genome.fa.s15.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  145  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47003118--47003166	15	3.1	16	82	11	57	44	0	0	55	0.99
47004984--47005032	25	2.0	25	83	0	62	59	6	16	18	1.57
47010946--47010972	11	2.5	11	100	0	54	22	7	18	51	1.70
47012372--47012566	93	2.1	92	88	4	286	44	4	4	47	1.41
47012599--47012632	17	2.0	17	94	0	59	44	5	0	50	1.26
47012599--47012637	17	2.4	16	87	8	53	43	5	0	51	1.24
47012603--47012642	17	2.3	18	83	12	57	47	5	0	47	1.24
47012722--47012773	15	3.6	15	80	12	56	44	0	1	53	1.11
47012598--47012889	120	2.4	120	91	5	459	41	2	5	50	1.40
47012671--47012854	59	3.1	59	65	21	148	41	2	7	49	1.42
47012851--47012892	15	2.7	16	82	14	52	45	0	2	52	1.13
47012842--47012883	15	2.9	15	82	10	52	47	0	0	52	1.00
47012826--47013140	154	2.0	157	95	2	564	46	5	3	44	1.41
47012992--47013026	18	2.0	17	88	5	52	45	0	0	54	0.99
47013187--47013279	45	2.1	44	81	2	105	34	26	6	32	1.82
47013273--47013329	16	3.6	16	92	0	78	33	35	0	31	1.58
47015424--47015936	44	11.8	44	68	14	235	28	22	20	29	1.98
47015345--47016025	217	3.1	217	90	0	1056	28	22	20	29	1.98
47015914--47016115	45	4.5	44	74	17	177	26	24	20	28	1.99
47015909--47016115	89	2.3	89	90	1	344	26	25	20	28	1.99
47015345--47016190	434	1.9	431	82	6	1028	27	23	20	28	1.99
47028064--47028098	15	2.3	15	95	0	61	65	11	0	22	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47028546--47028624	31	2.5	31	75	15	83	64	5	0	30	1.15
47029512--47029544	14	2.3	15	94	5	59	75	12	6	6	1.16
47029511--47029545	15	2.3	16	85	14	56	77	11	5	5	1.12
47030421--47030496	39	1.9	39	91	0	125	56	18	3	21	1.57
47038922--47039239	175	1.8	173	87	2	476	30	15	28	25	1.96
47041936--47041994	22	2.7	22	82	7	66	38	22	5	33	1.76
47045281--47045320	19	2.2	19	86	8	57	55	17	5	22	1.61
47047990--47048295	135	2.3	135	87	3	447	33	15	9	42	1.79
47048189--47048295	54	2.0	54	96	0	196	30	16	9	42	1.80
47051129--47051158	5	5.8	5	92	7	51	80	0	0	20	0.72
47051129--47051162	11	3.2	11	87	8	52	79	0	0	20	0.73
47058976--47059241	86	3.1	87	84	3	358	30	16	16	36	1.91
47059752--47059823	27	2.6	28	75	2	74	52	9	15	22	1.71
47064727--47064755	2	14.5	2	100	0	58	51	48	0	0	1.00
47066575--47066607	13	2.3	15	90	10	52	51	24	6	18	1.68
47066705--47066748	5	8.4	5	85	9	61	77	4	0	18	0.94
47066705--47066748	11	4.2	10	85	8	61	77	4	0	18	0.94
47066708--47066748	16	2.6	16	92	0	64	78	4	0	17	0.93
47068702--47068762	23	2.7	24	82	7	65	57	0	1	40	1.08
47068713--47068750	20	1.9	20	89	10	60	60	0	0	39	0.97
47068717--47068760	20	2.1	21	83	4	54	63	0	2	34	1.07
47069628--47069696	16	4.2	16	96	3	129	24	0	37	37	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47069628--47069696	33	2.1	32	97	2	129	24	0	37	37	1.56
47069677--47069767	45	2.0	45	85	2	121	27	6	28	37	1.82
47069932--47069968	19	2.0	19	85	15	51	54	0	0	45	1.00
47070010--47070195	59	3.1	58	69	19	157	51	3	2	42	1.34
47069912--47070201	120	2.4	120	89	3	456	49	4	2	43	1.35
47072528--47072556	6	4.8	6	100	0	58	0	68	0	31	0.89
47076092--47076504	120	3.4	120	96	1	740	41	3	5	49	1.40
47076217--47076258	15	2.9	15	82	10	52	47	0	0	52	1.00
47076337--47076378	15	2.9	15	82	10	52	47	0	0	52	1.00
47076466--47076507	15	2.7	16	82	14	52	45	0	2	52	1.13
47076457--47076498	15	2.9	15	82	10	52	47	0	0	52	1.00
47076441--47076757	157	2.0	157	94	1	555	47	5	3	43	1.41
47076786--47076894	44	2.6	40	74	17	112	33	27	6	32	1.82
47076802--47076889	44	2.0	45	86	2	124	34	27	6	31	1.83
47076880--47076948	16	4.2	16	96	3	129	37	37	0	24	1.56
47076880--47076948	33	2.1	32	97	2	129	37	37	0	24	1.56
47081207--47081244	14	2.7	14	87	0	58	34	7	18	39	1.80
47081228--47081267	20	2.0	20	95	0	71	27	10	15	47	1.77
47081213--47081279	34	1.9	35	90	3	109	31	8	16	43	1.79
47081354--47081483	42	3.4	42	64	27	124	32	3	5	58	1.39
47081354--47081495	40	3.7	40	68	19	122	31	4	6	57	1.43
47081353--47081495	72	2.0	71	98	1	277	31	4	6	57	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47081568--47081630	34	1.9	32	93	6	108	41	4	9	44	1.58
47083836--47083860	13	1.9	13	100	0	50	40	16	28	16	1.89
47092701--47092824	38	3.3	38	97	0	230	20	11	37	30	1.88
47093982--47094094	58	1.9	58	91	3	183	38	2	8	49	1.48
47101772--47101820	25	1.9	27	84	12	68	22	18	8	51	1.72
47104863--47104974	44	2.5	44	89	0	170	26	21	26	25	1.99
47104946--47105474	128	4.1	128	89	0	792	29	20	24	25	1.99
47107286--47107320	17	2.1	16	89	5	52	40	2	0	57	1.14
47107374--47107404	5	6.2	5	92	0	53	19	3	0	77	0.90
47110001--47110049	25	2.0	25	87	0	71	38	4	10	46	1.57
47114590--47114731	44	3.1	44	72	18	126	27	16	21	33	1.95
47114743--47115066	40	7.8	40	69	13	195	25	21	23	30	1.99
47114690--47115244	127	4.4	127	90	0	842	25	20	22	30	1.98
47115318--47115767	50	8.9	50	65	1	164	26	22	21	28	1.99
47115248--47115767	100	5.2	100	88	2	684	26	22	21	29	1.99
47116747--47116809	13	5.0	12	81	12	65	1	19	1	77	0.93
47117267--47117305	10	4.0	10	83	3	53	12	7	2	76	1.09
47132875--47132986	42	2.7	42	92	2	190	33	14	28	24	1.94
47134190--47135839	132	12.5	132	89	2	2341	28	18	24	28	1.98
47134792--47135236	44	10.1	44	62	14	103	28	18	23	29	1.98
47135463--47135783	44	7.3	44	66	8	168	30	18	23	27	1.97
47135419--47135744	44	7.4	43	65	11	133	30	18	24	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47137348--47137404	3	19.3	3	96	3	107	31	0	0	68	0.90
47143352--47143393	15	2.7	16	82	14	52	52	2	0	45	1.13
47143361--47143402	15	2.9	15	82	10	52	52	0	0	47	1.00
47143355--47143766	120	3.4	120	96	1	747	50	5	2	41	1.38
47143471--47143522	15	3.6	15	80	12	56	53	1	0	44	1.11
47143591--47143642	15	3.6	15	80	12	56	53	1	0	44	1.11
47143807--47143867	28	2.2	28	85	5	81	50	3	0	45	1.17
47143782--47143989	91	2.3	91	92	2	337	47	4	3	45	1.39
47143814--47143957	47	3.1	46	66	20	120	50	4	2	43	1.33
47143763--47143949	47	4.1	43	69	16	119	48	3	2	45	1.32
47143832--47143970	47	3.0	47	68	17	137	50	4	2	43	1.34
47149702--47149787	23	3.7	23	75	17	97	50	15	17	17	1.79
47154233--47154287	18	3.1	18	75	10	60	74	5	16	3	1.15
47156707--47156771	33	2.0	33	84	0	85	18	21	33	26	1.96
47158884--47158925	18	2.3	18	95	0	75	9	14	11	64	1.50
47166860--47166898	19	2.1	19	95	0	69	35	12	15	35	1.86
47168213--47168252	21	1.9	21	85	10	55	22	45	0	32	1.53
47180823--47180848	6	4.3	6	100	0	52	84	0	0	15	0.62
47182195--47182246	23	2.3	22	75	21	54	9	23	1	65	1.32
47184641--47184666	6	4.3	6	100	0	52	84	0	0	15	0.62
47192136--47192180	15	3.0	15	80	0	54	44	2	15	37	1.59
47194645--47194733	41	2.2	42	89	4	137	26	21	35	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47194669--47194733	20	3.2	20	70	8	60	27	23	33	15	1.95
47198124--47198153	14	2.1	14	93	0	51	46	33	3	16	1.64
47199371--47199442	29	2.4	30	81	6	85	33	18	8	40	1.80
47199967--47200023	19	3.0	18	80	10	60	70	17	8	3	1.28
47200139--47200228	13	7.2	12	72	17	60	74	0	23	2	0.93
47200139--47200192	18	2.9	18	76	13	56	72	0	27	0	0.85
47200557--47200635	11	6.8	12	71	12	58	79	3	15	1	0.93
47200584--47200635	19	2.7	18	82	14	59	82	0	17	0	0.66
47200557--47200634	33	2.6	32	80	15	87	80	3	14	1	0.91
47200590--47200628	15	2.6	16	88	8	55	84	0	15	0	0.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222