genome.fa.s15.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  164  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52429088--52429346	106	2.4	106	85	1	340	26	23	14	35	1.93
52431689--52431738	15	3.4	15	70	25	52	24	22	6	48	1.73
52431683--52431738	29	1.9	29	100	0	112	21	25	5	48	1.71
52437444--52437504	30	2.0	30	100	0	122	32	22	3	40	1.70
52439227--52439503	33	8.3	33	68	7	137	25	23	18	32	1.97
52439226--52439507	101	2.8	101	94	0	492	26	23	17	32	1.97
52441029--52441053	13	1.9	13	100	0	50	24	24	4	48	1.68
52442407--52442449	21	2.0	21	82	8	52	44	18	6	30	1.76
52443163--52443292	45	2.9	44	82	6	129	26	19	15	38	1.91
52443185--52443337	45	3.4	44	79	8	141	27	18	13	41	1.87
52467266--52467305	21	1.9	21	85	10	55	70	7	20	2	1.24
52471841--52471881	21	1.9	22	85	14	59	58	2	2	36	1.24
52477212--52477246	18	1.9	18	88	0	52	28	22	14	34	1.93
52482183--52482214	11	2.9	11	90	0	55	18	43	6	31	1.75
52496461--52496620	54	3.0	54	89	5	254	53	12	11	23	1.70
52497994--52498079	35	2.4	36	94	3	156	30	24	13	31	1.94
52497994--52498083	18	5.1	18	87	2	128	31	23	14	31	1.94
52503536--52503595	18	3.3	18	72	9	59	35	20	23	21	1.96
52512121--52512192	15	4.8	15	73	11	58	45	6	19	27	1.76
52512113--52512196	30	2.8	30	92	0	132	45	5	21	27	1.75
52518419--52518487	35	2.0	35	88	0	102	39	20	15	24	1.92
52521195--52521225	16	1.9	16	93	0	53	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52536776--52536816	21	1.9	22	85	14	59	58	2	2	36	1.24
52542131--52542165	18	1.9	18	88	0	52	28	22	14	34	1.93
52547084--52547115	11	2.9	11	90	0	55	18	43	6	31	1.75
52552137--52552221	33	2.5	33	80	3	98	11	9	40	38	1.74
52555692--52555731	22	1.9	22	85	10	57	40	5	7	47	1.54
52556800--52556898	39	2.5	39	78	0	108	27	8	22	42	1.81
52564126--52564276	28	5.4	28	91	1	214	33	27	11	26	1.92
52564726--52564752	12	2.2	12	100	0	54	40	0	7	51	1.30
52572473--52572623	28	5.4	28	92	1	223	33	28	11	25	1.92
52573073--52573099	12	2.2	12	100	0	54	40	0	7	51	1.30
52574704--52574831	36	3.5	36	76	9	107	38	31	14	16	1.88
52578324--52578400	28	2.8	28	91	0	127	25	25	24	23	2.00
52578771--52579074	27	11.3	27	83	2	344	16	18	20	44	1.87
52581948--52582338	195	2.0	195	98	0	764	38	16	12	32	1.86
52583409--52583468	27	2.3	25	76	18	59	33	6	0	60	1.23
52583781--52583806	13	2.0	13	100	0	52	61	0	0	38	0.96
52588812--52588836	5	5.0	5	100	0	50	60	0	0	40	0.97
52590780--52590925	33	4.4	33	70	6	105	33	17	20	28	1.96
52590709--52591046	101	3.5	99	81	7	370	33	16	22	27	1.95
52590864--52591050	90	2.1	90	90	2	295	32	17	23	26	1.96
52593967--52594009	12	3.5	12	87	3	59	16	23	0	60	1.35
52597211--52597263	19	2.7	20	82	5	63	24	7	0	67	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52610860--52611011	41	3.7	41	89	0	223	33	18	25	23	1.97
52610860--52611048	41	4.6	41	81	9	206	31	17	24	26	1.97
52610860--52611048	82	2.3	82	84	4	229	31	17	24	26	1.97
52610853--52611137	41	6.9	40	73	11	166	29	17	24	29	1.97
52620226--52620337	46	2.4	48	77	19	146	26	5	21	46	1.73
52620316--52620350	18	1.9	18	94	0	61	22	5	20	51	1.68
52623409--52623441	16	2.1	16	94	0	57	45	6	21	27	1.75
52623475--52623527	25	2.1	25	82	6	63	37	1	1	58	1.20
52629585--52629663	37	2.1	37	88	4	115	25	30	18	25	1.98
52629782--52630328	47	11.4	47	91	4	842	29	29	8	32	1.87
52629990--52630298	103	3.1	103	93	3	515	30	29	7	32	1.85
52630037--52630328	150	1.9	151	97	1	550	30	29	8	32	1.86
52643134--52643196	31	2.0	31	100	0	126	38	19	9	33	1.84
52655004--52655037	16	2.1	16	89	10	52	0	17	0	82	0.67
52655375--52655424	13	3.6	14	78	10	50	56	0	2	42	1.11
52658937--52658997	30	2.0	30	96	0	113	42	4	22	29	1.75
52664851--52664907	27	2.1	27	86	0	78	38	1	17	42	1.60
52664721--52665087	184	2.0	184	97	0	698	32	9	22	35	1.86
52665032--52665181	27	5.6	27	84	4	169	36	2	25	36	1.68
52669210--52669361	45	3.4	45	82	3	164	24	19	16	39	1.92
52670931--52671040	42	2.6	42	76	12	118	25	19	26	29	1.98
52675431--52675513	43	1.9	44	85	7	116	26	22	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52679134--52679212	3	26.3	3	84	5	97	5	30	1	63	1.24
52685917--52685952	15	2.5	14	86	8	54	44	8	0	47	1.33
52687938--52687972	18	1.9	18	88	0	52	31	14	11	42	1.81
52688063--52688284	55	3.9	55	74	11	194	51	12	9	26	1.69
52704832--52704871	19	2.1	19	95	0	71	42	12	5	40	1.64
52706348--52706388	20	2.0	20	90	0	64	21	17	7	53	1.67
52711135--52711167	17	1.9	17	88	11	50	30	21	0	48	1.50
52711357--52711457	51	2.0	51	100	0	202	35	22	0	41	1.54
52712509--52712601	39	2.4	39	90	0	141	44	21	5	29	1.74
52712535--52712601	22	3.3	21	66	28	54	47	22	2	26	1.65
52714820--52714894	33	2.2	34	81	9	91	5	22	0	72	1.05
52717914--52717967	21	2.8	19	81	10	65	72	1	22	3	1.10
52717914--52717974	21	3.1	20	72	9	54	72	1	19	6	1.16
52720224--52720337	32	3.6	30	77	12	97	33	4	16	45	1.67
52720421--52720472	22	2.3	22	87	9	70	28	7	17	46	1.75
52721563--52721671	51	2.1	51	82	0	137	30	10	15	44	1.79
52721584--52721662	17	4.6	17	70	6	61	27	11	16	44	1.82
52723129--52723332	101	2.0	101	91	1	329	31	14	14	39	1.86
52723607--52723898	90	3.2	89	78	9	261	20	19	18	41	1.91
52723917--52724002	30	2.9	30	89	0	127	15	18	25	40	1.89
52724074--52724144	29	2.4	30	77	17	76	18	16	18	46	1.84
52724089--52724151	29	2.1	30	85	8	85	17	20	20	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52724410--52724553	78	1.8	78	83	2	191	21	11	20	46	1.81
52724446--52724617	79	2.2	77	83	5	202	23	14	18	43	1.87
52727555--52727619	32	2.0	32	96	0	121	36	9	32	21	1.85
52727931--52727973	17	2.4	17	84	11	50	67	0	2	30	1.03
52728377--52728411	16	2.3	15	95	5	61	42	5	25	25	1.77
52736246--52736288	10	4.4	9	82	8	50	74	2	0	23	0.93
52736104--52737562	725	2.0	729	94	1	2554	40	12	15	30	1.85
52746290--52746362	30	2.5	29	91	4	112	26	23	28	21	1.99
52746479--52746534	26	2.2	25	87	3	76	39	17	21	21	1.93
52746742--52746829	27	3.3	27	88	3	88	18	18	26	37	1.93
52746753--52746969	27	8.2	27	85	6	250	17	17	22	42	1.89
52753236--52753509	47	5.7	47	92	0	422	32	8	30	29	1.86
52755730--52756050	40	8.1	40	88	1	439	24	21	27	25	1.99
52759455--52759916	47	9.7	47	93	2	739	32	8	29	29	1.86
52762550--52762600	16	3.2	16	85	0	57	27	23	5	43	1.77
52763953--52763989	3	12.0	3	94	5	65	64	0	2	32	1.07
52764115--52764148	14	2.5	14	90	4	52	41	2	0	55	1.15
52765530--52765570	14	2.8	15	85	10	50	53	2	0	43	1.13
52768994--52769034	14	3.0	14	83	16	59	29	0	0	70	0.87
52798859--52798920	26	2.4	25	79	12	63	70	8	9	11	1.33
52799327--52799370	11	4.2	10	82	8	52	27	2	9	61	1.38
52805626--52805678	21	2.5	21	81	6	63	28	15	20	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52813092--52813124	15	2.2	15	94	0	57	39	33	6	21	1.78
52824243--52824271	5	5.8	5	100	0	58	17	0	0	82	0.66
52836871--52836938	16	4.2	16	96	0	127	26	0	35	38	1.57
52837154--52837195	15	2.7	16	82	14	52	52	2	0	45	1.13
52837163--52837204	15	2.9	15	82	10	52	52	0	0	47	1.00
52837370--52837430	28	2.2	28	85	5	81	50	3	0	45	1.17
52845123--52845193	25	2.7	27	80	8	76	33	21	23	21	1.97
52845338--52845403	26	2.6	26	88	4	100	37	22	22	16	1.93
52847748--52847854	30	3.6	30	87	0	115	34	22	20	22	1.97
52847964--52848091	26	4.9	26	79	3	114	40	21	21	17	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222