	13	2.2	13	100	0	56	35	0	35	28	1.58
50822895--50822955	30	2.0	30	93	0	104	29	31	21	18	1.96
50825063--50825158	39	2.5	39	92	0	165	27	19	15	37	1.92
50825171--50825225	16	3.4	16	73	26	62	20	32	3	43	1.69
50825168--50825228	32	1.9	32	100	0	122	22	31	3	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50829506--50829615	39	2.7	41	84	5	129	28	15	18	38	1.91
50829520--50829615	39	2.5	39	87	0	147	27	17	16	38	1.91
50829628--50829682	16	3.4	16	71	26	53	20	30	3	45	1.68
50829625--50829685	32	1.9	32	96	0	113	22	29	3	44	1.69
50831337--50831416	20	3.9	20	82	6	88	28	22	21	27	1.99
50836470--50836521	26	2.0	25	85	3	68	57	13	0	28	1.36
50838111--50838174	33	1.9	33	93	0	110	43	17	23	15	1.87
50844802--50844859	29	2.0	29	100	0	116	13	17	20	48	1.81
50845725--50845749	2	12.5	2	100	0	50	0	48	0	52	1.00
50846125--50846175	23	2.2	23	89	0	75	29	9	19	41	1.84
50856789--50856826	20	1.9	20	94	0	67	31	21	21	26	1.98
50859255--50859281	4	6.8	4	100	0	54	22	0	0	77	0.76
50860153--50860224	28	2.4	29	81	9	74	36	4	5	54	1.43
50862433--50862490	24	2.4	25	83	8	68	29	22	3	44	1.69
50865363--50865428	20	3.4	18	75	22	55	77	0	22	0	0.77
50865360--50865428	31	2.3	30	85	9	88	76	0	23	0	0.78
50867134--50867194	3	19.7	3	80	12	70	63	3	3	29	1.26
50867124--50867194	22	3.2	22	88	7	83	63	4	2	29	1.27
50869288--50869378	45	2.0	45	91	0	146	29	21	24	24	1.99
50869426--50869622	44	4.5	44	74	9	163	30	18	21	29	1.97
50869420--50869714	88	3.4	88	79	10	298	31	20	21	27	1.98
50869594--50869753	44	3.6	45	77	5	137	29	20	23	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50891082--50891139	26	2.2	26	87	0	80	17	24	22	36	1.95
50891091--50891212	26	4.9	26	68	12	85	20	24	21	33	1.97
50891169--50891220	25	2.1	25	85	0	68	19	26	23	30	1.98
50891266--50891328	25	2.5	24	84	5	90	25	26	15	31	1.96
50899437--50899495	26	2.3	23	80	13	64	66	5	1	27	1.22
50899447--50899498	23	2.3	23	83	9	63	65	3	1	28	1.21
50899522--50899575	24	2.2	24	87	6	74	57	7	3	31	1.44
50900599--50901201	50	12.2	50	78	6	341	24	18	23	34	1.96
50900650--50901201	100	5.6	100	77	8	452	24	17	23	34	1.96
50900650--50901135	150	3.3	149	82	4	574	24	18	22	34	1.96
50902538--50902577	12	3.2	12	82	6	53	5	7	0	87	0.66
50911271--50911320	20	2.5	19	84	15	57	18	0	6	76	0.99
50911750--50911906	38	4.2	38	83	0	199	33	30	21	14	1.93
50917775--50917818	15	2.9	15	100	0	88	27	27	13	31	1.94
50918900--50918926	13	2.1	13	100	0	54	62	7	0	29	1.22
50924679--50924712	17	2.0	17	88	0	50	79	5	2	11	1.02
50925937--50925982	19	2.4	19	88	0	65	32	23	13	30	1.93
50925937--50925991	19	2.9	19	83	0	56	30	23	14	30	1.94
50926195--50926267	36	2.0	36	100	0	146	36	32	0	30	1.58
50932302--50932419	43	2.8	41	68	10	103	33	24	15	26	1.95
50932574--50932626	23	2.4	22	81	9	63	54	7	1	35	1.40
50939814--50939874	21	2.8	21	78	12	61	40	1	1	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50939829--50939888	21	3.0	21	80	9	54	40	3	1	55	1.27
50939960--50940045	45	1.9	45	82	0	109	41	8	3	46	1.50
50945214--50945238	13	1.9	13	100	0	50	0	24	40	36	1.55
50965446--50965558	51	2.2	51	100	0	226	38	20	7	33	1.82
50967624--50967754	21	6.2	21	72	7	86	19	33	21	25	1.97
50967639--50967776	63	2.2	63	98	0	267	18	34	20	27	1.95
50967640--50967757	21	5.7	20	76	11	112	16	34	22	26	1.95
50967640--50967777	21	6.6	21	76	15	90	17	34	21	27	1.95
50968622--50968669	24	2.0	24	91	0	78	35	8	16	39	1.79
50970066--50970113	21	2.3	21	85	0	60	68	0	2	29	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222