genome.fa.s15.2.7.7.80.10.50.1000.219.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  219  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69117923--69117984	21	3.2	21	60	21	53	51	9	20	17	1.73
69117916--69117990	37	2.0	37	100	0	150	46	10	21	21	1.81
69122644--69122695	25	2.1	25	81	0	59	61	11	0	26	1.30
69125936--69126000	30	2.2	30	83	2	78	46	15	6	32	1.70
69127421--69127798	188	2.0	188	94	0	666	35	12	14	37	1.84
69135522--69135584	24	2.7	23	80	7	63	55	3	1	39	1.25
69143915--69143964	22	2.3	21	86	6	73	44	4	4	48	1.40
69147774--69147815	16	2.6	16	82	10	59	54	21	7	16	1.65
69149228--69149358	42	3.0	43	70	16	119	30	25	22	22	1.99
69149455--69150363	88	10.3	89	65	11	280	29	18	23	28	1.98
69149340--69150501	132	8.8	132	92	1	1839	29	18	24	28	1.98
69150493--69150678	44	4.2	44	86	0	228	32	12	25	29	1.93
69150685--69150930	124	2.0	125	88	2	370	27	19	23	29	1.99
69152372--69152421	15	3.5	15	80	17	54	26	6	4	64	1.35
69154124--69154165	16	2.6	16	82	10	59	54	21	7	16	1.65
69156631--69156671	6	6.8	6	91	0	55	31	9	17	41	1.82
69158264--69158315	21	2.5	20	84	9	68	30	5	28	34	1.81
69159597--69159637	19	2.2	19	100	0	82	34	4	12	48	1.62
69162196--69162244	24	2.0	24	92	0	80	24	8	6	61	1.47
69175758--69175782	11	2.3	11	100	0	50	44	16	16	24	1.86
69179850--69179877	2	14.0	2	100	0	56	50	50	0	0	1.00
69179879--69179941	4	15.8	4	100	0	126	50	25	0	23	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69183098--69183133	3	12.0	3	100	0	72	66	0	0	33	0.92
69183686--69183712	5	5.4	5	100	0	54	18	0	0	81	0.69
69186081--69186111	16	1.9	16	93	0	53	70	6	6	16	1.29
69187822--69187848	13	2.1	13	100	0	54	66	7	0	25	1.17
69188747--69188782	18	1.9	18	88	5	54	27	0	2	69	1.02
69193140--69193184	16	2.9	16	80	3	56	55	15	2	26	1.52
69194087--69194134	20	2.5	20	86	3	71	54	6	0	39	1.26
69200106--69200143	11	3.3	12	89	10	62	47	0	52	0	1.00
69200108--69200151	22	2.0	22	86	8	63	43	0	56	0	0.99
69208431--69208490	27	2.3	26	75	16	61	48	3	5	43	1.41
69209724--69209751	4	7.0	4	100	0	56	25	0	25	50	1.50
69209892--69209932	4	10.2	4	94	0	73	26	0	24	48	1.51
69209983--69210024	4	10.5	4	84	0	57	21	4	28	45	1.72
69210401--69210443	4	10.8	4	100	0	86	51	25	0	23	1.49
69217889--69217922	15	2.3	15	90	10	52	0	17	0	82	0.67
69226177--69226220	17	2.6	18	82	10	56	29	0	4	65	1.12
69240676--69240759	41	2.0	41	90	0	132	50	9	1	39	1.43
69244467--69244544	38	2.1	38	100	0	156	33	25	7	33	1.84
69260484--69260516	10	3.3	10	95	0	57	42	27	0	30	1.56
69283366--69283568	103	2.0	103	98	0	388	43	19	17	19	1.88
69289961--69290029	32	2.2	31	82	7	77	42	8	15	33	1.78
69294177--69294207	16	2.0	16	93	6	55	54	12	12	19	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69297441--69297479	7	5.4	7	96	3	69	15	0	25	58	1.37
69297441--69297485	14	3.2	14	90	6	56	15	2	22	60	1.46
69297441--69297485	21	2.1	21	88	8	65	15	2	22	60	1.46
69300357--69300387	6	5.2	6	100	0	62	51	16	0	32	1.44
69318104--69318166	33	2.0	31	81	12	74	28	14	3	53	1.56
69318427--69318457	14	2.2	14	94	0	53	45	0	0	54	0.99
69319410--69319478	28	2.4	28	81	13	77	43	1	4	50	1.30
69319540--69319601	31	2.0	31	84	6	81	51	3	6	38	1.44
69321486--69321521	17	2.1	17	89	0	54	41	11	22	25	1.86
69322353--69322391	19	2.0	20	90	5	62	74	0	5	20	1.01
69322696--69322742	3	15.7	3	86	0	67	6	29	0	63	1.19
69323289--69323327	21	1.9	21	89	5	62	17	12	10	58	1.61
69334416--69334462	19	2.7	17	81	12	60	74	2	10	12	1.16
69347136--69347200	21	3.2	21	73	18	66	6	49	10	33	1.63
69357492--69357543	21	2.5	21	83	0	59	55	3	0	40	1.18
69357492--69357554	27	2.4	26	86	7	83	53	3	0	42	1.16
69358358--69358405	5	9.6	5	95	0	87	60	2	0	37	1.09
69363533--69363570	20	2.0	20	89	5	60	50	2	0	47	1.15
69369219--69369737	257	2.0	257	92	0	867	33	13	15	37	1.87
69377976--69378034	30	2.0	31	90	6	95	42	0	37	20	1.52
69395262--69395337	27	2.8	27	87	0	116	18	21	36	23	1.95
69395354--69395394	19	2.2	19	95	0	73	31	0	17	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69395603--69395650	19	2.6	19	93	6	82	39	0	12	47	1.41
69395354--69395859	260	1.9	260	97	0	949	45	9	4	40	1.58
69395818--69395874	27	2.1	27	90	0	87	49	14	1	35	1.53
69395915--69396001	22	3.7	22	82	14	120	32	1	13	52	1.48
69395910--69396009	49	2.0	49	94	0	173	33	1	13	53	1.46
69395991--69396062	8	8.4	8	71	14	54	36	1	15	47	1.54
69396961--69397130	85	2.0	85	98	0	331	33	17	13	35	1.89
69404291--69404351	29	2.1	29	100	0	122	44	13	18	24	1.85
69406695--69406724	14	2.1	14	93	0	51	76	0	0	23	0.78
69415065--69415122	30	2.0	29	82	3	71	29	3	18	48	1.65
69419048--69419077	14	2.2	13	94	5	51	33	0	0	66	0.92
69429566--69429647	31	2.6	31	80	3	103	26	12	13	47	1.78
69431440--69431478	17	2.3	18	86	8	55	61	5	5	28	1.39
69440334--69440374	21	2.0	21	90	0	64	51	2	2	43	1.28
69440362--69440410	21	2.3	21	79	6	55	40	2	6	51	1.38
69448018--69448154	69	2.0	69	91	2	222	33	16	16	33	1.91
69453273--69453318	3	15.3	3	100	0	92	32	0	0	67	0.91
69454018--69454120	31	3.3	30	73	17	86	39	13	4	41	1.66
69467766--69467816	23	2.2	23	86	6	68	64	5	0	29	1.17
69471017--69471051	18	1.9	18	88	0	52	28	5	42	22	1.76
69477355--69477380	2	13.0	2	100	0	52	50	0	0	50	1.00
69482128--69482187	29	2.0	30	84	9	79	43	5	23	28	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69482525--69482708	50	3.7	50	88	5	264	25	23	30	20	1.98
69484290--69484625	185	1.8	186	94	0	602	31	15	28	24	1.95
69509050--69509235	73	2.5	73	99	0	363	40	24	6	27	1.80
69509236--69509264	3	9.7	3	100	0	58	68	0	0	31	0.89
69517294--69517391	42	2.3	42	89	0	142	20	25	15	38	1.92
69530982--69531012	4	7.8	4	100	0	62	77	0	0	22	0.77
69532367--69532418	23	2.3	22	75	21	54	9	23	1	65	1.32
69537298--69537329	7	4.6	7	96	0	55	56	25	18	0	1.42
69539059--69539221	83	2.0	83	96	0	299	44	12	11	31	1.78
69550298--69550357	17	3.4	17	72	17	59	36	3	1	58	1.25
69552412--69552447	9	4.1	9	89	3	56	52	0	0	47	1.00
69552407--69552463	26	2.2	25	78	9	60	56	1	1	40	1.20
69552538--69552573	9	4.0	9	85	0	54	55	30	2	11	1.49
69552869--69552898	3	10.0	3	92	0	51	3	30	0	66	1.07
69555922--69555975	20	2.8	19	80	11	56	38	1	5	53	1.35
69563098--69563147	25	2.0	25	88	7	75	24	32	18	26	1.97
69574137--69574161	13	1.9	13	100	0	50	0	16	0	84	0.63
69582675--69582940	104	2.5	105	93	1	446	18	21	30	30	1.97
69590886--69590933	11	4.1	11	79	12	51	68	2	2	27	1.11
69590886--69590925	12	3.2	12	82	6	53	72	2	0	25	0.97
69591017--69591103	29	3.0	29	74	17	90	35	3	0	60	1.13
69592427--69592470	16	2.8	16	83	13	63	56	27	0	15	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69592427--69592476	16	3.1	16	75	16	50	58	24	0	18	1.40
69600027--69600128	44	2.3	44	87	0	141	36	12	8	42	1.74
69629595--69629668	23	3.2	23	80	1	76	50	21	8	20	1.74
69629664--69629711	24	2.0	23	92	4	78	68	14	0	16	1.21
69634625--69634972	52	6.9	52	85	7	468	34	14	22	28	1.93
69634677--69634983	98	3.1	98	91	1	438	35	14	22	28	1.93
69634611--69634972	150	2.4	144	92	5	580	34	14	22	28	1.93
69634947--69635129	37	5.0	37	95	1	307	37	16	21	24	1.94
69639446--69639496	25	2.0	25	100	0	102	19	19	0	60	1.36
69650176--69650217	4	9.8	4	85	14	57	28	0	23	47	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222