genome.fa.s15.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  144  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46679116--46679317	105	1.9	105	85	2	280	32	14	24	27	1.95
46679108--46679335	105	2.2	104	82	4	278	37	14	22	25	1.92
46682712--46682747	16	2.2	16	100	0	72	41	5	22	30	1.76
46692473--46692500	14	2.0	14	100	0	56	64	0	7	28	1.20
46701778--46701821	19	2.3	19	88	7	63	59	27	2	11	1.44
46709620--46709663	23	1.9	23	86	9	63	40	0	2	56	1.11
46709757--46710101	180	1.9	180	84	5	457	30	10	9	49	1.69
46710479--46710538	21	3.0	21	83	11	65	36	0	5	58	1.20
46711666--46711777	54	2.1	54	82	0	134	22	25	16	35	1.95
46711666--46711777	27	4.1	27	83	0	116	22	25	16	35	1.95
46716753--46716798	24	1.9	24	95	0	83	39	17	8	34	1.80
46725108--46725166	24	2.4	24	82	2	73	42	1	37	18	1.61
46730844--46731001	64	2.4	64	84	7	192	34	8	15	40	1.79
46731040--46731156	41	2.8	42	75	10	116	23	19	24	32	1.98
46732978--46733049	33	2.1	35	89	5	112	44	20	6	27	1.77
46744323--46744369	21	2.2	22	92	3	78	21	38	19	21	1.94
46749456--46749491	19	1.9	19	88	5	56	22	0	22	55	1.44
46754752--46754818	19	3.6	18	69	13	55	43	1	1	53	1.19
46754781--46754826	19	2.3	20	82	14	60	52	2	2	43	1.25
46756862--46756910	12	4.2	12	76	5	55	40	8	0	51	1.32
46757299--46757346	22	2.1	23	88	3	71	37	0	2	60	1.09
46764929--46764996	34	2.0	34	82	5	84	32	22	26	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46770910--46770966	24	2.3	24	81	3	69	56	5	8	29	1.52
46771022--46771066	25	1.9	23	82	13	56	66	2	8	22	1.30
46777275--46777381	51	2.1	52	85	1	144	32	19	7	40	1.80
46778830--46778868	19	2.1	19	85	0	51	43	10	2	43	1.52
46797902--46798124	79	2.8	78	82	9	265	24	27	22	25	2.00
46797902--46798124	39	5.7	40	86	8	266	24	27	22	25	2.00
46805853--46806075	79	2.8	77	81	9	245	25	27	21	25	2.00
46805853--46806075	39	5.6	39	84	8	242	25	27	21	25	2.00
46809376--46809482	51	2.1	52	85	1	144	32	19	7	40	1.80
46810931--46810969	19	2.1	19	85	0	51	43	10	2	43	1.52
46814086--46814111	11	2.4	11	100	0	52	46	0	19	34	1.50
46840540--46840574	15	2.3	15	100	0	70	20	42	5	31	1.75
46847943--46848014	30	2.4	30	88	0	108	25	25	22	27	2.00
46857499--46857605	15	7.3	15	71	12	60	23	16	32	27	1.96
46857535--46857574	14	2.7	14	88	7	53	27	20	30	22	1.98
46857445--46857605	30	5.4	29	73	15	107	22	14	34	27	1.94
46859047--46859071	12	2.1	12	100	0	50	32	8	16	44	1.76
46860825--46860988	14	11.5	14	73	7	107	20	16	29	33	1.95
46860826--46860976	43	3.5	42	76	8	144	21	17	28	32	1.96
46860829--46861012	85	2.2	85	86	1	244	21	17	27	32	1.96
46882321--46882949	44	14.3	45	75	7	526	26	16	26	30	1.97
46882321--46882948	132	4.8	132	97	0	1143	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46882321--46883020	88	8.0	87	75	8	528	26	16	26	30	1.97
46882956--46883345	46	8.7	46	65	9	167	26	20	23	29	1.99
46882956--46883300	134	2.6	134	96	0	627	25	21	23	29	1.99
46888877--46889216	82	4.1	82	87	0	457	46	13	12	27	1.79
46904605--46904978	163	2.3	163	84	2	464	47	12	12	27	1.78
46904605--46904979	82	4.6	82	84	2	450	46	12	12	27	1.78
46918443--46918631	82	2.3	81	81	5	218	47	12	13	26	1.79
46918984--46919321	82	4.1	82	89	0	478	45	14	13	26	1.82
46919591--46919662	34	2.1	34	92	0	117	12	52	16	18	1.74
46920633--46920660	3	9.3	3	100	0	56	32	0	0	67	0.91
46920752--46920807	10	6.0	10	72	16	57	44	7	1	46	1.41
46920716--46920794	28	2.6	30	86	9	99	40	6	0	53	1.26
46920756--46920818	18	3.5	17	75	14	56	42	9	1	46	1.46
46920810--46920924	43	2.7	42	86	9	160	37	6	0	54	1.33
46924322--46924364	17	2.4	19	84	7	54	76	0	16	6	0.99
46924322--46924364	18	2.3	19	84	11	54	76	0	16	6	0.99
46925808--46925979	51	3.4	51	87	0	227	30	16	26	27	1.97
46925859--46926367	123	4.0	123	74	9	405	31	15	24	27	1.96
46925961--46926000	21	1.9	21	89	0	62	40	7	30	22	1.81
46925910--46926049	72	1.9	72	82	2	174	33	14	26	25	1.94
46925712--46926132	174	2.4	174	85	1	540	30	17	23	28	1.97
46926029--46926450	138	3.2	137	73	11	399	31	17	22	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46926253--46926394	51	2.8	51	76	0	158	27	16	26	29	1.97
46925886--46926450	261	2.2	261	87	1	785	30	17	24	28	1.97
46926356--46926429	36	2.1	36	89	0	112	25	21	21	31	1.98
46926466--46926915	44	9.8	45	68	12	173	30	20	21	27	1.98
46926488--46926574	45	2.0	44	81	6	104	29	26	22	20	1.99
46926398--46926743	143	2.4	143	89	1	525	32	19	20	27	1.97
46926609--46926995	181	2.1	181	89	1	580	29	18	21	29	1.97
46927577--46927644	10	7.0	10	71	18	63	45	7	1	45	1.40
46927584--46927655	12	6.3	12	72	18	57	44	8	1	45	1.42
46927577--46927640	2	33.0	2	73	6	51	45	6	1	46	1.37
46931651--46932233	21	26.6	22	82	5	607	42	29	1	26	1.64
46931651--46932233	43	13.3	43	81	5	625	42	29	1	26	1.64
46931696--46931793	27	3.8	27	85	9	134	40	32	4	22	1.73
46931984--46932013	15	2.0	15	93	0	51	43	26	0	30	1.55
46932327--46932494	37	4.4	38	65	20	109	42	8	6	41	1.62
46932333--46932511	53	3.2	53	67	17	155	43	8	6	42	1.60
46932233--46932511	114	2.4	114	98	0	531	42	8	7	41	1.63
46935521--46936055	127	4.3	126	85	5	702	30	22	16	30	1.96
46937101--46937148	25	1.9	25	100	0	96	20	22	18	37	1.94
46937859--46937917	30	1.9	31	89	3	93	47	1	20	30	1.60
46941390--46941499	41	2.7	41	81	1	141	20	29	17	32	1.96
46947210--46947398	61	3.2	61	61	19	146	42	9	8	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46947161--46947494	116	2.9	116	98	0	650	43	8	8	38	1.68
46947499--46947542	22	2.1	21	91	8	72	31	0	25	43	1.55
46947491--46947917	23	16.8	23	76	19	333	28	0	24	46	1.56
46947525--46948037	29	19.2	29	75	19	430	27	0	25	46	1.55
46947525--46947917	52	7.6	52	74	15	289	28	0	24	47	1.55
46947491--46948117	103	6.0	104	79	14	541	27	0	26	45	1.56
46947807--46947836	15	2.0	15	93	0	51	20	0	30	50	1.49
46947910--46947939	15	2.0	15	93	0	51	20	0	30	50	1.49
46947931--46948117	36	5.2	36	80	15	194	25	0	31	43	1.55
46947961--46948118	35	4.2	38	82	12	179	24	0	32	43	1.55
46948078--46948137	23	2.6	23	78	0	75	23	0	30	46	1.52
46948143--46948228	43	2.0	45	90	4	140	50	12	0	37	1.41
46949327--46949351	7	3.6	7	100	0	50	60	12	0	28	1.32
46950529--46950585	22	2.5	22	88	2	87	40	0	33	26	1.56
46957410--46957461	25	2.1	25	92	7	88	38	9	26	25	1.86
46960103--46960133	16	1.9	16	93	0	53	22	0	3	74	0.96
46976038--46976090	16	3.3	15	79	12	52	56	1	0	41	1.10
46976048--46976083	17	2.2	16	90	5	54	61	0	0	38	0.96
46976806--46976854	20	2.5	20	96	0	89	63	0	16	20	1.31
46979154--46979314	87	1.9	86	88	1	241	36	21	14	27	1.92
46983069--46983111	11	3.8	11	77	17	52	30	2	4	62	1.28
46983072--46983115	23	1.9	23	90	0	70	31	2	6	59	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46985900--46985948	22	2.2	23	79	17	59	42	2	4	51	1.32
46985918--46985959	22	2.0	22	90	4	68	33	0	4	61	1.17
46985931--46985993	34	2.0	30	84	12	81	33	0	3	63	1.10
46994372--46994626	50	5.1	50	69	3	183	31	19	22	27	1.98
46994319--46994576	50	5.2	49	67	3	167	32	20	21	26	1.97
46994254--46994659	99	4.1	100	88	1	557	31	21	22	25	1.98
46994403--46994583	49	3.7	48	71	5	155	33	20	19	27	1.96
46994670--46994964	44	6.8	43	74	11	210	29	18	23	28	1.98
46996661--46996741	27	3.0	27	77	19	89	33	0	3	62	1.12
47000593--47000622	15	2.0	15	93	0	51	46	23	13	16	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222