genome.fa.s15.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  209  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66229915--66229948	17	2.0	17	88	0	50	55	2	11	29	1.50
66231923--66233032	132	8.4	131	90	3	1661	29	23	17	29	1.97
66231961--66232836	44	19.9	44	63	12	125	29	23	17	29	1.97
66232670--66232985	44	7.2	45	63	11	109	28	22	18	29	1.98
66233840--66233864	13	1.9	13	100	0	50	56	8	24	12	1.62
66239781--66239806	13	2.0	13	100	0	52	46	15	7	30	1.74
66246386--66246414	3	9.7	3	100	0	58	31	34	0	34	1.58
66247958--66247995	20	2.1	19	85	14	53	44	0	10	44	1.38
66257057--66257151	45	2.1	44	88	1	136	32	6	27	33	1.82
66257312--66257346	18	2.0	17	88	5	52	54	0	0	45	0.99
66257206--66257515	157	2.0	157	97	0	584	44	2	4	48	1.38
66257449--66257490	15	2.7	16	82	14	52	52	2	0	45	1.13
66257458--66257501	15	3.1	15	83	9	56	52	0	0	47	1.00
66257508--66257706	66	3.2	64	67	20	161	49	6	3	41	1.44
66257447--66257744	120	2.5	121	91	5	487	50	4	2	42	1.36
66257569--66257619	15	3.4	15	79	12	52	52	1	0	45	1.12
66257568--66257610	15	2.8	16	79	10	54	53	2	0	44	1.13
66257709--66257743	18	2.0	17	88	5	52	54	0	0	45	0.99
66257741--66257948	91	2.3	91	82	5	224	49	3	3	44	1.35
66257775--66257967	91	2.1	92	86	2	237	46	3	4	45	1.41
66257810--66257948	47	3.0	46	69	17	126	49	3	2	43	1.34
66269511--66269569	19	3.1	19	78	9	66	52	0	1	45	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66270659--66270705	23	2.0	23	95	0	85	23	8	25	42	1.82
66274503--66274557	25	2.2	26	90	3	85	58	0	0	41	0.98
66275254--66275278	10	2.5	10	100	0	50	20	0	0	80	0.72
66275275--66275300	11	2.4	11	100	0	52	38	0	0	61	0.96
66275264--66275325	32	1.9	32	87	9	90	41	0	0	58	0.98
66276644--66276684	21	1.9	22	85	5	57	24	7	2	65	1.30
66284910--66284945	17	2.0	19	89	10	58	33	0	0	66	0.92
66290868--66290910	19	2.3	18	88	8	59	34	0	2	62	1.08
66290868--66290903	19	1.9	18	94	5	63	36	0	0	63	0.94
66291854--66291960	27	4.0	26	71	16	85	40	0	3	56	1.17
66292924--66292988	29	2.2	31	83	10	82	46	0	3	50	1.17
66293946--66294071	60	2.1	60	100	0	252	37	16	10	35	1.83
66297110--66297179	33	2.1	33	100	0	140	22	17	15	44	1.86
66299411--66299509	51	1.9	51	91	0	162	35	11	33	20	1.88
66299471--66299638	60	2.8	60	84	3	203	35	15	27	21	1.94
66304489--66304549	26	2.2	26	82	11	68	52	0	3	44	1.17
66317261--66317299	20	2.0	20	89	0	60	56	28	0	15	1.40
66318632--66318673	5	8.0	5	89	10	66	38	0	40	21	1.53
66324441--66324474	17	2.0	17	94	0	59	44	50	0	5	1.26
66329080--66329113	17	2.0	17	94	0	59	44	50	0	5	1.26
66335455--66335503	23	2.1	23	84	0	62	46	10	2	40	1.49
66343523--66343579	30	1.9	30	96	0	105	45	12	14	28	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66354056--66354252	50	3.8	50	83	8	220	28	21	26	22	1.99
66355740--66355815	9	8.4	9	85	0	98	40	25	9	25	1.84
66355739--66355815	36	2.1	36	90	0	118	41	24	9	24	1.84
66362399--66362436	19	2.1	19	85	5	51	31	0	10	57	1.32
66364255--66364302	19	2.4	20	80	16	55	54	4	6	35	1.45
66371960--66372011	25	2.1	25	100	0	104	23	26	7	42	1.81
66372363--66372439	14	5.0	15	71	20	52	42	14	9	33	1.77
66372379--66372418	20	2.0	20	90	0	62	50	12	10	27	1.72
66372367--66372433	34	1.9	35	90	3	109	46	13	8	31	1.74
66374012--66374039	11	2.5	11	100	0	56	7	39	10	42	1.67
66377542--66377576	18	2.0	17	88	5	52	45	0	0	54	0.99
66377492--66377713	120	1.9	120	98	0	426	44	1	5	47	1.37
66377675--66377719	16	2.8	17	78	21	53	51	0	2	46	1.13
66377861--66377951	45	2.0	45	85	2	121	37	28	6	27	1.82
66377932--66378000	16	4.2	16	92	3	120	36	37	1	24	1.65
66377932--66378000	33	2.1	32	94	2	120	36	37	1	24	1.65
66381564--66381631	33	2.1	32	83	5	82	35	8	4	51	1.53
66381813--66381852	19	2.1	20	81	13	57	30	2	5	62	1.29
66386470--66386582	56	2.0	55	98	1	217	38	7	14	40	1.73
66387227--66387254	13	2.2	13	100	0	56	39	14	7	39	1.73
66390403--66390455	14	3.5	15	76	7	54	26	1	1	69	1.09
66390403--66390468	29	2.3	28	82	10	80	27	3	1	68	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66392311--66392358	23	2.1	23	85	14	64	27	2	4	66	1.21
66399989--66400045	21	3.0	21	65	21	52	40	3	1	54	1.28
66400089--66400126	18	2.1	18	90	0	58	26	7	23	42	1.81
66411037--66411105	34	2.0	34	100	0	138	40	17	11	30	1.85
66414373--66414398	3	8.7	3	100	0	52	69	0	0	30	0.89
66414781--66414859	30	2.7	27	77	12	77	63	2	7	26	1.34
66416827--66416944	61	2.0	60	87	1	173	38	14	11	35	1.81
66416929--66417205	86	3.2	84	71	13	213	37	14	12	35	1.84
66426950--66427003	27	2.0	27	100	0	108	33	22	29	14	1.94
66431895--66431970	13	5.2	13	71	20	53	38	9	3	48	1.54
66431882--66431992	45	2.5	45	95	0	195	37	8	6	47	1.59
66436497--66436578	33	2.5	35	77	18	86	43	2	2	51	1.28
66436777--66436827	13	3.9	13	81	0	66	37	27	5	29	1.80
66439055--66439117	31	2.0	31	87	6	92	44	7	12	34	1.72
66456197--66456337	9	15.1	9	67	11	70	62	5	4	27	1.37
66456327--66456383	26	2.3	26	82	8	75	64	0	1	33	1.04
66456327--66456390	25	2.6	23	77	18	67	62	0	3	34	1.11
66456750--66456840	9	10.1	9	74	11	71	28	1	3	67	1.14
66456731--66456826	28	3.5	27	78	13	90	26	1	4	68	1.14
66456730--66456839	9	11.9	9	70	21	52	26	0	4	68	1.15
66459258--66459370	30	3.8	30	86	2	131	27	47	4	20	1.69
66459258--66459370	60	1.9	60	83	7	149	27	47	4	20	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66459869--66459996	23	5.5	23	67	19	70	35	4	3	57	1.36
66459944--66460085	25	5.5	26	72	12	71	33	6	4	55	1.44
66460240--66460287	16	3.1	15	90	6	69	31	2	2	64	1.16
66460240--66460291	8	6.5	8	82	8	61	30	1	1	65	1.14
66461888--66461919	11	2.8	12	95	4	57	25	0	0	75	0.81
66462098--66462133	11	3.3	11	88	0	54	61	8	8	22	1.51
66462539--66462698	41	3.9	41	85	0	205	41	19	23	15	1.89
66463557--66463615	28	2.1	28	96	0	109	42	6	11	38	1.68
66464755--66464781	8	3.4	8	100	0	54	59	25	0	14	1.36
66465618--66465678	21	3.1	20	71	15	56	8	14	3	73	1.19
66465612--66465690	16	4.6	16	73	18	61	8	12	3	74	1.18
66465541--66465726	94	2.0	95	95	3	340	11	12	5	70	1.33
66467339--66467735	109	3.6	109	90	0	587	31	15	18	34	1.92
66467783--66467839	21	2.7	21	83	0	78	49	15	21	14	1.80
66469432--66469689	43	6.0	43	83	4	333	21	17	31	30	1.96
66483010--66483044	10	3.2	11	88	12	54	17	37	0	45	1.48
66483027--66483082	22	2.5	22	91	2	94	28	30	0	41	1.57
66483055--66483166	51	2.2	51	95	0	197	29	25	0	45	1.54
66484305--66484329	7	3.6	7	100	0	50	28	0	12	60	1.32
66484981--66485015	18	1.9	18	100	0	70	22	31	11	34	1.90
66485437--66485522	43	2.0	45	86	4	122	36	0	12	51	1.40
66485528--66486249	23	30.3	23	74	19	585	45	24	1	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66485631--66485716	21	3.2	28	68	30	71	43	27	1	27	1.63
66485590--66486180	45	12.6	44	79	14	523	45	24	1	29	1.62
66485761--66486276	119	4.3	118	84	11	669	45	23	1	29	1.61
66485913--66486180	73	3.7	74	85	10	369	44	25	1	29	1.63
66486173--66486281	50	2.1	52	86	5	159	44	25	1	27	1.64
66486237--66486303	22	3.1	22	82	6	84	43	22	1	32	1.62
66486308--66486525	116	1.9	116	94	0	382	38	9	8	43	1.68
66486501--66486542	17	2.4	18	80	4	50	42	9	2	45	1.49
66489557--66489907	125	2.8	125	85	6	507	31	22	15	30	1.95
66494081--66494112	12	2.6	13	85	14	50	37	0	6	56	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222