genome.fa.s15.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  85  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26413264--26413414	20	7.6	20	71	4	117	19	27	19	33	1.96
26413467--26413514	19	2.5	19	86	3	69	10	22	22	43	1.84
26413702--26413834	60	2.2	60	81	2	160	18	29	20	31	1.96
26413689--26413840	20	7.6	20	71	2	117	20	28	19	31	1.97
26417307--26417347	21	2.0	21	90	0	64	31	2	4	60	1.30
26425203--26425252	17	2.9	17	87	0	82	24	24	6	46	1.75
26428771--26428820	17	2.9	17	87	0	82	24	28	6	42	1.78
26431999--26432049	6	8.5	6	77	16	52	15	1	15	66	1.34
26431999--26432055	18	3.2	17	78	16	53	15	1	14	68	1.29
26436317--26436563	50	4.8	50	78	4	210	28	21	26	23	1.99
26440018--26440213	51	3.9	51	78	4	191	24	15	27	32	1.95
26440128--26440208	26	3.2	26	62	28	64	23	13	28	34	1.93
26440210--26440304	45	2.1	45	86	0	136	29	17	21	31	1.96
26445897--26445938	21	2.1	20	86	8	59	9	16	4	69	1.33
26447724--26447781	22	2.5	24	72	13	59	62	5	5	27	1.38
26447766--26447794	12	2.4	12	100	0	58	58	0	6	34	1.25
26455029--26455069	22	1.9	21	85	5	55	24	4	12	58	1.53
26459348--26459441	20	4.7	19	75	5	71	10	29	20	39	1.86
26460530--26460590	25	2.4	25	94	5	104	29	19	21	29	1.98
26466556--26466618	29	2.2	29	88	8	94	33	19	12	34	1.89
26466650--26466677	13	2.2	13	100	0	56	21	25	7	46	1.76
26467834--26467878	21	2.1	22	83	4	56	57	0	4	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26470029--26470084	3	18.7	3	100	0	112	0	33	0	66	0.92
26471787--26471845	30	2.0	29	83	12	75	50	11	5	32	1.61
26472152--26472191	15	2.7	15	96	0	71	22	27	5	45	1.73
26477512--26477735	79	2.8	78	82	9	265	25	27	21	25	2.00
26477512--26477735	40	5.7	40	85	8	266	25	27	21	25	2.00
26485570--26485793	79	2.8	78	83	9	274	25	27	22	25	2.00
26485570--26485793	40	5.7	40	86	8	275	25	27	22	25	2.00
26492642--26492682	17	2.3	17	83	8	55	51	0	2	46	1.14
26492739--26492771	16	2.1	16	100	0	66	42	6	0	51	1.26
26499712--26499767	29	1.9	29	88	0	85	62	1	1	33	1.16
26499710--26499776	29	2.3	29	82	7	75	62	2	1	32	1.19
26499968--26500021	19	2.8	20	81	13	60	25	9	0	64	1.23
26500035--26500142	32	3.5	30	73	13	94	27	4	2	64	1.27
26500077--26500133	22	2.6	22	76	13	64	26	3	3	66	1.24
26500110--26500208	9	10.8	9	73	21	55	33	1	0	65	0.99
26500109--26500165	10	5.8	10	74	17	57	29	1	0	68	1.00
26500109--26500171	29	2.2	28	85	2	81	28	1	0	69	0.97
26500027--26500153	63	2.0	63	82	11	154	30	3	2	62	1.25
26500156--26500180	7	3.6	7	100	0	50	16	0	0	84	0.63
26500118--26500215	45	2.1	48	83	12	125	32	1	1	65	1.06
26500318--26500548	90	2.6	87	79	12	222	34	8	18	39	1.80
26500972--26501009	1	38.0	1	89	0	58	0	5	0	94	0.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26500966--26501009	10	4.5	10	94	2	72	0	9	0	90	0.44
26503801--26503855	2	27.5	2	100	0	110	50	0	49	0	1.00
26505471--26505522	16	3.2	16	91	0	77	30	0	34	34	1.58
26505503--26505593	45	2.0	44	87	2	128	31	5	28	34	1.80
26505757--26505791	18	2.0	17	88	5	52	54	0	0	45	0.99
26505772--26506091	61	5.3	61	68	17	238	49	6	2	42	1.40
26505856--26505907	15	3.6	15	80	12	56	53	1	0	44	1.11
26505743--26506152	120	3.4	120	95	0	723	49	4	2	43	1.37
26506191--26506273	39	2.2	39	95	2	150	59	12	6	22	1.55
26510420--26510458	18	2.2	18	86	9	53	46	7	17	28	1.76
26510698--26510747	24	2.1	24	88	0	73	38	6	6	50	1.52
26511167--26511270	54	1.9	54	82	3	129	22	30	24	23	1.99
26513927--26513992	26	2.5	26	87	0	87	30	24	21	24	1.99
26518378--26518435	24	2.5	22	73	18	55	37	0	0	62	0.96
26527788--26527820	11	3.0	11	100	0	66	27	9	18	45	1.79
26529083--26529122	19	2.1	19	95	0	71	35	30	20	15	1.93
26532041--26532079	19	2.0	20	90	9	64	71	0	0	28	0.86
26532187--26532241	21	2.6	21	77	11	67	67	1	0	30	1.01
26532485--26532562	21	3.8	21	70	16	65	33	1	7	57	1.35
26532718--26532751	15	2.3	15	90	10	52	35	0	20	44	1.52
26545748--26545827	28	2.9	27	81	7	81	21	20	13	45	1.85
26545776--26545840	28	2.3	28	91	0	103	18	23	16	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26545776--26545849	28	2.6	28	81	8	96	18	22	17	40	1.91
26546391--26546441	24	2.1	24	85	7	68	47	23	15	13	1.82
26549148--26549308	61	2.6	61	84	1	198	22	23	19	34	1.97
26549959--26550091	28	4.8	28	83	0	149	21	21	18	39	1.93
26550548--26550640	42	2.2	43	86	3	134	45	24	15	15	1.84
26550569--26550635	22	3.2	20	77	12	62	49	20	13	16	1.79
26555937--26555987	18	2.7	19	82	11	61	33	17	7	41	1.79
26559072--26559286	50	4.4	50	84	6	260	18	32	20	28	1.96
26562180--26562231	23	2.2	24	82	3	70	15	13	15	55	1.69
26563016--26563111	48	2.0	49	97	2	185	48	14	4	32	1.63
26569363--26569459	33	3.1	31	71	14	90	28	17	7	46	1.75
26569359--26569478	64	1.9	62	83	6	152	29	19	9	42	1.82
26569846--26569905	31	1.9	31	83	6	77	36	18	1	43	1.60
26571787--26571871	20	4.3	20	77	3	82	37	20	29	12	1.90
26571815--26571851	19	1.9	19	88	0	56	40	18	27	13	1.88
26577892--26577997	20	5.3	20	70	10	83	42	19	25	12	1.86
26577968--26578007	20	2.0	20	90	9	64	45	17	27	10	1.80
26587567--26587624	27	2.1	27	96	0	107	25	17	17	39	1.91
26591631--26591676	24	1.9	24	81	0	56	34	4	4	56	1.39
26594002--26594044	21	2.0	21	86	0	59	44	16	4	34	1.68
26594915--26594961	20	2.3	20	82	7	60	46	17	14	21	1.83
26595874--26595931	29	2.0	29	100	0	116	44	24	10	20	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26623599--26623643	21	2.1	21	84	8	56	40	51	2	6	1.41
26623996--26624055	27	2.2	27	84	0	75	21	20	23	35	1.96
26624009--26624411	27	15.0	27	83	0	394	19	17	20	42	1.89
26625907--26625973	27	2.5	27	85	0	98	17	17	19	44	1.87
26627682--26627723	21	2.0	21	90	9	68	26	9	4	59	1.48
26633296--26633335	21	1.9	21	84	0	53	42	2	2	52	1.28
26634038--26634072	8	4.1	8	86	13	52	71	2	0	25	1.00
26634631--26634671	16	2.4	18	88	11	61	65	19	4	9	1.40
26640170--26640257	46	1.9	46	83	4	115	40	17	18	23	1.90
26640435--26640481	22	2.1	22	84	0	58	46	17	17	19	1.84
26640473--26640643	32	5.4	31	82	10	202	39	21	19	20	1.93
26640473--26640642	64	2.7	65	87	7	233	38	21	19	20	1.93
26640681--26640746	27	2.5	26	85	9	80	33	19	24	22	1.97
26640815--26640896	24	3.4	24	82	0	110	47	23	6	23	1.73
26640948--26641435	27	18.2	26	80	8	405	19	15	20	44	1.87
26642172--26642232	4	15.2	4	77	13	63	22	1	3	72	1.09
26642157--26642235	24	3.5	21	80	17	81	21	1	6	70	1.16
26642164--26642230	24	3.1	20	84	14	89	20	1	5	71	1.15
26642173--26642251	24	3.2	25	77	16	76	18	3	5	72	1.19
26642266--26642330	3	22.7	3	77	12	57	27	6	0	66	1.15
26643946--26644001	6	9.3	6	80	7	60	14	1	7	76	1.07
26644943--26644976	18	1.9	18	94	5	61	73	2	5	17	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26651166--26651261	42	2.3	41	82	8	122	22	25	33	18	1.97
26655800--26655846	23	2.0	23	100	0	94	36	17	8	38	1.80
26656881--26656957	25	3.1	25	87	5	104	25	27	20	25	1.99
26665905--26665972	30	2.2	31	84	2	84	26	17	7	48	1.73
26666325--26666358	17	2.0	17	88	0	50	38	8	0	52	1.33
26672737--26672798	32	1.9	32	93	6	108	25	24	16	33	1.95
26678188--26678304	45	2.6	44	86	5	155	22	15	25	36	1.93
26678188--26678342	44	3.5	43	84	6	152	21	14	27	35	1.93
26680040--26680095	28	2.0	28	96	0	103	25	7	23	44	1.78
26682315--26682348	3	11.3	3	87	0	50	2	26	0	70	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222