genome.fa.s15.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  138  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44844526--44844580	21	2.9	19	76	15	60	7	23	1	67	1.26
44862532--44862601	16	4.4	16	92	0	95	31	1	34	32	1.67
44862580--44862674	45	2.1	44	88	1	136	32	6	27	33	1.82
44862834--44862868	18	2.0	17	88	5	52	54	0	0	45	0.99
44862755--44863027	147	1.9	147	96	1	512	46	3	3	46	1.36
44862961--44863002	15	2.7	16	82	14	52	52	2	0	45	1.13
44862970--44863011	15	2.9	15	82	10	52	52	0	0	47	1.00
44863080--44863131	15	3.6	15	80	12	56	53	1	0	44	1.11
44862959--44863266	119	2.6	120	92	4	505	50	4	2	42	1.35
44863192--44863268	28	2.9	27	70	18	70	55	0	2	41	1.13
44863271--44863478	91	2.3	91	84	2	265	46	2	4	46	1.37
44867104--44867134	15	2.1	15	93	0	53	45	9	9	35	1.70
44877583--44877647	34	1.9	34	90	0	103	9	24	4	61	1.45
44877748--44877804	17	3.4	17	68	7	53	66	24	1	7	1.26
44877744--44877863	33	3.3	35	84	11	145	67	21	0	10	1.25
44877744--44877844	39	2.8	33	85	10	121	67	22	0	8	1.25
44877770--44877887	40	3.0	39	87	8	159	66	19	1	12	1.33
44882824--44882853	12	2.5	12	94	0	51	0	56	0	43	0.99
44888339--44888403	22	3.1	21	76	13	71	60	20	0	20	1.37
44888899--44888955	29	2.0	28	83	6	71	31	8	8	50	1.64
44889397--44889421	11	2.3	11	100	0	50	68	0	16	16	1.22
44890247--44890304	11	5.5	11	80	12	77	70	1	1	25	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44890245--44890459	9	21.9	10	73	16	100	63	3	2	30	1.24
44890245--44890304	19	3.0	19	85	9	84	70	1	1	26	1.07
44890247--44890308	31	2.0	30	90	9	99	67	1	1	29	1.09
44890346--44890387	19	2.2	20	83	12	52	71	7	4	16	1.26
44890423--44890453	8	3.8	8	95	4	53	61	0	0	38	0.96
44891016--44891107	29	3.2	28	77	18	91	34	1	1	63	1.09
44891024--44891105	19	4.5	17	76	11	74	34	1	1	63	1.10
44891017--44891114	27	3.6	27	78	10	99	33	1	2	63	1.13
44891024--44891105	9	9.0	9	78	12	87	34	1	1	63	1.10
44892408--44892490	40	2.1	40	100	0	166	39	14	27	18	1.89
44894944--44895008	29	2.2	29	88	0	94	20	23	12	44	1.84
44900262--44900325	24	2.7	24	80	0	74	23	37	21	17	1.94
44900785--44900813	14	2.1	14	100	0	58	31	0	13	55	1.39
44907205--44907252	20	2.4	20	79	6	53	41	0	0	58	0.98
44909994--44910084	29	3.2	29	79	6	123	32	9	13	43	1.76
44910805--44910903	17	5.8	17	65	9	58	26	17	19	37	1.93
44910786--44910866	34	2.4	34	85	0	99	29	18	17	34	1.94
44910810--44910897	34	2.6	33	85	7	106	26	17	19	37	1.93
44917072--44917133	28	2.2	29	83	8	76	56	0	3	40	1.15
44917236--44917271	6	6.0	6	100	0	72	66	0	0	33	0.92
44917260--44917324	29	2.2	30	81	15	82	50	3	0	46	1.17
44925559--44925847	51	5.7	49	76	9	276	30	25	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44925557--44925847	102	2.9	101	86	3	377	30	25	14	28	1.95
44925559--44925843	153	1.9	153	85	4	396	30	25	14	28	1.95
44929571--44929693	49	2.6	47	81	2	138	30	13	26	29	1.94
44935801--44935841	20	2.0	20	86	9	57	46	0	17	36	1.48
44936064--44936112	25	2.0	25	83	0	62	38	0	16	44	1.48
44936503--44936588	43	2.0	43	95	0	154	50	2	24	23	1.61
44936508--44936572	16	4.4	16	67	25	52	50	3	26	20	1.62
44937897--44937993	49	2.0	49	93	0	167	43	6	25	24	1.77
44956321--44956428	54	2.0	54	96	0	198	44	12	7	36	1.70
44958364--44958407	20	2.2	20	84	8	54	52	9	6	31	1.59
44958547--44958588	21	2.0	22	86	13	61	42	7	7	42	1.59
44964963--44964999	9	4.1	9	85	0	56	48	13	8	29	1.71
44965311--44965342	17	1.9	17	93	6	57	28	25	0	46	1.53
44973351--44973404	15	3.5	15	76	5	54	57	3	0	38	1.17
44974078--44974143	34	2.0	32	83	13	82	48	1	10	39	1.47
44976578--44976633	28	2.0	28	100	0	112	42	10	10	35	1.74
44986975--44987037	23	2.7	23	82	2	81	34	14	12	38	1.84
44990797--44990834	18	2.1	18	90	0	58	42	2	39	15	1.61
44994551--44994579	14	2.1	14	100	0	58	41	31	6	20	1.79
44998243--44998288	24	1.9	24	86	0	65	45	0	2	52	1.13
45002128--45002216	43	2.1	43	100	0	178	30	23	13	32	1.93
45008536--45008569	12	2.8	12	90	0	59	76	17	0	5	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45008536--45008565	4	7.5	4	92	0	51	76	20	0	3	0.92
45010784--45011154	44	8.7	43	69	12	183	24	20	23	31	1.98
45010741--45011158	129	3.2	129	85	2	597	25	20	22	31	1.98
45011165--45011327	50	3.2	50	86	0	218	23	15	23	36	1.94
45011122--45011358	100	2.3	102	71	4	219	26	18	22	33	1.96
45011324--45012229	44	20.8	44	70	8	392	27	25	18	27	1.98
45011324--45012232	218	4.2	218	92	0	1496	27	25	18	27	1.98
45013055--45013764	354	2.0	354	100	0	1420	39	13	14	32	1.85
45014047--45014099	7	7.4	7	78	16	56	16	13	0	69	1.18
45014047--45014096	14	3.5	14	83	5	64	16	12	0	72	1.13
45014056--45014096	8	5.5	8	80	16	52	14	9	0	75	1.04
45014049--45014106	15	3.8	15	79	9	64	15	12	0	72	1.12
45014048--45014099	21	2.4	21	90	3	77	17	11	0	71	1.15
45014983--45015051	6	11.7	6	81	3	68	13	7	10	69	1.36
45014981--45015054	35	2.1	35	85	5	96	12	6	9	71	1.30
45014988--45015051	23	2.7	24	82	4	85	14	6	10	68	1.37
45019133--45019162	4	7.5	4	92	0	51	76	20	0	3	0.92
45019103--45019167	12	5.2	12	74	7	58	67	12	6	13	1.40
45019358--45019388	13	2.4	13	94	0	53	74	0	3	22	0.96
45026772--45026878	35	3.1	36	81	5	112	16	14	24	43	1.86
45033307--45033486	96	1.9	96	82	0	225	32	27	19	20	1.96
45036939--45037031	9	10.7	9	73	17	54	65	6	0	27	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45036932--45036982	17	2.8	19	78	21	56	64	3	0	31	1.11
45036955--45037022	16	4.1	15	72	23	57	67	5	0	26	1.13
45036955--45037031	26	3.1	25	74	5	75	66	5	0	28	1.13
45037825--45037885	28	2.2	28	93	0	104	36	8	0	55	1.30
45042167--45042244	29	2.8	28	77	9	79	62	7	3	25	1.39
45043037--45043335	90	3.3	90	83	4	381	27	8	14	50	1.70
45046593--45046751	43	3.7	42	84	7	178	30	28	17	23	1.97
45046595--45046751	86	1.8	85	82	6	201	29	29	17	22	1.97
45047274--45047312	19	2.0	20	85	9	55	51	28	0	20	1.48
45048993--45049073	38	2.1	38	86	4	110	28	30	23	17	1.97
45049160--45049255	47	2.0	48	84	7	126	33	3	4	59	1.32
45049232--45049322	18	5.2	17	70	17	71	35	4	3	57	1.35
45049225--45049357	69	2.0	64	85	10	178	36	4	4	54	1.41
45049262--45049357	32	3.0	32	75	13	106	37	5	4	53	1.43
45051535--45051715	54	3.4	53	82	6	215	29	25	16	28	1.97
45052643--45052675	15	2.2	15	89	10	50	39	24	6	30	1.79
45052771--45052801	14	2.2	14	94	0	53	25	35	0	38	1.56
45054506--45054556	23	2.3	22	83	10	68	39	9	1	49	1.47
45055238--45055272	18	1.9	18	94	0	61	25	8	40	25	1.84
45079030--45079066	17	2.2	16	90	4	56	16	2	2	78	0.98
45086887--45086932	19	2.3	20	88	3	67	54	2	10	32	1.47
45098407--45098438	4	8.0	4	100	0	64	25	0	25	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45110130--45110276	47	3.1	46	85	7	183	29	9	20	40	1.84
45114676--45114929	47	5.4	47	86	4	316	29	13	21	35	1.92
45114679--45114929	94	2.7	94	89	1	369	28	13	21	35	1.92
45118236--45118265	7	4.3	7	91	0	51	26	0	26	46	1.53
45119941--45120073	69	1.9	70	89	1	205	33	14	15	36	1.88
45121560--45121886	47	7.0	47	86	0	447	32	11	29	27	1.91
45121679--45121752	22	3.2	22	67	23	62	29	13	32	24	1.93
45121775--45121850	23	3.2	25	62	24	63	28	13	34	23	1.92
45121560--45121886	94	3.5	94	94	0	555	32	11	29	27	1.91
45122050--45122157	37	2.9	37	91	0	162	22	20	33	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222