genome.fa.s15.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  154  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49540946--49540985	18	2.3	17	83	8	53	42	10	2	45	1.51
49541080--49541151	27	2.7	27	81	14	87	66	1	12	19	1.31
49541054--49541323	70	3.8	69	74	19	232	62	0	10	25	1.32
49541100--49541163	27	2.4	27	82	10	78	64	1	15	18	1.38
49541193--49541323	68	1.9	69	83	10	171	64	0	6	28	1.25
49541280--49541323	21	2.2	20	88	12	63	68	0	4	27	1.09
49541311--49541380	17	4.1	17	75	5	70	57	0	17	25	1.40
49541733--49541771	18	2.1	18	85	4	51	69	0	7	23	1.14
49541760--49541860	5	18.0	5	72	17	58	51	0	18	29	1.47
49541736--49541860	30	4.2	30	75	18	86	54	0	16	29	1.42
49541762--49541831	12	6.0	12	74	12	56	50	0	18	31	1.48
49541762--49541832	35	2.1	33	82	10	81	50	0	18	30	1.47
49541785--49541860	28	2.7	27	86	8	91	50	0	19	30	1.48
49541895--49542002	18	5.6	19	76	16	98	59	1	8	30	1.38
49541882--49541997	21	5.7	20	77	17	100	58	1	8	31	1.38
49541957--49542025	17	4.1	17	75	24	67	57	0	10	31	1.32
49542049--49542124	5	14.6	5	77	13	73	63	2	17	17	1.43
49542048--49542124	22	3.6	22	75	15	81	62	2	16	18	1.44
49542049--49542124	11	7.3	10	74	14	73	63	2	17	17	1.43
49542049--49542141	41	2.3	40	83	12	118	63	2	18	16	1.41
49542499--49542542	23	1.9	23	81	9	54	65	2	6	25	1.28
49542546--49542623	23	3.4	22	75	16	70	53	0	16	29	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49542583--49542619	19	1.9	19	94	0	65	51	0	18	29	1.47
49542555--49542624	28	2.5	28	84	9	81	51	0	18	30	1.47
49542605--49542654	17	2.9	17	82	11	66	58	0	10	32	1.31
49542651--49542689	16	2.3	18	86	8	55	64	2	15	17	1.41
49545413--49545558	48	3.2	48	66	20	130	56	11	4	27	1.53
49545356--49545587	89	2.6	90	88	4	333	58	11	4	25	1.53
49546800--49546830	9	3.4	9	90	0	53	25	12	22	38	1.90
49547251--49547281	16	1.9	16	93	0	53	25	29	0	45	1.54
49547810--49547836	5	5.4	5	100	0	54	22	18	22	37	1.95
49548217--49548254	3	12.7	3	100	0	76	68	0	0	31	0.90
49557942--49558076	43	3.1	43	84	4	173	31	27	17	24	1.97
49558185--49558230	24	2.0	23	83	12	58	41	0	4	54	1.20
49558176--49558230	20	2.5	21	80	14	58	40	0	3	56	1.17
49560515--49560560	21	2.2	21	88	0	65	50	21	8	19	1.75
49566566--49566591	4	6.5	4	100	0	52	26	0	73	0	0.84
49567703--49567749	15	3.1	15	84	3	67	48	31	0	19	1.49
49567793--49567835	22	2.0	22	85	0	59	46	30	0	23	1.52
49568185--49568494	41	7.6	41	76	7	258	32	25	18	23	1.97
49568214--49568494	82	3.4	81	80	5	291	32	25	18	23	1.97
49568196--49568494	163	1.8	162	83	6	399	33	25	18	22	1.97
49577133--49577179	24	2.0	23	83	4	58	21	12	12	53	1.72
49583352--49583401	19	2.6	19	73	20	50	18	14	6	62	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49593257--49593332	6	12.2	6	73	13	55	17	2	6	73	1.16
49594172--49594211	21	1.9	21	89	0	62	12	15	10	62	1.54
49607768--49607825	22	2.6	23	73	13	57	32	3	24	39	1.72
49613384--49613432	20	2.5	20	83	6	64	44	12	0	42	1.41
49614681--49614765	25	3.3	27	80	8	88	28	2	3	65	1.21
49614735--49614776	22	2.0	22	85	4	59	28	4	2	64	1.26
49615247--49615297	27	1.9	26	84	4	66	23	7	1	66	1.28
49621357--49621432	36	2.1	36	90	0	116	27	23	22	26	1.99
49621393--49621768	169	2.2	169	90	0	599	28	18	26	27	1.98
49621622--49621906	147	1.9	147	87	1	419	29	18	25	25	1.98
49621898--49622020	44	2.8	44	88	2	167	29	19	24	26	1.98
49622070--49622233	57	2.9	56	83	5	206	33	20	20	26	1.97
49622727--49622798	24	3.0	24	93	0	126	15	19	30	34	1.93
49624173--49624212	21	2.0	21	85	5	55	30	5	2	62	1.29
49625707--49625756	24	2.1	24	88	0	73	36	4	8	52	1.50
49632086--49632132	20	2.3	21	81	3	60	51	23	2	23	1.59
49640030--49640056	6	4.5	6	100	0	54	85	0	0	14	0.61
49656180--49656862	342	2.0	342	92	0	1143	33	19	20	27	1.96
49660093--49660141	2	24.5	2	100	0	98	48	0	51	0	1.00
49662589--49662621	15	2.4	14	90	10	50	21	12	0	66	1.23
49663048--49663086	14	2.7	15	80	8	53	64	0	0	35	0.94
49663540--49663576	14	2.6	14	91	0	56	24	43	0	32	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49665044--49665085	22	2.0	21	90	4	66	45	0	40	14	1.45
49667277--49667335	24	2.4	25	85	2	75	28	5	6	59	1.45
49668312--49668388	37	2.1	37	95	0	136	40	14	15	29	1.87
49669838--49669914	23	3.2	23	68	10	73	45	1	9	44	1.43
49671551--49671576	12	2.2	12	100	0	52	38	0	19	42	1.51
49671552--49671802	129	1.9	129	89	1	387	26	11	21	39	1.88
49674278--49674766	161	3.0	163	90	2	786	25	16	19	38	1.92
49677831--49677856	11	2.4	11	100	0	52	65	0	19	15	1.27
49679238--49679377	25	5.6	25	76	3	138	34	19	16	30	1.94
49679718--49679979	129	2.0	129	91	2	420	27	14	19	38	1.90
49696021--49696249	40	5.8	40	83	2	282	34	17	34	13	1.89
49696089--49696233	20	7.3	20	67	10	91	35	17	34	12	1.88
49696021--49696249	79	2.9	80	85	3	275	34	17	34	13	1.89
49701867--49701980	40	2.9	39	84	3	138	21	28	15	34	1.94
49701887--49701999	40	2.8	39	80	11	122	19	29	16	34	1.94
49701986--49702070	20	4.2	20	71	5	73	14	35	17	32	1.90
49706917--49706971	21	2.8	20	71	15	51	34	7	7	50	1.58
49711922--49711968	24	2.1	23	84	11	62	14	46	2	36	1.57
49720706--49720779	25	3.0	25	80	9	80	24	21	17	36	1.95
49723727--49724060	97	3.5	94	82	10	381	33	20	23	22	1.97
49723728--49724008	144	2.0	143	86	4	395	32	21	24	21	1.98
49723727--49724055	47	6.8	48	81	9	366	33	20	24	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49727810--49727891	5	15.2	5	75	14	65	19	20	0	59	1.37
49727810--49727891	16	5.1	16	77	5	76	19	20	0	59	1.37
49727810--49727891	11	7.5	11	72	11	62	19	20	0	59	1.37
49727898--49727962	21	3.1	21	76	17	64	27	7	1	63	1.31
49727896--49727989	42	2.2	43	79	9	111	26	9	2	61	1.38
49731023--49731142	48	2.5	48	79	4	127	36	22	18	22	1.95
49731120--49731220	49	2.1	49	83	10	127	26	18	17	36	1.94
49737915--49737939	12	2.1	12	100	0	50	44	8	8	40	1.63
49737955--49737989	18	1.9	18	88	11	54	34	0	25	40	1.56
49741380--49741415	18	2.0	18	100	0	72	38	11	22	27	1.88
49741848--49742335	243	2.0	243	98	0	940	32	6	23	37	1.80
49756452--49756481	15	2.1	15	93	6	53	13	0	0	86	0.57
49759649--49759960	153	2.0	154	90	3	495	37	14	14	33	1.87
49762664--49762698	17	2.1	17	94	0	61	37	20	5	37	1.76
49765980--49766061	26	3.2	26	69	27	84	23	13	29	34	1.93
49765922--49766061	50	2.8	49	85	4	190	23	15	28	32	1.95
49766285--49766316	16	2.0	16	93	0	55	59	0	15	25	1.36
49771944--49772073	50	2.6	49	83	13	149	24	18	26	30	1.98
49771932--49772132	51	4.0	52	75	7	189	25	16	27	30	1.97
49772350--49772381	16	2.0	16	93	0	55	59	0	15	25	1.36
49783128--49783206	5	15.8	5	68	5	52	8	20	15	55	1.66
49791499--49791552	17	3.2	17	70	19	58	24	20	1	53	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49794045--49794143	42	2.4	42	78	10	112	21	31	21	26	1.98
49794086--49794208	54	2.3	54	82	4	140	20	29	24	26	1.99
49794654--49794678	12	2.1	12	100	0	50	48	0	24	28	1.52
49798288--49798363	20	3.8	19	71	10	62	30	23	31	14	1.94
49798274--49798373	40	2.5	40	72	18	100	31	22	32	15	1.94
49798374--49798439	20	3.3	20	65	23	57	28	18	33	19	1.95
49798367--49798512	40	3.7	40	90	0	220	30	17	30	20	1.96
49798353--49798533	80	2.3	81	81	2	222	29	18	32	19	1.96
49799887--49800077	53	3.8	52	70	17	136	39	22	20	17	1.92
49799938--49800114	42	4.0	41	70	18	138	36	24	22	17	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222