genome.fa.s15.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  51  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15145390--15145425	18	2.0	18	100	0	72	22	27	16	33	1.95
15147861--15147930	6	10.5	6	73	19	50	77	5	1	15	1.03
15157260--15157338	37	2.1	37	90	0	122	25	29	18	26	1.98
15157379--15157768	49	8.1	49	92	2	630	28	30	9	31	1.88
15157379--15157768	96	4.0	96	92	2	613	28	30	9	31	1.88
15162881--15162948	28	2.4	28	90	0	100	10	16	4	69	1.33
15172376--15172410	17	2.1	17	89	5	54	54	0	5	40	1.24
15175287--15175322	17	2.1	17	100	0	72	36	22	11	30	1.89
15182063--15182100	19	2.0	20	89	5	60	44	2	21	31	1.66
15183022--15183090	16	4.2	16	96	3	129	24	0	37	37	1.56
15183022--15183090	33	2.1	32	97	2	129	24	0	37	37	1.56
15183071--15183161	45	2.0	45	85	2	121	27	6	28	37	1.82
15183326--15183362	19	2.0	19	85	15	51	54	0	0	45	1.00
15183356--15183543	61	3.1	58	68	19	143	48	5	2	43	1.41
15183404--15183589	59	3.1	58	70	19	166	51	3	2	43	1.32
15183306--15183595	120	2.4	120	88	3	447	49	4	2	44	1.34
15195899--15195927	14	2.0	15	93	6	51	62	6	17	13	1.52
15226719--15226844	38	3.3	38	82	7	148	33	19	15	32	1.92
15226688--15226844	76	2.1	76	83	8	194	33	18	15	32	1.92
15228404--15228664	45	5.8	45	85	0	351	24	21	17	36	1.95
15228401--15228795	135	2.7	141	81	8	417	26	21	16	35	1.94
15228667--15228809	50	3.0	49	79	14	179	28	19	14	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15228563--15228772	110	2.0	105	85	6	287	25	21	16	36	1.94
15228517--15228795	155	1.8	150	88	3	423	26	21	16	35	1.95
15228667--15228815	45	3.2	45	83	8	174	28	19	14	37	1.91
15228472--15228860	200	2.0	195	81	4	449	26	20	15	37	1.93
15229442--15229478	16	2.2	17	81	18	51	29	18	2	48	1.62
15232035--15232211	27	6.6	27	81	8	184	46	18	16	18	1.85
15232031--15232230	80	2.5	80	81	9	223	45	17	18	19	1.86
15232044--15232211	53	3.2	53	83	4	221	45	18	17	18	1.85
15232044--15232239	53	3.7	52	80	7	196	44	18	16	19	1.87
15232031--15232241	27	8.0	26	80	5	165	44	18	17	19	1.88
15232035--15232254	80	2.7	80	78	10	202	45	17	16	19	1.85
15242642--15242744	51	2.0	51	98	0	197	36	8	17	36	1.81
15249077--15249117	20	2.0	20	86	9	57	73	2	0	24	0.96
15249430--15249469	21	2.0	20	85	14	55	62	2	5	30	1.29
15250007--15250042	18	2.0	18	88	0	54	22	5	2	69	1.22
15250401--15250437	18	2.1	18	94	0	65	62	0	0	37	0.96
15250782--15250818	18	2.0	20	84	10	51	35	5	0	59	1.20
15251237--15251346	34	3.2	34	85	1	148	38	0	18	43	1.50
15251237--15251362	34	3.7	33	83	7	144	38	0	15	46	1.47
15251447--15251969	126	4.2	125	90	1	762	37	17	16	28	1.91
15251447--15251969	251	2.1	251	87	2	773	37	17	16	28	1.91
15254300--15254332	13	2.5	13	100	0	66	21	9	27	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15256346--15256516	72	2.4	72	86	4	240	54	14	5	25	1.62
15256941--15256988	18	2.7	18	90	0	78	41	10	12	35	1.77
15268081--15268268	51	3.7	50	83	6	236	29	15	25	29	1.96
15271488--15271517	11	2.6	11	94	5	51	60	0	3	36	1.14
15271458--15271524	29	2.2	32	86	7	95	70	0	1	28	0.96
15272173--15272283	58	1.9	59	82	10	140	57	4	3	34	1.36
15302965--15303016	22	2.5	20	80	17	61	51	0	1	46	1.12
15309512--15309595	25	3.4	25	83	0	87	23	25	20	30	1.98
15309512--15309610	25	4.0	25	78	5	85	24	23	21	31	1.98
15315009--15315053	24	2.0	24	86	8	67	20	31	2	46	1.62
15316183--15316247	24	2.7	24	82	0	85	29	29	23	18	1.98
15320129--15320198	28	2.4	30	88	4	108	45	12	27	14	1.81
15320136--15320276	70	2.0	69	83	6	178	41	13	26	18	1.87
15320257--15320323	30	2.2	30	86	0	98	34	11	26	26	1.91
15334805--15334928	29	4.2	29	81	4	115	22	27	14	35	1.93
15334807--15334915	29	3.7	29	84	7	130	22	28	12	35	1.91
15340083--15340417	51	6.6	51	80	5	349	29	25	15	28	1.96
15340074--15340417	102	3.4	102	86	2	453	29	25	15	28	1.96
15343440--15343520	41	2.0	42	82	7	103	32	24	13	29	1.94
15350675--15350726	24	2.2	24	85	0	68	51	9	3	34	1.53
15364513--15364855	50	6.9	50	85	1	413	21	29	21	27	1.99
15365360--15365387	8	3.5	8	100	0	56	21	25	0	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15372892--15372925	18	1.9	17	88	5	50	23	11	11	52	1.70
15375210--15375240	15	2.1	15	93	0	53	32	9	6	51	1.60
15377275--15377310	14	2.5	15	90	4	56	19	5	11	63	1.46
15377413--15377455	18	2.3	19	92	4	70	25	2	2	69	1.12
15381593--15381660	32	2.1	32	100	0	136	33	19	8	38	1.82
15394745--15394784	21	1.9	21	89	0	62	15	27	2	55	1.53
15401802--15402399	27	22.1	27	83	1	678	42	21	17	17	1.88
15405220--15405256	19	1.9	19	89	10	58	35	24	0	40	1.55
15406548--15406577	12	2.5	12	94	0	51	43	0	36	20	1.52
15424215--15424247	16	2.0	17	88	5	50	27	3	18	51	1.60
15446665--15446728	31	2.1	31	87	0	92	18	18	7	54	1.67
15458266--15458311	20	2.3	21	88	7	69	47	19	10	21	1.80
15467444--15467491	23	2.1	23	96	0	87	41	8	4	45	1.53
15470106--15470140	18	2.0	17	94	5	61	40	0	20	40	1.52
15477072--15477212	37	3.8	37	76	11	153	38	15	17	29	1.90
15477062--15477224	75	2.2	75	95	0	299	41	14	15	28	1.86
15478138--15478179	14	2.7	15	85	10	50	64	2	30	2	1.19
15480013--15480076	20	3.2	20	81	0	65	15	28	25	31	1.96
15481939--15481973	14	2.5	14	90	0	61	22	22	22	31	1.98
15483042--15483073	12	2.7	12	95	0	55	37	0	12	50	1.41
15483023--15483060	19	2.0	19	85	10	51	34	2	18	44	1.64
15485582--15485608	14	1.9	14	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15485599--15485679	18	4.4	18	68	26	53	67	1	0	30	0.98
15486281--15486349	10	6.5	10	76	12	66	40	1	1	56	1.17
15486286--15486351	22	3.0	22	82	6	80	42	1	1	54	1.18
15486313--15486362	22	2.3	22	80	16	59	48	0	0	52	1.00
15488978--15489068	44	2.1	44	89	0	137	47	12	9	30	1.73
15489468--15489506	20	2.0	21	85	10	55	43	10	12	33	1.77
15496298--15496336	19	2.1	19	85	4	53	41	12	7	38	1.72
15500167--15500257	44	2.1	44	87	0	128	43	10	10	34	1.75
15517690--15517886	98	2.0	98	94	0	349	37	25	10	26	1.88
15519186--15519298	19	5.8	19	85	4	163	34	15	10	38	1.83
15519186--15519297	40	2.8	40	93	2	183	34	15	10	39	1.82
15528337--15528375	17	2.4	16	86	4	51	5	28	5	61	1.39
15532553--15532671	39	3.1	38	85	1	139	21	24	31	23	1.98
15536058--15536247	45	4.2	45	87	2	274	35	16	20	26	1.94
15543242--15543280	19	2.1	19	100	0	78	25	33	10	30	1.89
15546086--15546369	41	6.9	41	86	1	345	20	19	28	31	1.97
15546086--15546369	83	3.5	81	84	4	354	20	19	28	31	1.97
15546728--15546783	14	4.1	14	76	19	55	23	0	35	41	1.55
15546712--15546800	21	4.2	21	72	13	67	23	0	37	39	1.55
15547224--15547276	21	2.5	22	84	3	63	20	0	28	50	1.48
15547995--15548146	73	2.1	73	80	7	166	27	14	20	37	1.91
15548648--15548857	105	2.0	105	95	0	375	26	18	12	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15550323--15550382	31	2.0	31	96	3	113	46	13	3	36	1.60
15550175--15550661	266	1.8	268	93	1	845	36	8	6	48	1.59
15550589--15550738	30	4.8	30	72	14	99	44	13	5	37	1.66
15551421--15551574	43	3.6	43	83	0	191	25	16	29	27	1.97
15553429--15553513	43	2.0	42	81	6	100	27	24	18	29	1.98
15557675--15557707	16	2.1	16	94	0	57	36	9	33	21	1.85
15557935--15557969	18	2.0	17	88	5	52	54	0	0	45	0.99
15557915--15558528	120	5.1	120	94	0	985	50	4	1	42	1.34
15558109--15558155	24	2.0	24	84	15	64	51	2	4	42	1.33
15558173--15558209	16	2.2	17	86	13	51	54	0	2	43	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222