genome.fa.s15.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  183  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58530081--58530202	42	2.9	42	91	0	190	29	24	20	25	1.99
58530613--58530691	12	7.1	12	71	16	71	3	40	17	37	1.68
58530607--58530691	33	2.6	33	92	0	143	4	41	16	37	1.69
58530655--58530723	21	3.3	21	95	0	120	2	44	18	33	1.65
58532403--58532483	20	4.2	20	74	15	89	39	4	4	50	1.46
58534076--58534158	27	3.1	27	63	13	73	33	18	4	43	1.71
58534068--58534173	52	2.0	52	100	0	212	32	18	5	43	1.74
58534082--58534164	25	3.2	26	63	13	71	32	21	4	40	1.74
58535468--58535492	11	2.3	11	100	0	50	48	0	0	52	1.00
58535989--58536041	21	2.5	21	75	3	52	47	20	0	32	1.51
58536002--58536077	35	2.2	35	87	0	107	48	25	0	26	1.51
58536085--58536172	21	4.3	21	75	16	60	36	39	2	21	1.66
58536095--58536172	38	2.0	39	92	2	131	37	39	2	20	1.66
58536138--58536193	21	2.6	22	82	5	69	42	37	1	17	1.60
58536390--58536730	114	3.0	113	89	3	472	28	27	19	24	1.98
58536631--58536843	72	2.9	74	84	5	288	26	23	21	28	1.99
58536632--58536871	74	3.3	74	82	6	301	27	23	22	27	1.99
58536511--58537265	186	4.1	185	74	8	668	27	24	21	26	1.99
58536770--58537102	113	2.9	112	83	6	456	27	25	22	24	2.00
58536408--58537142	374	2.0	373	88	1	1098	27	24	21	26	1.99
58537012--58537175	72	2.3	72	84	5	197	28	25	20	26	1.99
58556138--58556281	17	8.4	17	77	8	130	47	10	11	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58556049--58556177	35	3.4	37	73	17	122	41	12	9	36	1.75
58556138--58556300	35	4.7	35	79	6	170	47	10	12	30	1.74
58556479--58556525	20	2.5	19	77	16	53	44	8	17	29	1.78
58556898--58556948	7	7.0	7	93	6	84	0	17	0	82	0.67
58556890--58556952	22	2.8	22	92	4	99	0	19	0	80	0.70
58556889--58556964	22	3.3	22	74	15	73	0	19	0	80	0.72
58556898--58556948	15	3.5	14	92	7	84	0	17	0	82	0.67
58557238--58557296	3	18.0	3	86	13	73	0	33	0	66	0.92
58557228--58557295	16	4.1	16	87	7	91	0	29	0	70	0.87
58557228--58557292	34	1.9	33	87	3	94	0	29	0	70	0.87
58557650--58557766	30	3.9	30	83	3	139	43	3	23	29	1.70
58557650--58557766	60	2.0	59	84	5	155	43	3	23	29	1.70
58558484--58558524	21	2.0	21	85	0	55	65	2	0	31	1.05
58562973--58563058	43	2.0	43	88	4	129	37	9	4	48	1.56
58563321--58563354	16	2.1	16	88	0	50	17	14	8	58	1.61
58569654--58569715	30	2.1	30	96	0	115	30	9	30	29	1.89
58573983--58574070	44	2.0	44	86	0	122	46	4	7	40	1.53
58575086--58575147	20	3.2	20	72	22	60	66	1	4	27	1.21
58575087--58575171	39	2.2	40	81	8	95	63	1	9	25	1.32
58575371--58575471	19	5.4	19	76	15	63	26	2	3	66	1.24
58575439--58575479	17	2.3	19	83	8	50	19	2	2	75	1.03
58575439--58575480	18	2.3	19	84	12	52	19	2	2	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58576996--58577031	8	4.6	8	86	6	56	50	0	0	50	1.00
58577001--58577029	15	1.9	15	100	0	58	58	0	0	41	0.98
58577695--58577828	66	2.0	65	82	5	162	12	27	19	40	1.88
58584063--58584131	31	2.1	35	84	10	92	49	8	17	24	1.75
58594434--58594473	19	2.1	19	85	0	53	65	2	0	32	1.06
58594741--58594811	19	3.8	19	74	17	69	53	1	2	42	1.24
58595087--58595180	29	3.2	29	66	8	73	30	11	17	40	1.85
58595049--58595180	59	2.2	60	89	5	198	29	12	17	40	1.86
58603016--58603042	13	2.1	13	100	0	54	14	14	40	29	1.86
58612583--58612609	14	1.9	14	100	0	54	29	0	7	62	1.22
58613070--58613108	16	2.4	16	95	0	69	38	7	25	28	1.83
58613090--58613182	44	2.1	44	90	6	143	32	4	26	36	1.76
58613090--58613194	44	2.5	41	77	18	110	32	3	26	37	1.75
58613338--58613373	18	2.0	18	94	0	63	66	2	0	30	1.06
58620419--58620471	27	2.0	27	85	7	72	16	20	18	43	1.88
58622433--58622480	17	2.8	17	96	0	87	27	29	2	41	1.67
58628790--58628818	4	7.2	4	100	0	58	51	0	0	48	1.00
58629374--58629424	26	1.9	27	84	11	70	58	0	3	37	1.16
58630528--58630667	54	2.6	54	83	4	156	29	19	14	37	1.91
58636825--58636884	25	2.4	25	78	13	68	51	0	1	46	1.10
58639258--58639307	24	2.1	24	96	0	91	32	20	24	24	1.98
58639264--58639317	24	2.2	24	86	0	72	38	20	25	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58639276--58639413	24	5.7	24	76	7	100	32	21	27	18	1.97
58641722--58641753	9	3.4	9	91	8	55	62	9	12	15	1.54
58641720--58641750	10	3.2	10	90	9	55	61	9	9	19	1.54
58645236--58645431	32	6.2	32	84	0	214	37	18	20	23	1.94
58645249--58645439	64	3.0	64	84	0	247	36	18	20	24	1.95
58645610--58645692	24	3.5	24	81	0	85	46	24	4	24	1.71
58645713--58645873	81	2.0	81	86	4	227	23	27	19	29	1.98
58645713--58645874	27	6.0	27	82	8	188	23	27	19	29	1.98
58645712--58645873	54	3.0	53	86	3	218	24	27	19	29	1.98
58650830--58650859	15	2.0	15	100	0	60	20	26	20	33	1.97
58658185--58658317	54	2.5	54	84	9	157	39	21	16	22	1.92
58658178--58658286	27	4.0	27	83	4	139	42	21	16	20	1.89
58658185--58658321	27	5.1	28	76	11	94	39	20	16	24	1.92
58658685--58658761	28	2.8	28	88	4	111	27	23	22	27	1.99
58661258--58661316	18	3.3	17	77	13	57	0	61	0	38	0.96
58661267--58661316	6	8.2	6	93	2	82	0	62	0	38	0.96
58661353--58661397	25	1.9	23	82	13	56	6	33	0	60	1.23
58665013--58665060	19	2.4	21	79	6	55	60	2	4	33	1.27
58665047--58665098	20	2.8	18	80	11	59	51	0	3	44	1.19
58665053--58665101	20	2.5	20	86	0	71	51	0	4	44	1.20
58665603--58665657	21	2.6	21	85	0	74	29	34	9	27	1.87
58667638--58667699	2	31.0	2	96	0	115	48	50	1	0	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58672536--58672752	36	5.2	45	75	20	245	35	13	21	29	1.92
58672536--58672752	82	2.7	82	95	2	384	35	13	21	29	1.92
58674297--58674452	42	3.7	42	85	5	188	41	17	22	17	1.90
58676826--58676868	3	14.7	3	90	4	70	62	0	2	34	1.08
58678051--58678087	9	4.1	9	89	0	56	48	10	10	29	1.72
58680859--58681156	50	5.8	50	84	2	317	24	28	18	27	1.98
58682819--58683461	43	14.9	43	81	1	651	40	22	16	20	1.91
58682819--58683488	130	5.2	128	85	3	691	40	21	16	21	1.91
58682819--58683488	87	7.8	86	81	3	625	40	21	16	21	1.91
58684389--58684416	13	2.2	13	100	0	56	67	7	7	17	1.37
58685778--58685820	12	3.7	12	79	14	54	65	0	0	34	0.93
58694464--58694539	33	2.3	33	81	0	98	46	17	18	18	1.85
58694544--58694613	28	2.5	28	77	9	79	37	17	22	22	1.94
58709580--58709627	22	2.2	22	84	0	60	37	20	16	25	1.93
58721231--58721264	12	2.8	12	87	12	52	17	0	26	55	1.42
58725588--58725650	24	2.6	25	77	7	67	36	19	25	19	1.94
58729614--58729798	46	4.0	46	93	1	300	29	24	9	36	1.86
58731025--58731057	17	1.9	17	100	0	66	57	18	0	24	1.40
58739836--58739974	25	5.6	25	84	0	161	24	14	25	35	1.93
58739844--58739974	50	2.6	50	88	0	190	24	13	26	35	1.93
58748332--58748443	42	2.6	42	94	1	188	35	17	7	39	1.78
58750065--58750102	16	2.3	16	90	4	58	15	2	26	55	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58750107--58750141	6	5.7	6	89	3	52	20	0	14	65	1.26
58752322--58752495	77	2.3	77	85	0	240	20	6	21	50	1.71
58753182--58753272	21	4.3	21	83	5	96	38	35	15	10	1.83
58754051--58754253	36	5.2	36	64	19	113	48	22	9	19	1.77
58754103--58754133	16	1.9	16	93	0	53	41	29	9	19	1.83
58754008--58754254	79	3.1	79	93	0	422	46	22	10	20	1.81
58755821--58755909	25	3.6	25	70	16	62	31	23	25	19	1.98
58755844--58755932	25	3.7	23	74	6	61	32	22	28	16	1.96
58755891--58755944	25	2.2	25	86	6	74	31	18	31	18	1.95
58755901--58755960	26	2.4	25	80	8	68	35	18	26	20	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222