genome.fa.s15.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  94  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29361738--29361889	39	3.5	45	75	13	158	35	8	22	33	1.85
29367921--29367972	23	2.3	23	96	3	97	32	7	26	32	1.85
29385534--29385600	33	2.0	33	94	0	116	28	7	22	41	1.80
29386901--29386930	3	10.0	3	100	0	60	33	0	33	33	1.58
29387861--29388012	82	1.9	81	81	5	189	37	15	7	39	1.75
29387861--29388030	82	2.1	81	80	4	180	38	15	7	38	1.76
29388908--29388989	43	1.9	43	82	5	103	21	17	29	31	1.96
29390489--29390540	26	2.0	26	100	0	104	38	7	23	30	1.83
29391601--29391665	34	1.9	34	93	0	112	27	23	23	26	2.00
29391936--29392150	27	7.8	27	85	7	290	35	15	16	32	1.90
29391943--29392150	60	3.8	55	85	8	280	35	14	16	32	1.90
29391936--29392150	87	2.6	80	88	5	297	35	15	16	32	1.90
29393139--29393213	33	2.3	33	83	4	98	41	13	24	21	1.88
29394661--29394700	17	2.4	17	95	0	71	62	10	10	17	1.53
29413686--29413718	11	3.0	11	83	16	50	36	27	0	36	1.57
29415071--29415112	22	2.0	20	90	4	57	35	9	14	40	1.78
29420179--29420231	27	2.0	27	96	3	99	28	33	22	15	1.94
29420104--29420437	102	3.3	100	92	3	560	30	29	20	20	1.97
29420385--29420434	26	1.9	26	100	0	100	28	34	24	14	1.93
29427697--29428029	102	3.3	101	90	1	497	32	27	19	21	1.97
29427843--29427997	33	4.6	33	69	21	115	34	27	19	18	1.95
29427874--29427926	27	2.0	27	96	0	97	28	30	22	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29427976--29428027	27	1.9	27	92	0	86	26	28	26	17	1.97
29433430--29433483	22	2.4	23	84	9	76	40	18	27	12	1.87
29434408--29434439	16	1.9	17	93	6	57	3	18	3	75	1.08
29450757--29450795	2	19.5	2	94	0	69	0	2	48	48	1.15
29453704--29453747	23	1.9	23	81	9	54	40	0	9	50	1.34
29461068--29461116	22	2.2	22	92	0	80	18	53	14	14	1.74
29469105--29469233	50	2.6	50	78	7	129	27	20	19	31	1.97
29469170--29469233	25	2.5	26	73	16	62	31	20	20	28	1.97
29470755--29470807	27	2.0	27	100	0	106	22	0	18	58	1.39
29470758--29470815	27	2.1	27	87	0	80	27	0	20	51	1.47
29490748--29490795	4	12.5	4	76	24	50	50	0	0	50	1.00
29490748--29490804	16	3.7	16	78	21	68	49	0	1	49	1.11
29490748--29490798	19	2.9	17	81	16	59	49	0	0	50	1.00
29490748--29490815	30	2.2	30	87	7	93	48	2	1	47	1.26
29490749--29490792	22	2.0	22	86	8	63	52	0	0	47	1.00
29495671--29495709	9	4.6	9	81	12	55	48	0	38	12	1.42
29499035--29499171	50	2.8	51	82	8	160	32	25	16	25	1.96
29500503--29500688	50	3.7	50	89	0	282	19	30	23	26	1.98
29500783--29500812	13	2.3	13	94	0	51	50	13	3	33	1.58
29503452--29503683	67	3.5	67	84	0	284	24	27	18	30	1.97
29506128--29506261	29	4.7	29	85	2	182	32	25	14	27	1.94
29510151--29510452	39	7.6	39	88	5	371	23	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29520346--29520384	20	2.0	20	90	10	62	15	23	5	56	1.59
29520587--29520730	50	2.8	50	82	12	166	25	29	20	24	1.99
29523424--29523465	15	2.6	17	78	21	54	19	0	9	71	1.13
29525706--29525996	41	7.1	41	83	1	350	34	16	27	20	1.94
29525706--29525996	123	2.4	123	85	2	388	34	16	27	20	1.94
29525706--29525996	82	3.5	82	88	1	395	34	16	27	20	1.94
29531333--29531400	26	2.5	27	77	15	70	33	8	7	50	1.61
29531524--29531655	67	2.0	67	92	0	219	28	30	18	22	1.98
29535623--29535716	43	2.2	43	92	0	152	30	26	23	19	1.98
29540148--29540183	18	2.0	18	94	0	63	47	5	2	44	1.41
29540659--29540808	28	5.4	28	96	0	248	26	12	28	32	1.93
29540659--29540825	56	3.0	55	90	3	248	26	13	26	32	1.93
29542287--29542436	28	5.4	28	96	0	248	26	12	28	32	1.93
29542287--29542453	56	3.0	55	90	3	248	26	13	26	32	1.93
29549966--29550008	18	2.4	18	81	14	61	46	4	9	39	1.57
29550476--29550629	28	5.5	28	96	0	256	25	12	28	32	1.93
29559568--29559753	41	4.5	41	82	2	230	33	13	30	22	1.93
29559570--29559753	81	2.2	82	83	3	228	33	14	29	22	1.93
29559861--29559924	32	2.0	32	100	0	128	31	25	12	31	1.92
29562670--29562734	25	2.6	25	87	0	94	47	20	13	18	1.82
29596231--29596505	140	2.0	140	86	0	388	24	25	26	23	2.00
29603154--29603205	15	3.5	15	67	0	50	34	34	17	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29603450--29603482	13	2.5	13	90	9	50	51	24	3	21	1.62
29605646--29605673	13	2.2	13	100	0	56	25	14	7	53	1.66
29606772--29606968	98	2.0	98	95	0	358	38	25	9	27	1.86
29607013--29607335	103	3.1	103	65	23	262	36	16	14	32	1.89
29606912--29607364	205	2.2	205	95	0	809	36	18	13	32	1.89
29607805--29607851	20	2.3	20	81	0	58	55	0	6	38	1.26
29607696--29607868	56	3.2	50	73	14	150	50	4	9	35	1.54
29609227--29609566	44	7.8	44	71	11	222	27	21	20	30	1.98
29609230--29609635	217	1.9	217	84	5	543	27	22	19	30	1.98
29609569--29610141	132	4.3	132	91	2	913	27	23	19	29	1.98
29613766--29613811	24	1.9	24	86	0	65	10	26	17	45	1.81
29615537--29615857	103	3.1	103	65	20	281	37	16	14	32	1.89
29615434--29615886	205	2.2	205	95	1	811	36	18	13	32	1.89
29616224--29616400	58	3.2	53	71	15	155	49	3	10	35	1.56
29616225--29616443	112	1.9	113	84	4	291	50	5	9	34	1.59
29621001--29621055	13	4.2	13	85	0	65	54	10	3	30	1.52
29621497--29621545	18	2.7	18	100	0	98	63	0	0	36	0.95
29622346--29622383	20	1.9	20	94	0	67	44	18	21	15	1.86
29630621--29630660	10	3.8	10	81	12	53	37	0	5	57	1.21
29631828--29631860	7	4.7	7	100	0	66	12	12	15	60	1.59
29636412--29636451	20	2.0	20	90	0	62	50	12	10	27	1.72
29636400--29636466	34	1.9	35	90	3	109	46	13	8	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29636435--29636474	14	2.9	14	84	0	53	42	17	7	32	1.77
29637514--29637571	20	2.8	20	75	17	57	43	5	1	50	1.35
29639031--29639080	11	4.5	11	78	7	57	24	30	2	44	1.65
29639031--29639080	22	2.3	22	89	6	75	24	30	2	44	1.65
29639042--29639141	51	2.0	51	86	7	141	26	26	2	46	1.64
29644734--29644788	20	2.7	21	88	2	76	23	9	38	29	1.85
29648342--29648422	39	2.1	39	100	0	162	19	14	9	55	1.67
29648742--29649614	29	29.9	29	88	9	1289	37	10	0	51	1.39
29648992--29649042	21	2.4	22	90	6	86	37	11	0	50	1.39
29649705--29649739	17	2.1	17	88	0	52	14	48	5	31	1.67
29649646--29649801	79	2.0	79	92	0	258	18	48	5	27	1.71
29649843--29649881	21	1.9	19	85	10	51	10	17	17	53	1.71
29651849--29651900	17	3.1	17	91	2	79	23	23	5	48	1.72
29655431--29655483	17	3.1	17	94	0	88	22	24	1	50	1.59
29656961--29657042	21	3.9	21	85	1	83	54	17	26	1	1.50
29660486--29660668	54	3.5	51	78	6	154	24	16	27	31	1.96
29671121--29671189	30	2.3	30	80	7	77	23	8	21	46	1.79
29670882--29671196	173	1.8	174	84	2	436	26	16	20	35	1.94
29674535--29674606	23	3.1	23	90	7	119	31	26	19	22	1.97
29706520--29706574	23	2.6	21	77	13	60	29	0	16	54	1.42
29709704--29709839	50	2.7	50	81	0	155	27	22	30	20	1.98
29710100--29710148	20	2.5	20	81	15	66	55	4	28	12	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29723679--29723720	21	2.0	21	95	0	75	35	23	16	23	1.95
29725897--29726072	56	3.1	56	97	0	334	44	9	23	23	1.81
29727200--29727424	40	5.7	40	84	5	278	24	22	27	25	2.00
29727207--29727457	119	2.1	119	81	7	278	26	21	26	25	1.99
29733891--29734122	56	4.1	56	98	0	446	45	9	23	22	1.80
29735248--29735472	40	5.7	40	85	5	278	24	21	28	26	1.99
29735248--29735505	79	3.2	80	82	5	222	25	20	27	25	1.99
29739736--29740032	50	5.8	50	83	3	301	27	21	29	21	1.99
29748876--29749001	43	2.9	43	88	4	191	30	13	19	36	1.91
29749971--29750069	49	2.0	49	98	0	189	37	0	30	32	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222