genome.fa.s15.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  135  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43860749--43861023	131	2.1	130	81	6	322	25	22	21	29	1.99
43861351--43862056	44	16.5	44	73	8	377	27	20	18	33	1.96
43861351--43862056	87	8.2	87	69	9	369	27	20	18	33	1.96
43861256--43862056	44	18.7	42	71	9	363	28	20	18	33	1.96
43861253--43862056	212	3.8	212	90	2	1200	28	20	18	33	1.96
43879332--43879379	20	2.5	20	86	3	62	35	14	27	22	1.93
43882368--43882400	15	2.2	15	94	0	57	12	24	6	57	1.57
43891602--43891764	9	18.6	9	68	21	55	31	3	2	62	1.25
43891671--43891766	10	9.6	10	68	13	54	30	4	2	63	1.24
43891712--43891757	22	2.0	22	84	12	58	32	2	2	63	1.19
43894503--43894596	41	2.3	41	88	1	143	28	18	26	26	1.98
43898333--43898437	46	2.3	46	84	0	129	36	24	18	20	1.95
43908620--43908686	25	2.7	25	83	0	71	25	22	14	37	1.93
43910626--43910666	16	2.6	16	85	14	59	70	12	0	17	1.16
43910634--43910668	15	2.4	14	86	13	52	71	11	0	17	1.14
43911810--43911853	23	2.0	22	82	13	54	29	2	2	65	1.16
43911915--43911975	24	2.6	24	89	2	88	34	4	3	57	1.36
43911915--43911995	24	3.5	24	81	5	85	34	6	3	55	1.42
43913530--43913639	37	3.0	37	98	0	211	36	12	20	30	1.90
43914378--43914416	19	2.1	19	100	0	78	30	33	5	30	1.79
43914441--43914509	3	23.0	3	100	0	138	66	0	33	0	0.92
43915796--43915821	10	2.6	10	100	0	52	34	7	11	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43920458--43920526	27	2.6	27	80	0	84	27	23	14	34	1.94
43922988--43923043	22	2.7	21	74	17	53	37	3	3	55	1.35
43926264--43926334	37	1.9	37	94	0	124	38	32	15	14	1.87
43934351--43934393	22	2.0	22	86	9	61	46	16	0	37	1.47
43935552--43935591	13	3.0	14	82	17	50	40	7	0	52	1.30
43941004--43941037	16	2.1	17	88	5	52	67	2	0	29	1.05
43941226--43941262	18	2.2	18	85	9	51	45	10	2	40	1.53
43945079--43945134	29	2.0	28	85	3	76	48	3	3	44	1.37
43955767--43955820	23	2.5	20	78	21	56	35	22	0	42	1.54
43955857--43955944	44	2.0	45	93	2	151	32	23	15	27	1.95
43955953--43956135	51	3.6	50	78	3	188	31	26	18	24	1.97
43955951--43956135	101	1.8	102	85	3	266	31	26	17	23	1.97
43956885--43957797	455	2.0	455	95	0	1648	35	21	12	30	1.90
43958650--43958764	57	2.0	57	100	0	230	31	12	20	35	1.90
43960310--43960366	22	2.4	24	80	8	64	14	40	7	38	1.73
43967633--43967816	61	3.0	61	93	0	305	23	20	13	42	1.87
43978470--43978723	45	5.7	45	83	4	309	24	23	11	40	1.88
43978470--43978711	89	2.7	90	89	3	362	24	23	12	39	1.89
43979606--43979652	8	5.9	8	92	0	76	38	0	0	61	0.96
43982294--43982327	17	2.1	15	89	10	50	29	0	64	5	1.17
43985651--43985697	24	2.0	24	86	0	67	53	23	10	12	1.70
43990252--43990327	37	2.1	37	92	0	125	19	14	23	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43992093--43992196	41	2.6	41	82	1	120	34	23	17	25	1.96
43997175--43997220	22	2.1	22	84	8	58	54	17	0	28	1.43
44000142--44000193	25	2.0	26	82	10	63	42	1	5	50	1.37
44001818--44001894	36	2.2	35	86	6	104	37	2	6	53	1.41
44001882--44001934	20	2.9	18	78	18	56	39	1	3	54	1.29
44011816--44011863	14	3.1	15	79	14	53	60	6	2	31	1.33
44015251--44015284	17	2.0	17	100	0	68	58	5	17	17	1.57
44017785--44017824	6	6.5	6	82	5	53	20	0	2	77	0.88
44017790--44017829	19	2.1	19	95	0	71	25	0	5	70	1.08
44025581--44025674	9	10.4	9	85	0	125	43	21	8	26	1.81
44026989--44027040	26	2.0	26	100	0	104	42	3	19	34	1.69
44033771--44033813	22	2.0	22	81	9	52	44	2	0	53	1.13
44038603--44038646	20	2.2	20	87	0	61	0	52	0	47	1.00
44038604--44038649	24	1.9	24	90	0	74	0	52	0	47	1.00
44061961--44062051	42	2.2	42	85	0	119	47	14	23	15	1.82
44064249--44064287	19	2.1	19	100	0	78	41	5	5	48	1.47
44066596--44066652	21	2.7	21	97	0	105	14	28	17	40	1.88
44072724--44072787	21	3.0	21	86	0	83	17	21	15	45	1.85
44074378--44074424	22	2.1	23	92	4	78	44	19	0	36	1.51
44083527--44083634	44	2.4	44	87	3	144	29	23	13	33	1.93
44084585--44084657	5	14.6	5	76	20	64	54	4	1	39	1.28
44084586--44084628	19	2.3	19	92	8	70	55	0	2	41	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44084592--44084656	24	2.7	24	80	9	69	56	4	1	36	1.29
44087364--44087392	11	2.6	11	100	0	58	24	17	27	31	1.97
44087642--44087701	30	2.0	30	83	3	75	21	33	0	45	1.52
44089423--44089457	8	4.4	8	96	0	61	11	42	0	45	1.40
44091536--44091597	31	2.0	31	84	6	81	41	3	1	53	1.27
44091536--44091610	31	2.5	32	80	8	77	41	2	1	54	1.23
44091747--44091787	18	2.3	18	83	12	57	58	0	0	41	0.98
44091775--44091825	26	1.9	27	92	4	86	39	1	3	54	1.30
44091947--44091988	21	2.0	21	81	9	50	59	0	2	38	1.10
44092025--44092078	18	3.0	17	84	12	72	51	0	1	46	1.11
44094803--44094861	22	2.7	22	77	12	68	55	0	6	37	1.26
44094790--44094839	18	2.7	19	84	6	68	54	0	6	40	1.25
44098123--44098160	20	1.9	20	84	10	51	18	2	5	73	1.14
44106320--44106515	51	3.9	51	75	9	188	25	17	27	30	1.97
44106636--44106708	37	1.9	37	84	13	96	42	1	23	32	1.63
44111227--44111276	4	12.5	4	100	0	100	50	26	0	24	1.50
44115939--44116099	42	3.8	42	84	5	209	29	23	20	26	1.99
44115939--44116180	42	5.7	42	79	10	145	27	24	19	29	1.98
44116579--44116630	21	2.5	21	87	9	79	5	44	15	34	1.70
44119444--44119490	12	4.2	12	76	15	55	31	2	19	46	1.61
44119437--44119492	21	2.7	21	91	0	85	32	1	19	46	1.61
44119397--44119593	91	2.2	88	78	12	211	36	1	16	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44119610--44119646	9	4.1	9	96	0	65	35	2	21	40	1.68
44119638--44119713	39	1.9	40	94	2	136	39	9	15	35	1.80
44119645--44119709	22	3.2	21	64	28	50	41	10	15	32	1.81
44119709--44119823	9	12.6	9	76	14	76	29	0	21	48	1.50
44119711--44119817	18	5.8	18	76	16	103	30	0	20	48	1.50
44119705--44119823	27	4.7	27	79	14	153	30	0	21	47	1.51
44122753--44122800	7	7.0	7	78	4	53	29	45	0	25	1.53
44122753--44122806	27	2.0	27	85	0	72	31	46	0	22	1.52
44122758--44122796	20	2.0	20	89	0	60	28	48	0	23	1.51
44124484--44124668	40	4.7	40	78	7	182	24	21	27	27	1.99
44124565--44124687	40	3.1	40	84	5	117	24	21	29	24	1.99
44124537--44124691	79	2.0	79	81	7	181	25	20	27	26	1.99
44131946--44132130	79	2.3	81	84	7	236	24	22	27	25	2.00
44131947--44132130	40	4.6	40	83	9	216	24	22	27	25	2.00
44131947--44132163	79	2.7	79	81	7	201	25	22	27	24	2.00
44133641--44133722	7	11.7	7	74	10	51	34	47	1	17	1.55
44133656--44133738	15	5.7	15	70	8	64	33	44	0	21	1.53
44133638--44133736	35	2.8	35	83	4	119	35	44	1	19	1.57
44133660--44133741	21	3.8	22	71	12	71	37	41	0	20	1.53
44133731--44133817	41	2.2	41	85	4	115	47	19	5	27	1.72
44134390--44134726	114	2.9	115	77	4	340	28	21	17	32	1.96
44138393--44138417	12	2.1	12	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44138456--44138553	37	2.6	39	76	20	104	51	3	3	42	1.33
44145020--44145074	26	2.1	26	96	0	101	43	10	14	30	1.80
44145803--44145830	10	2.8	10	100	0	56	32	28	10	28	1.90
44147573--44147608	5	6.8	5	87	12	54	55	0	0	44	0.99
44147568--44147608	15	2.5	17	84	15	59	51	2	0	46	1.14
44153578--44153706	52	2.5	52	86	6	174	27	30	14	27	1.95
44159272--44159310	5	7.8	5	85	8	53	76	0	5	17	0.96
44159273--44159310	14	2.6	14	91	8	58	76	0	5	18	0.97
44160805--44160833	14	2.0	15	93	6	51	20	0	27	51	1.47
44170178--44170209	16	1.9	17	93	6	57	34	0	15	50	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222