genome.fa.s15.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  212  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67066464--67066514	3	17.3	3	79	4	59	39	1	0	58	1.09
67067016--67067064	9	5.4	9	87	0	62	38	22	12	26	1.89
67067161--67067204	18	2.4	18	88	0	61	13	2	43	40	1.57
67070228--67070299	38	1.9	37	85	2	99	47	13	19	19	1.83
67071185--67071290	18	5.6	18	69	16	61	60	4	4	30	1.38
67076175--67076209	18	1.9	18	88	11	54	40	2	0	57	1.14
67076763--67076804	22	1.9	22	85	9	59	64	0	4	30	1.14
67077568--67077596	6	5.0	6	91	8	51	17	0	0	82	0.66
67077568--67077596	11	2.5	12	94	5	51	17	0	0	82	0.66
67078342--67078379	14	2.7	14	87	0	58	47	7	0	44	1.32
67078339--67078368	10	3.0	10	95	0	51	50	6	0	43	1.28
67078389--67078418	12	2.6	12	94	5	53	36	6	0	56	1.26
67078343--67078474	67	2.0	68	84	1	176	39	9	2	49	1.47
67081904--67081946	8	5.4	8	86	8	61	81	9	0	9	0.88
67081902--67081946	17	2.9	15	87	12	72	82	8	0	8	0.85
67082788--67082840	8	6.6	8	100	0	106	77	0	11	11	1.00
67082788--67082847	24	2.5	24	94	0	93	76	0	11	11	1.02
67084039--67084566	45	12.0	45	70	12	117	27	23	24	24	2.00
67084076--67085720	88	18.7	88	93	1	2755	27	23	24	24	2.00
67087477--67087523	24	2.0	24	84	12	62	29	8	6	55	1.55
67087564--67087593	12	2.6	12	94	5	53	36	6	0	56	1.26
67087520--67087649	67	1.9	68	84	1	172	39	9	2	49	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67089858--67089970	54	2.1	55	91	3	185	44	13	18	23	1.85
67094494--67094521	14	2.0	14	100	0	56	71	7	0	21	1.09
67094506--67094567	18	3.3	18	77	8	52	61	6	0	32	1.21
67094847--67094900	26	2.1	26	86	6	74	29	20	9	40	1.83
67101456--67101597	51	2.7	52	91	6	214	43	12	22	21	1.86
67101605--67101638	2	17.0	2	87	0	50	50	2	0	47	1.16
67102712--67102865	46	3.3	46	89	4	220	43	19	14	22	1.87
67106615--67106724	42	2.6	42	86	4	150	31	26	16	25	1.96
67106615--67106771	43	3.7	42	83	7	147	33	27	15	24	1.95
67108012--67108037	13	2.0	13	100	0	52	46	0	23	30	1.53
67112502--67112535	17	2.0	17	88	11	52	55	0	17	26	1.42
67118937--67119026	4	22.8	4	71	8	60	70	0	5	24	1.09
67118927--67119026	16	6.4	16	75	11	73	71	0	6	23	1.08
67131629--67131694	32	2.0	33	88	2	98	39	13	7	39	1.73
67132566--67132626	22	2.7	22	73	16	63	22	27	0	49	1.50
67132566--67132626	10	5.6	10	76	16	59	22	27	0	49	1.50
67139773--67139819	23	2.0	24	83	8	60	27	21	10	40	1.86
67140541--67140769	46	5.0	45	88	4	332	28	25	9	36	1.87
67140541--67140767	92	2.5	92	94	1	393	28	25	9	37	1.87
67142568--67142628	18	3.4	18	86	0	77	18	24	9	47	1.78
67143891--67143922	9	3.6	9	91	0	55	40	21	12	25	1.88
67149966--67150008	21	2.0	21	86	8	61	34	0	6	58	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67150287--67150317	16	1.9	16	93	0	53	22	32	6	38	1.80
67153451--67153537	39	2.3	38	78	11	99	59	1	1	37	1.12
67163713--67163761	6	8.2	6	93	0	80	44	0	34	20	1.52
67164484--67164514	15	2.1	15	100	0	62	25	22	19	32	1.97
67181720--67181836	31	3.9	31	69	22	88	46	11	17	24	1.82
67181944--67181980	16	2.2	17	95	4	67	70	0	0	29	0.88
67182989--67183022	18	1.9	18	88	5	52	52	5	14	26	1.64
67183580--67183643	30	2.1	31	91	2	103	26	26	6	40	1.79
67183590--67183637	15	3.2	15	71	11	53	27	22	8	41	1.82
67188214--67188277	30	2.1	31	91	2	103	26	26	6	40	1.79
67188224--67188271	15	3.2	15	71	11	53	27	22	8	41	1.82
67194286--67194340	18	3.1	17	76	5	56	52	3	1	41	1.29
67199027--67199084	30	1.9	30	86	6	82	56	3	6	32	1.42
67199023--67199198	58	3.0	58	75	12	137	60	3	3	32	1.30
67199290--67199379	39	2.4	37	77	18	96	62	1	4	32	1.22
67206501--67206544	23	1.9	23	90	0	70	11	11	15	61	1.57
67210928--67210955	6	4.7	6	100	0	56	32	0	14	53	1.41
67212472--67212548	9	7.8	9	72	18	55	33	2	2	61	1.24
67218050--67218323	42	6.5	42	89	0	379	48	9	15	26	1.75
67221854--67221894	21	2.0	21	90	0	64	14	56	4	24	1.58
67224405--67224487	28	2.9	30	73	14	93	30	14	12	43	1.82
67224456--67224519	32	2.0	33	84	3	85	37	14	9	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67225112--67225159	24	2.0	25	83	4	62	37	0	2	60	1.09
67225369--67225417	14	3.6	14	78	13	57	67	0	32	0	0.91
67226234--67226404	56	3.1	55	85	6	242	33	15	10	40	1.81
67226656--67226692	16	2.3	16	95	0	65	40	0	2	56	1.13
67229119--67229154	10	3.6	10	88	0	54	11	0	8	80	0.90
67229399--67229508	30	3.7	30	75	7	100	31	23	4	40	1.75
67230002--67230046	3	14.3	3	81	9	54	73	0	26	0	0.84
67230008--67230061	13	4.2	13	88	4	74	75	0	24	0	0.80
67230005--67230067	19	3.4	19	84	6	76	77	0	22	0	0.76
67230014--67230067	10	5.2	10	78	8	54	79	0	20	0	0.73
67230005--67230067	6	10.2	6	83	11	65	77	0	22	0	0.76
67230883--67230923	20	2.0	21	90	4	66	21	12	4	60	1.50
67230928--67231221	18	16.5	17	70	18	140	32	13	10	42	1.80
67230928--67231220	17	16.5	16	68	20	90	32	13	10	43	1.80
67230927--67231023	35	2.8	36	78	10	119	31	16	12	39	1.86
67231037--67231079	23	1.9	22	85	4	59	44	9	6	39	1.64
67230932--67231221	35	8.1	34	69	16	117	32	13	11	42	1.80
67231167--67231202	16	2.2	16	95	0	63	33	13	11	41	1.80
67231193--67231259	35	1.9	35	84	0	89	41	5	5	46	1.53
67235050--67235079	14	2.1	15	93	6	53	43	0	0	56	0.99
67237567--67237616	26	1.9	26	84	8	66	64	4	0	32	1.12
67240870--67240908	17	2.4	16	87	12	53	51	0	2	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67241985--67242050	32	2.1	32	97	0	123	51	0	19	28	1.47
67242036--67242076	21	2.0	20	85	4	55	73	0	9	17	1.09
67243528--67243572	17	2.7	16	80	10	54	75	4	2	17	1.07
67254665--67254732	31	2.2	30	82	10	84	41	10	5	42	1.63
67260005--67260064	30	2.0	31	83	3	77	50	6	0	43	1.28
67260670--67260737	33	2.1	31	81	5	73	8	8	11	70	1.34
67263607--67263642	16	2.3	15	90	4	54	33	2	5	58	1.36
67264873--67264909	16	2.3	16	95	0	65	37	2	10	48	1.52
67266954--67266997	22	2.0	22	82	8	54	75	6	0	18	1.02
67270580--67270632	21	2.5	21	87	0	70	30	32	7	30	1.85
67273558--67273585	2	14.0	2	100	0	56	50	50	0	0	1.00
67273738--67273788	3	17.0	3	82	8	59	1	33	0	64	1.05
67283095--67283238	75	1.9	74	92	1	243	34	18	19	28	1.95
67285279--67285809	50	10.6	50	69	5	266	25	19	20	33	1.97
67285286--67285873	100	5.9	100	81	2	572	26	19	19	33	1.96
67286152--67286209	24	2.4	24	82	0	71	29	22	10	37	1.87
67304192--67304294	30	3.4	29	72	19	95	26	3	47	22	1.68
67304182--67304298	60	2.0	60	92	0	198	23	5	47	23	1.72
67307609--67307652	14	3.1	14	80	3	52	56	2	2	38	1.24
67307585--67307652	28	2.4	28	82	2	73	52	5	5	35	1.50
67307713--67307750	3	12.7	3	100	0	76	68	0	0	31	0.90
67309289--67309671	195	2.0	195	87	1	552	35	24	13	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67314462--67314579	9	12.4	9	70	15	60	62	4	5	27	1.35
67320383--67320449	34	1.9	35	84	3	91	44	11	10	32	1.75
67320928--67321012	28	3.0	27	75	13	75	30	5	3	60	1.38
67320917--67320967	19	2.7	18	77	17	50	27	1	5	64	1.27
67321064--67321109	11	4.7	10	78	21	53	39	0	0	60	0.97
67321048--67321112	29	2.2	29	76	10	71	30	6	0	63	1.19
67321067--67321159	29	3.2	28	77	13	82	33	2	1	63	1.13
67321107--67321164	26	2.2	27	87	9	84	25	3	1	68	1.14
67321076--67321215	19	7.2	19	67	15	63	30	4	2	62	1.26
67321192--67321258	19	3.7	18	71	15	57	32	2	1	62	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222