genome.fa.s15.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  196  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62619383--62619986	99	6.1	99	84	3	739	24	22	22	29	1.99
62619383--62619986	199	3.0	197	86	1	798	24	22	22	29	1.99
62620019--62620126	45	2.4	45	92	0	180	35	23	17	24	1.95
62620185--62620381	40	4.8	40	72	13	155	26	22	21	29	1.99
62620157--62620428	127	2.1	127	92	1	447	26	20	21	31	1.98
62620533--62620847	40	7.5	40	69	12	202	24	20	24	29	1.99
62620246--62620640	212	1.9	212	89	1	612	26	20	22	31	1.98
62620228--62620888	43	15.6	43	66	14	149	24	21	22	31	1.98
62620575--62620873	44	7.1	41	63	21	111	23	21	24	30	1.99
62620458--62620894	127	3.4	127	94	0	748	24	20	23	31	1.98
62620902--62621565	45	14.8	45	88	4	826	30	23	17	28	1.97
62622587--62622635	17	2.8	17	87	3	62	4	12	2	81	0.91
62622752--62622779	12	2.3	12	100	0	56	25	17	14	42	1.87
62628729--62628782	19	2.8	19	94	0	99	37	16	9	37	1.81
62628706--62628782	38	1.9	40	87	10	113	38	16	7	36	1.78
62632283--62632357	28	2.7	28	87	4	107	42	10	1	45	1.47
62632343--62632380	17	2.2	18	90	4	60	71	15	0	13	1.16
62632431--62632497	27	2.5	27	92	0	107	26	29	28	14	1.96
62632539--62632663	4	30.5	4	74	18	89	66	0	33	0	0.92
62632533--62632663	26	5.8	22	76	18	119	65	0	34	0	0.93
62632534--62632649	26	4.7	26	78	13	127	66	0	33	0	0.92
62632592--62632684	33	3.0	29	71	20	89	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62632543--62632710	63	2.7	65	82	12	192	64	0	35	0	0.94
62632539--62632663	48	2.6	47	76	16	141	66	0	33	0	0.92
62632597--62632727	21	6.3	20	75	17	115	66	0	33	0	0.92
62632588--62632727	63	2.2	62	81	10	153	66	0	33	0	0.92
62639287--62639327	3	13.7	3	94	0	73	65	31	2	0	1.05
62639577--62639652	27	2.8	27	85	0	107	15	28	28	26	1.96
62639723--62639795	28	2.6	28	86	2	101	47	1	10	39	1.47
62650269--62650303	18	2.0	17	88	5	52	54	0	0	45	0.99
62650249--62650423	63	2.9	57	67	14	136	48	5	1	45	1.32
62655595--62655646	15	3.2	15	75	19	59	44	0	0	55	0.99
62655598--62655652	17	3.2	16	72	27	51	45	0	0	54	0.99
62658238--62658387	37	3.9	37	86	11	187	26	21	14	37	1.92
62658310--62658578	46	5.6	46	87	6	331	28	22	13	35	1.92
62658353--62658572	52	4.3	52	85	8	299	27	22	13	36	1.92
62658310--62658578	98	2.8	94	80	12	321	28	22	13	35	1.92
62660588--62660737	68	2.2	68	84	4	187	23	23	20	33	1.97
62660841--62660951	35	3.0	39	67	22	101	22	27	24	25	2.00
62660814--62660951	73	1.9	73	89	0	213	22	27	25	24	2.00
62667311--62667362	16	3.2	16	91	0	77	28	0	34	36	1.58
62667343--62667437	45	2.1	44	84	1	118	35	5	25	33	1.78
62667599--62667633	18	2.0	17	88	5	52	54	0	0	45	0.99
62667557--62667629	27	2.7	27	76	8	76	52	2	0	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62667746--62667780	18	2.0	17	88	5	52	54	0	0	45	0.99
62667518--62667792	147	1.9	149	94	1	491	46	3	2	47	1.33
62667848--62667900	16	3.4	17	73	21	53	56	0	0	43	0.99
62667774--62667960	60	3.1	59	66	13	157	49	6	2	41	1.42
62667726--62668020	119	2.5	120	93	2	495	50	4	2	43	1.35
62671278--62671329	20	2.7	20	74	14	54	50	1	0	48	1.12
62671977--62672043	27	2.4	27	83	11	82	58	1	4	35	1.28
62671968--62672062	28	3.4	27	79	16	97	58	1	5	34	1.27
62672052--62672131	20	4.1	19	75	15	56	62	1	5	31	1.24
62672078--62672168	20	4.6	19	73	9	67	59	1	4	35	1.25
62672074--62672168	10	10.0	9	69	17	59	58	1	4	35	1.24
62672046--62672192	59	2.5	60	79	11	144	59	1	5	33	1.28
62672431--62672495	19	3.3	20	79	14	66	55	3	1	40	1.25
62672445--62672497	19	2.8	19	86	8	74	56	1	0	41	1.10
62674605--62674665	20	2.9	20	76	11	68	34	0	4	60	1.18
62675116--62675249	72	1.9	70	86	6	191	41	10	8	39	1.69
62682177--62682240	16	3.6	16	74	25	65	23	1	28	46	1.61
62681704--62682451	23	32.7	23	79	9	759	25	2	23	48	1.63
62682517--62682565	25	2.0	25	100	0	98	40	14	0	44	1.45
62682971--62683010	18	2.2	18	95	0	71	40	7	30	22	1.81
62683855--62683892	20	1.9	20	84	10	51	55	7	2	34	1.43
62684859--62684933	22	3.4	22	81	7	89	45	0	30	24	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62684899--62684932	11	3.0	11	95	4	59	47	0	35	17	1.48
62690540--62691238	104	6.7	105	85	7	882	32	14	14	38	1.87
62694567--62694626	20	3.2	19	77	9	61	40	3	3	53	1.34
62697651--62697694	11	3.8	11	82	11	61	38	0	0	61	0.96
62699583--62699877	101	3.0	100	84	7	333	33	14	23	29	1.94
62699698--62699877	90	2.0	90	90	4	283	32	15	22	30	1.94
62699716--62699901	90	2.1	90	81	4	214	34	13	23	28	1.93
62699871--62699936	25	2.7	25	84	11	75	50	3	24	22	1.63
62702282--62702370	20	4.3	22	66	18	64	44	17	20	16	1.86
62702254--62702333	42	1.9	41	82	7	99	45	20	20	15	1.86
62716273--62716320	21	2.3	21	85	0	60	47	0	2	50	1.12
62725498--62725644	73	2.0	73	95	0	267	26	21	21	31	1.98
62727100--62728106	44	22.7	44	76	9	782	28	16	25	29	1.96
62727096--62728091	133	7.5	133	90	2	1387	28	16	25	29	1.97
62731337--62731410	30	2.5	31	82	4	80	43	5	12	39	1.65
62734414--62734528	57	2.0	56	93	1	194	26	13	19	40	1.88
62743492--62743547	5	11.2	5	96	0	103	17	19	19	42	1.89
62772898--62772946	21	2.3	21	85	0	62	24	22	16	36	1.94
62772911--62773020	21	5.2	21	76	8	98	17	21	19	41	1.90
62773005--62773056	21	2.5	21	72	12	52	19	30	15	34	1.93
62789770--62789812	20	2.1	21	83	12	54	65	9	11	13	1.48
62790461--62790727	35	8.0	34	81	8	289	18	21	17	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62790456--62790717	67	3.9	65	85	7	287	18	22	17	41	1.90
62790456--62790727	66	4.0	67	85	6	295	18	21	17	42	1.89
62793519--62793563	20	2.1	22	84	12	58	13	11	8	66	1.44
62809442--62809491	23	2.1	24	85	3	66	26	4	12	58	1.51
62838760--62838895	14	9.4	14	66	12	53	54	2	5	37	1.37
62838843--62838893	14	3.5	15	80	17	54	56	0	3	39	1.18
62839041--62839095	3	18.0	3	84	3	74	63	1	3	30	1.22
62839803--62839847	18	2.6	17	79	6	54	82	6	2	8	0.93
62841563--62841599	16	2.3	16	85	0	56	67	0	8	24	1.17
62842172--62842236	22	3.1	21	75	12	53	43	15	4	36	1.67
62842396--62842428	16	2.1	16	100	0	66	45	18	6	30	1.73
62842565--62842591	13	2.1	13	100	0	54	33	7	14	44	1.73
62863645--62863707	32	2.0	32	93	0	108	22	11	26	39	1.87
62881504--62881536	16	2.1	16	100	0	66	27	12	6	54	1.60
62883154--62883195	20	2.0	21	86	4	59	52	2	16	28	1.56
62883608--62883632	13	1.9	13	100	0	50	56	16	0	28	1.41
62888672--62888825	42	3.7	42	86	2	184	18	20	18	42	1.89
62888769--62888841	21	3.5	21	76	0	83	17	19	17	45	1.86
62893185--62893341	41	3.7	43	80	10	153	26	28	19	26	1.99
62893185--62893341	84	1.8	84	82	10	203	26	28	19	26	1.99
62902519--62902657	46	3.0	46	87	2	190	35	8	25	30	1.86
62902845--62902873	13	2.1	14	93	6	51	27	0	13	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62919719--62919762	16	2.8	16	90	10	72	45	0	0	54	0.99
62921699--62921816	58	2.0	58	81	0	137	33	23	22	19	1.97
62921913--62922213	100	3.0	97	72	9	248	33	16	24	24	1.96
62921957--62922241	100	2.8	98	73	6	250	31	17	26	24	1.97
62921954--62922243	50	5.8	50	72	4	199	31	16	26	24	1.97
62922207--62922350	50	2.9	50	78	10	141	38	20	20	21	1.94
62923673--62923749	22	3.4	22	64	7	64	33	2	25	37	1.70
62923667--62923762	46	2.1	47	98	2	185	32	2	22	42	1.65
62931342--62931568	124	1.8	123	83	2	303	32	14	23	29	1.94
62934786--62935918	23	44.8	28	75	18	526	29	0	23	46	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222