Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  177  of  222  ( 26535 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56809355--56809405
24
2.0
25
88
7
77
29
7
19
43
1.79
56812565--56812602
16
2.4
16
90
0
58
31
0
34
34
1.58
56812581--56812690
45
2.6
44
80
12
131
34
5
28
31
1.80
56812584--56812690
44
2.6
40
76
16
126
35
5
28
30
1.80
56812834--56812868
18
1.9
18
100
0
70
60
0
0
40
0.97
56812848--56813028
61
3.0
61
71
12
192
50
5
0
43
1.29
56816384--56816428
20
2.3
19
85
7
63
75
4
0
20
0.97
56818019--56818112
43
2.2
43
96
0
170
47
17
6
28
1.71
56821220--56821303
25
3.3
26
75
5
100
14
26
23
35
1.93
56821230--56821351
49
2.5
50
82
2
140
16
24
22
36
1.94
56828054--56828103
21
2.5
20
83
3
64
24
20
12
44
1.85
56831319--56832136
210
3.9
210
80
5
700
27
18
22
30
1.97
56831230--56832148
70
13.1
71
75
5
601
26
18
23
31
1.97
56840488--56840544
21
2.8
21
86
7
73
19
24
19
36
1.94
56848738--56848762
2
12.5
2
100
0
50
48
52
0
0
1.00
56849729--56849799
33
2.2
33
84
0
88
36
8
12
42
1.73
56854606--56854641
6
6.0
6
100
0
72
50
0
16
33
1.46
56857814--56857852
14
2.7
15
84
4
53
43
5
10
41
1.61
56859608--56859653
24
1.9
24
86
0
65
50
4
26
19
1.66
56864071--56864125
26
2.2
26
83
3
67
20
12
34
32
1.90
56864039--56864180
76
1.9
75
83
1
185
23
15
27
33
1.95
56865252--56865423
84
2.0
84
96
0
317
31
30
10
27
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56869786--56869818
17
1.9
17
93
0
57
36
0
3
60
1.12
56871905--56872105
76
2.7
72
81
5
233
44
8
6
40
1.62
56877659--56877701
22
2.0
22
86
9
61
11
4
13
69
1.33
56877653--56877701
22
2.2
22
82
10
55
12
4
14
69
1.33
56882857--56882922
28
2.4
26
85
9
87
0
21
1
77
0.85
56882867--56882910
15
3.1
15
81
18
58
0
20
0
79
0.73
56882941--56883006
23
3.0
23
72
19
77
9
24
42
24
1.83
56882941--56883048
43
2.5
42
85
5
110
9
23
43
24
1.82
56883146--56883220
18
3.9
19
75
18
75
4
14
0
81
0.83
56883154--56883221
18
4.0
17
80
16
79
2
16
0
80
0.82
56883140--56883213
24
3.2
23
83
9
87
5
12
0
82
0.83
56883146--56883200
6
9.3
6
75
16
53
3
14
0
81
0.82
56883314--56883365
21
2.5
21
84
9
63
0
34
0
65
0.93
56883584--56883626
12
3.6
12
90
0
68
2
0
58
39
1.11
56883584--56883627
3
14.7
3
87
0
61
2
0
59
38
1.10
56883905--56884064
30
5.4
30
71
10
105
41
6
20
31
1.77
56884335--56885176
74
11.1
74
89
5
1059
37
19
15
27
1.92
56884349--56885176
150
5.4
152
87
6
1110
36
20
15
27
1.92
56886046--56886112
11
6.1
11
79
11
50
1
7
10
80
0.96
56886052--56886112
13
4.5
13
80
12
52
0
6
9
83
0.80
56886063--56886111
7
6.9
7
80
11
55
0
4
12
83
0.77
56886063--56886111
16
3.2
16
81
18
61
0
4
12
83
0.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56886063--56886112
15
3.3
15
76
20
59
0
4
12
84
0.76
56891659--56891937
17
15.6
18
71
19
126
42
11
10
35
1.76
56891659--56891698
19
2.2
18
86
4
53
40
7
7
45
1.61
56891661--56891937
36
7.7
36
74
14
141
42
11
10
34
1.76
56891734--56891806
20
3.7
19
89
10
112
34
12
12
41
1.80
56892419--56892457
7
5.6
7
81
0
51
0
20
0
79
0.73
56892418--56892471
19
2.6
21
85
8
67
0
22
0
77
0.76
56892420--56892472
27
1.9
28
92
3
90
0
22
0
77
0.77
56892492--56892583
43
2.1
44
85
4
132
11
25
42
20
1.86
56892723--56892784
6
10.5
6
74
22
60
3
16
0
80
0.83
56892721--56892787
18
3.5
20
80
15
88
2
16
0
80
0.83
56892705--56892771
34
2.0
34
85
11
93
5
13
0
80
0.88
56892722--56892780
28
2.1
27
80
17
68
3
15
0
81
0.82
56892881--56892932
21
2.5
21
84
9
63
0
34
0
65
0.93
56893150--56893180
15
2.1
15
93
0
53
0
6
58
35
1.24
56893461--56893613
30
5.2
30
75
14
120
39
5
22
32
1.76
56894095--56894133
14
2.7
15
80
8
53
0
12
5
82
0.83
56894373--56894413
21
2.0
21
95
0
73
4
21
51
21
1.67
56894462--56894539
12
6.8
12
76
15
67
0
21
0
78
0.76
56894480--56894539
16
3.7
16
80
17
70
0
21
0
78
0.75
56894462--56894546
36
2.4
36
86
5
120
0
23
0
76
0.79
56894480--56894547
25
2.6
28
80
13
67
0
25
0
75
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56894463--56894538
20
4.0
20
74
20
81
0
22
0
77
0.77
56895088--56895199
30
3.8
28
74
11
98
41
7
20
31
1.79
56895102--56895201
30
3.4
29
79
6
112
44
5
18
33
1.71
56907491--56907917
44
9.9
42
73
9
342
28
21
17
31
1.96
56907384--56908063
129
5.2
129
78
6
509
29
21
17
31
1.96
56907469--56907918
217
2.1
217
93
0
756
28
21
17
32
1.96
56908042--56908091
25
2.0
25
100
0
100
36
16
12
36
1.85
56907867--56908261
200
2.0
200
93
1
675
31
20
17
31
1.95
56909548--56909594
21
2.2
21
88
0
67
25
38
10
25
1.88
56910553--56910593
6
7.0
6
88
5
57
0
19
0
80
0.71
56910563--56910596
8
4.0
9
88
11
54
0
20
0
79
0.73
56910563--56910596
17
2.0
17
94
0
59
0
20
0
79
0.73
56910607--56910668
7
8.6
7
79
13
56
11
0
8
80
0.90
56910607--56910677
8
9.5
8
83
13
82
11
0
8
80
0.91
56910612--56910678
9
7.7
9
85
11
79
10
0
8
80
0.90
56910600--56910658
7
8.6
7
82
15
54
11
1
8
77
1.05
56918229--56918261
17
2.0
16
94
5
57
72
6
9
12
1.26
56923543--56923579
15
2.5
15
95
0
65
45
0
2
51
1.15
56923606--56923654
25
1.9
26
91
4
82
42
0
2
55
1.11
56925518--56925611
46
2.0
46
100
0
188
31
12
27
27
1.93
56927314--56927358
23
2.0
23
82
8
56
40
31
6
22
1.80
56928095--56928139
23
2.0
23
82
8
56
40
31
6
22
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56928949--56929016
19
3.6
20
79
16
83
55
5
0
38
1.24
56928963--56929024
8
7.1
8
76
16
61
58
4
0
37
1.20
56929279--56929623
113
3.1
113
93
0
591
27
22
23
26
1.99
56939927--56939976
21
2.3
23
93
6
86
22
8
8
62
1.49
56943704--56943763
30
2.0
31
83
3
77
43
1
36
18
1.60
56954319--56954366
24
2.0
24
100
0
96
25
16
25
33
1.96
56954320--56954373
24
2.2
24
93
0
90
25
16
27
29
1.97
56954452--56954575
62
2.0
62
100
0
248
27
19
32
20
1.97
56961717--56961784
6
12.8
5
80
11
57
76
0
23
0
0.79
56961727--56961789
18
3.4
19
76
23
71
74
0
25
0
0.82
56961719--56961791
24
2.8
27
78
15
73
75
0
24
0
0.81
56961739--56961791
6
9.2
6
84
12
58
75
0
24
0
0.80
56961717--56961789
13
5.7
13
77
9
62
76
0
23
0
0.78
56963189--56964135
50
18.9
50
81
1
1065
32
21
19
26
1.97
56963192--56964135
100
9.4
100
90
0
1377
32
21
19
26
1.97
56967358--56967605
81
3.1
80
91
3
381
50
11
7
30
1.65
56967358--56967605
82
3.1
81
91
3
376
50
11
7
30
1.65
56968640--56968823
41
4.5
40
82
6
190
18
24
23
33
1.97
56970334--56970579
116
2.1
117
81
4
284
25
16
20
37
1.93
56973293--56973419
42
2.8
43
70
16
105
41
3
6
48
1.47
56973593--56973718
9
14.9
9
75
12
106
44
23
2
30
1.66
56973593--56973718
16
7.5
17
72
15
84
44
23
2
30
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56973594--56973718
25
4.9
25
84
2
124
44
23
2
29
1.66
56973593--56973719
34
3.8
34
74
14
104
44
22
2
30
1.66
56979177--56979245
21
3.3
21
83
0
75
36
18
42
2
1.66
56979705--56980018
43
7.4
42
83
6
366
25
22
21
30
1.98
56979705--56979991
85
3.4
84
85
5
366
25
22
21
30
1.99
56984101--56984133
5
6.6
5
100
0
66
63
0
18
18
1.31
56984133--56984157
3
8.3
3
100
0
50
36
0
0
64
0.94
56986739--56986771
11
3.0
11
91
8
50
48
0
6
45
1.27
56989139--56989187
22
2.3
20
82
6
53
53
2
2
42
1.24
56989464--56989498
18
2.0
18
94
5
63
54
0
0
45
0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222