genome.fa.s15.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  66  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20179180--20179338	75	2.1	75	81	2	176	34	16	13	35	1.88
20179218--20179337	50	2.4	50	84	2	152	34	15	14	35	1.88
20179318--20179387	25	2.8	24	76	6	68	37	15	17	30	1.91
20185484--20185520	11	3.4	11	92	0	56	21	5	43	29	1.75
20189447--20189479	17	1.9	17	93	0	57	27	6	3	63	1.32
20195774--20195846	25	2.9	25	82	13	89	35	23	17	23	1.95
20203388--20203458	35	2.0	35	86	0	97	26	19	12	40	1.88
20208452--20208540	25	3.6	24	72	13	81	33	29	13	23	1.93
20208456--20208570	50	2.3	50	87	3	160	35	24	13	26	1.93
20210406--20210470	26	2.6	25	85	7	96	36	24	15	23	1.93
20212717--20212759	20	2.2	20	91	0	68	23	9	16	51	1.73
20215666--20215764	50	2.0	50	93	0	171	16	31	15	37	1.89
20220832--20220898	21	3.2	21	71	12	57	32	16	29	20	1.95
20220833--20221016	41	4.5	41	85	0	242	35	15	26	22	1.94
20223786--20223856	28	2.5	28	90	2	106	35	4	39	21	1.73
20224814--20224876	28	2.2	28	88	0	90	38	3	36	22	1.70
20226377--20226449	26	2.8	26	85	6	96	36	12	16	34	1.86
20234513--20234595	39	2.2	36	79	12	87	33	4	33	27	1.78
20234512--20234594	21	4.3	19	75	15	64	32	4	33	28	1.78
20244814--20244931	9	13.6	9	70	13	70	33	1	16	47	1.57
20244802--20244870	36	2.0	34	88	5	102	34	1	17	46	1.57
20244802--20244909	18	6.2	17	68	14	67	35	1	15	47	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20244814--20244932	52	2.3	52	94	2	204	34	1	16	47	1.57
20255891--20255936	15	3.1	15	84	9	51	52	28	2	17	1.56
20255911--20255950	14	2.9	14	84	0	53	52	25	5	17	1.64
20255925--20255978	21	2.6	21	84	0	63	48	24	3	24	1.67
20256138--20256420	124	2.3	123	88	0	404	31	19	16	32	1.94
20256323--20256500	86	2.1	86	90	0	275	30	20	17	31	1.96
20256433--20256626	98	2.0	98	88	2	291	34	15	15	33	1.90
20260084--20260124	21	2.0	21	81	18	50	21	26	19	31	1.97
20264854--20264882	11	2.5	12	88	11	51	58	0	0	41	0.98
20265806--20265856	11	4.6	11	76	9	50	3	13	13	68	1.34
20265806--20265856	22	2.3	22	93	0	84	3	13	13	68	1.34
20266353--20266389	19	2.0	20	84	10	51	18	0	10	70	1.16
20266365--20266412	22	2.2	21	82	10	53	18	2	12	66	1.33
20269125--20269156	11	2.9	11	100	0	64	62	28	9	0	1.26
20270065--20270165	20	5.1	19	66	21	64	41	17	28	11	1.85
20272287--20272311	13	1.9	13	100	0	50	56	16	16	12	1.68
20273256--20273281	5	5.2	5	100	0	52	80	0	0	19	0.71
20277730--20277755	13	2.0	13	100	0	52	69	7	0	23	1.14
20288533--20288774	50	4.7	50	81	6	220	27	21	28	22	1.99
20288976--20289003	12	2.3	12	100	0	56	57	7	17	17	1.62
20289009--20289041	12	2.8	12	100	0	66	66	0	24	9	1.20
20304468--20304626	55	2.9	55	81	9	189	24	28	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20305292--20305356	34	1.9	34	100	0	130	30	18	24	26	1.98
20312455--20312481	10	2.7	10	100	0	54	40	0	7	51	1.30
20319989--20320143	84	1.8	84	86	8	226	40	18	9	32	1.83
20320318--20320381	19	3.3	19	76	4	74	65	6	3	25	1.31
20320573--20320732	20	7.8	19	66	21	67	32	5	1	60	1.29
20320593--20320722	48	2.7	49	81	10	151	33	6	1	58	1.32
20320573--20320741	67	2.5	66	80	9	171	31	4	1	61	1.27
20320679--20320766	19	4.5	19	79	9	88	37	1	0	61	1.04
20320659--20320771	29	3.8	29	81	7	120	34	2	0	61	1.16
20320634--20320771	10	14.2	10	73	13	92	34	2	0	61	1.16
20320646--20320743	9	10.1	10	78	11	71	32	3	1	63	1.17
20321178--20321274	31	3.1	31	95	2	176	30	10	13	45	1.77
20321820--20321894	10	7.4	10	80	14	91	78	10	9	1	1.02
20321864--20321909	13	3.8	13	80	16	62	76	10	10	2	1.12
20321820--20321909	9	8.5	11	79	14	84	76	11	10	2	1.10
20326432--20326527	31	3.1	31	93	3	165	31	9	12	46	1.73
20328507--20328544	20	2.0	20	89	5	60	15	5	2	76	1.08
20329348--20329377	12	2.6	12	94	5	53	36	6	0	56	1.26
20332127--20332169	15	2.9	15	92	0	68	25	23	11	39	1.88
20336483--20336750	87	3.1	87	88	0	376	29	19	25	25	1.99
20336804--20337127	43	7.6	44	66	16	157	31	21	21	25	1.98
20336800--20337127	127	2.6	128	93	1	561	32	21	21	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20337835--20337879	20	2.3	20	84	3	65	13	4	4	77	1.07
20337833--20337876	19	2.3	18	85	11	61	13	4	2	79	0.98
20338438--20338477	3	13.3	3	100	0	80	32	0	0	67	0.91
20338545--20338587	23	1.9	22	81	13	52	27	4	6	60	1.43
20339264--20339467	108	1.9	107	90	3	331	28	18	18	34	1.94
20358315--20358370	21	2.7	23	76	20	61	58	0	5	35	1.21
20363348--20363390	9	4.9	9	82	5	61	46	0	9	44	1.35
20363348--20363401	26	2.1	26	100	0	108	44	0	7	48	1.31
20364504--20364560	20	2.8	20	89	0	78	49	0	29	21	1.50
20370191--20370273	6	12.5	6	74	18	67	79	6	1	13	0.97
20370202--20370273	20	3.5	20	79	12	67	79	6	1	12	0.99
20370186--20370259	29	2.7	29	87	8	102	75	8	1	14	1.09
20370284--20370478	3	66.0	3	69	14	68	63	5	4	27	1.35
20370419--20370522	4	25.5	4	77	14	74	73	0	0	25	0.96
20370419--20370512	21	4.3	21	74	24	79	72	1	1	25	0.98
20370395--20370522	67	2.0	66	85	13	169	71	2	0	25	1.02
20370380--20370518	41	3.5	38	75	16	97	71	2	1	25	1.06
20370389--20370522	10	12.8	10	70	20	64	71	2	0	25	1.02
20379891--20379999	41	2.6	41	94	1	182	27	21	28	22	1.99
20382756--20383058	40	7.6	40	89	2	387	27	28	20	24	1.99
20401365--20401544	28	6.6	27	94	2	288	31	28	13	26	1.94
20401365--20401544	55	3.3	55	94	1	299	31	28	13	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20401365--20401544	83	2.2	82	93	1	306	31	28	13	26	1.94
20409429--20409553	28	4.6	27	93	2	187	31	28	13	26	1.94
20409429--20409553	55	2.3	56	90	2	173	31	28	13	26	1.94
20410470--20410503	16	2.1	16	94	0	59	32	26	5	35	1.81
20418275--20419092	279	3.0	272	86	3	1186	37	15	12	34	1.85
20420248--20420306	29	2.0	31	86	6	86	30	5	15	49	1.66
20421588--20421642	4	13.8	4	96	0	101	50	25	0	23	1.49
20422062--20422100	19	2.1	19	85	9	53	38	0	0	61	0.96
20422059--20422122	25	2.5	26	78	21	80	37	1	0	60	1.06
20423552--20423594	14	2.8	16	72	13	54	53	25	6	13	1.65
20424525--20424580	25	2.2	25	96	0	103	28	23	3	44	1.70
20426128--20426252	30	4.1	29	71	25	91	46	1	2	49	1.24
20427605--20427659	28	2.0	27	92	3	92	43	18	18	20	1.88
20429007--20429537	32	16.6	32	85	1	654	32	9	16	42	1.79
20430741--20430822	41	2.0	41	97	0	155	40	14	10	34	1.81
20433055--20433201	41	3.6	40	84	7	188	35	17	27	19	1.94
20439747--20439964	79	2.8	81	80	11	238	25	26	22	26	2.00
20439780--20439964	40	4.7	40	83	7	234	25	27	22	24	2.00
20443060--20443232	41	4.2	41	77	2	152	36	12	28	21	1.90
20443064--20443265	82	2.5	82	79	3	201	37	12	27	22	1.90
20450560--20450620	15	3.9	15	84	6	77	73	1	0	24	0.92
20450558--20450628	32	2.3	31	81	15	78	70	5	0	23	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20451158--20451219	33	1.9	32	83	6	81	30	1	19	48	1.58
20452491--20452629	3	46.3	3	100	0	278	33	33	0	33	1.58
20461419--20461497	37	2.1	37	88	4	115	25	30	18	25	1.98
20461616--20462093	47	10.1	47	93	1	785	29	30	8	31	1.87
20461616--20462093	143	3.4	143	94	0	816	29	30	8	31	1.87
20467599--20467774	37	4.8	37	96	0	298	39	13	21	26	1.90
20467737--20467860	46	2.8	46	91	3	200	33	16	22	27	1.96
20471472--20471523	26	2.0	26	100	0	104	42	19	11	26	1.85
20472189--20472287	51	1.9	51	89	0	153	29	15	24	31	1.95
20472299--20472438	51	2.7	50	79	4	154	28	19	25	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222