genome.fa.s15.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  194  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61987652--61987680	13	2.1	14	93	6	51	72	13	0	13	1.13
61989194--61989232	17	2.6	14	78	21	51	33	2	7	56	1.41
61989200--61989238	16	2.4	17	95	4	71	41	2	5	51	1.38
61995995--61996049	21	2.6	21	85	5	76	34	9	27	29	1.87
61996994--61997025	16	2.0	16	100	0	64	50	18	12	18	1.78
61998910--61998952	18	2.4	18	85	11	61	41	18	0	39	1.51
62005891--62005932	17	2.5	17	100	0	84	14	47	28	9	1.75
62015159--62015347	51	3.7	51	82	6	213	24	15	26	32	1.95
62017696--62017838	39	3.7	39	91	0	223	47	19	2	30	1.64
62034534--62034590	28	2.0	30	86	6	82	36	14	24	24	1.92
62037655--62037695	3	13.7	3	94	0	73	31	0	2	65	1.05
62041305--62041347	22	2.0	22	95	0	77	44	11	4	39	1.62
62044551--62045107	274	2.0	274	90	0	871	26	15	28	29	1.96
62052796--62052860	30	2.2	30	89	8	98	40	6	26	27	1.80
62057790--62057815	10	2.6	10	100	0	52	42	7	30	19	1.79
62058490--62058532	22	2.0	22	90	0	68	46	9	4	39	1.57
62061688--62061734	3	15.7	3	100	0	94	34	0	0	65	0.93
62063639--62063674	18	2.0	18	94	0	63	58	22	0	19	1.40
62065323--62065508	51	3.7	49	81	5	203	24	18	27	30	1.98
62065326--62065510	101	1.8	101	86	5	266	24	18	27	30	1.98
62065326--62065518	102	1.9	101	85	5	264	24	18	27	29	1.98
62065514--62065598	46	1.9	43	85	7	116	23	16	27	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62065736--62065767	16	2.0	16	93	0	55	59	0	15	25	1.36
62078235--62078288	28	2.0	28	85	7	76	59	0	5	35	1.21
62079451--62079519	28	2.5	27	83	4	75	30	1	18	49	1.57
62079548--62079615	29	2.4	28	87	2	100	30	7	17	44	1.76
62089660--62089794	40	3.4	40	87	0	207	45	25	16	12	1.83
62093390--62093418	14	2.1	14	100	0	58	20	0	37	41	1.53
62093381--62093423	21	2.0	21	81	0	50	25	2	32	39	1.69
62094505--62094612	56	1.9	56	100	0	216	40	3	25	30	1.73
62096005--62096065	27	2.3	27	91	0	95	19	13	27	39	1.89
62096016--62096084	27	2.6	27	93	2	113	15	15	23	44	1.85
62096043--62096126	41	2.0	42	86	2	116	16	16	21	45	1.86
62096070--62096099	15	2.1	15	93	6	53	20	30	10	40	1.85
62096016--62096153	68	2.0	69	88	1	206	16	18	22	42	1.89
62096084--62096270	27	6.9	27	83	0	230	18	18	22	40	1.91
62096084--62096270	54	3.5	54	87	0	266	18	18	22	40	1.91
62096086--62096274	81	2.3	81	88	1	281	17	17	23	40	1.91
62101574--62101616	22	2.0	22	95	0	77	9	20	27	41	1.83
62101688--62101933	43	5.7	43	87	0	296	26	28	17	27	1.98
62106484--62106524	21	2.0	21	95	0	73	29	43	0	26	1.55
62106722--62106775	22	2.3	24	84	9	76	62	0	0	37	0.95
62106805--62106867	22	2.9	22	85	4	83	38	42	0	19	1.51
62106880--62106920	14	2.9	15	82	10	59	39	31	0	29	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62106883--62106929	15	3.3	15	82	8	53	42	29	0	27	1.56
62107154--62107269	41	2.8	40	90	3	178	28	31	20	19	1.97
62107305--62107383	39	2.0	39	90	2	122	24	20	16	39	1.92
62107305--62107442	40	3.5	40	75	5	136	22	20	18	39	1.93
62108870--62108915	18	2.8	17	78	15	53	0	26	41	32	1.56
62108870--62108903	17	1.9	18	88	5	52	0	26	38	35	1.57
62109194--62109252	25	2.3	24	83	11	57	59	6	6	27	1.48
62110048--62110254	54	3.8	53	73	8	152	35	16	22	25	1.95
62110165--62110274	57	1.9	56	83	5	141	33	18	21	26	1.96
62131895--62131984	37	2.4	36	80	15	94	63	4	2	30	1.26
62132295--62132343	20	2.5	20	100	0	98	24	28	10	36	1.88
62132295--62132352	20	2.9	20	92	5	82	27	27	8	36	1.86
62132334--62132404	31	2.3	32	85	9	103	45	23	7	23	1.78
62138053--62138102	18	2.8	18	76	11	57	42	2	16	40	1.59
62138358--62138397	18	2.1	18	86	9	53	25	0	10	65	1.24
62138397--62138427	11	2.8	11	90	0	53	67	0	0	32	0.91
62139844--62139920	31	2.5	31	78	4	75	37	15	10	36	1.82
62146241--62146277	18	2.1	18	100	0	74	16	10	13	59	1.61
62147161--62147189	5	5.8	5	100	0	58	20	0	0	79	0.74
62162547--62162611	30	2.2	30	91	0	103	36	20	3	40	1.68
62169948--62169994	16	2.8	16	78	18	51	63	0	2	34	1.06
62170666--62171360	45	15.4	45	88	0	933	30	16	24	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62171463--62171572	44	2.5	44	87	0	148	30	22	22	24	1.99
62172114--62172165	21	2.6	19	88	11	86	36	11	15	36	1.84
62172695--62172753	32	1.9	31	86	6	84	35	11	6	45	1.67
62172693--62172761	30	2.2	31	82	5	86	33	11	5	49	1.63
62172886--62172929	23	2.0	22	90	4	70	34	6	2	56	1.38
62172867--62172925	27	2.3	25	83	16	68	32	8	1	57	1.39
62172979--62173006	4	7.0	4	100	0	56	25	0	0	75	0.81
62173116--62173145	3	10.0	3	100	0	60	33	0	0	66	0.92
62177108--62177158	26	2.0	26	92	0	84	25	21	17	35	1.95
62187874--62187989	29	4.0	29	87	2	144	15	28	32	23	1.95
62187968--62188083	60	1.9	59	84	5	153	21	21	33	23	1.97
62189089--62189122	17	1.9	18	88	5	52	2	5	32	58	1.37
62190870--62190903	16	2.1	16	88	0	50	55	0	0	44	0.99
62190881--62190930	24	2.0	25	85	11	68	58	0	0	42	0.98
62193037--62193064	5	5.6	5	100	0	56	21	0	17	60	1.36
62195767--62195793	10	2.7	10	100	0	54	22	0	37	40	1.54
62197206--62197320	38	3.0	38	80	0	131	34	16	14	33	1.90
62197579--62197619	20	2.0	21	85	4	57	31	19	17	31	1.95
62201041--62201107	34	1.9	35	87	3	100	31	8	14	44	1.76
62202131--62202196	22	3.0	21	84	8	71	66	1	0	31	1.01
62202143--62202188	14	3.3	14	82	14	51	71	0	0	28	0.86
62202187--62202211	6	4.2	6	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62203090--62203153	30	2.1	31	97	2	121	40	6	26	26	1.79
62203088--62203138	15	3.3	16	72	10	61	43	5	25	25	1.77
62203097--62203150	15	3.7	15	73	11	58	42	7	22	27	1.80
62203100--62203150	14	3.5	14	70	19	50	43	5	23	27	1.77
62213305--62213350	24	1.9	23	83	16	58	45	4	4	45	1.43
62214952--62215001	26	1.9	26	87	0	73	34	6	28	32	1.81
62222957--62223523	126	4.5	125	85	2	742	30	16	22	30	1.96
62222957--62223523	251	2.3	249	88	2	816	30	16	22	30	1.96
62227428--62227474	10	4.8	10	78	5	51	65	0	2	31	1.04
62227472--62227569	51	1.9	51	85	4	135	46	3	23	26	1.66
62227531--62227605	11	6.7	11	70	23	59	42	1	29	26	1.63
62227531--62227605	22	3.4	22	81	17	84	42	1	29	26	1.63
62227531--62227605	33	2.2	34	81	9	91	42	1	29	26	1.63
62228682--62228737	21	2.7	21	91	0	94	25	8	37	28	1.86
62228951--62229006	15	4.0	15	73	17	57	55	0	0	44	0.99
62228961--62229023	26	2.5	25	82	10	83	58	1	0	39	1.07
62228956--62229154	59	3.3	59	72	19	205	53	3	1	41	1.27
62228934--62229173	120	2.0	120	96	0	444	51	4	2	42	1.33
62240104--62240128	7	3.6	7	100	0	50	48	36	16	0	1.46
62242026--62242226	52	4.0	51	83	9	243	58	4	11	25	1.52
62242093--62242174	26	3.2	26	66	10	69	62	6	8	23	1.46
62242020--62242236	101	2.1	104	84	11	295	59	4	10	25	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62242253--62242317	31	2.0	33	82	11	82	61	3	4	30	1.31
62243763--62244263	44	11.0	44	77	9	416	29	20	17	32	1.96
62243919--62244261	178	1.9	179	86	4	483	30	21	16	30	1.96
62257868--62257919	19	2.7	20	85	11	65	40	7	21	30	1.81
62276066--62276101	10	3.7	10	88	3	56	75	0	0	25	0.81
62282162--62282200	5	8.4	5	88	11	57	79	0	20	0	0.73
62282162--62282196	9	3.9	9	89	10	54	80	0	20	0	0.72
62284617--62284708	48	1.9	48	88	0	139	44	6	23	25	1.77
62292923--62293077	46	3.6	46	76	19	197	36	12	21	29	1.90
62292961--62293099	36	3.6	36	75	20	145	36	13	18	30	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222