genome.fa.s15.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  110  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35088834--35088886	26	2.0	28	92	7	92	22	13	0	64	1.28
35088923--35088976	11	4.8	11	90	4	81	18	0	7	74	1.05
35088923--35088976	12	4.8	12	82	11	69	18	0	7	74	1.05
35088923--35088976	23	2.4	22	90	3	81	18	0	7	74	1.05
35089294--35089387	46	2.0	46	91	4	154	35	21	18	25	1.95
35095425--35095651	45	5.2	45	89	6	349	38	15	21	25	1.92
35098427--35098618	40	4.8	40	80	0	213	26	27	21	24	1.99
35098398--35098618	80	2.8	79	87	2	300	27	27	21	24	1.99
35106470--35106681	40	5.3	40	79	2	239	27	26	21	24	1.99
35106462--35106681	80	2.8	79	88	1	298	27	26	20	25	1.99
35114527--35114574	19	2.5	20	86	10	64	4	18	2	75	1.07
35119131--35119178	20	2.4	20	67	0	51	33	18	27	20	1.96
35121600--35121624	12	2.1	12	100	0	50	44	16	8	32	1.76
35121617--35122862	557	2.2	557	98	0	2397	21	17	17	42	1.89
35124473--35124657	40	4.6	39	82	6	203	24	22	27	25	2.00
35124473--35124657	79	2.3	81	83	7	227	24	22	27	25	2.00
35124474--35124690	79	2.7	78	80	11	201	26	21	27	24	1.99
35140004--35140038	13	2.7	13	90	0	52	45	0	11	42	1.40
35140261--35140324	23	2.8	23	90	4	94	23	10	20	45	1.82
35154785--35154829	20	2.2	20	85	14	58	28	4	13	53	1.59
35159769--35159834	33	2.0	33	82	8	80	31	15	24	28	1.95
35162813--35162851	18	2.2	18	95	0	69	30	25	5	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35166171--35166207	15	2.5	15	90	0	56	2	21	0	75	0.92
35170427--35170649	79	2.8	78	82	9	265	24	27	22	25	2.00
35170427--35170649	39	5.7	40	86	8	266	24	27	22	25	2.00
35178574--35178796	39	5.7	40	84	8	257	25	21	27	25	2.00
35178574--35178796	79	2.8	81	82	11	266	25	21	27	25	2.00
35178574--35178829	79	3.3	79	81	10	208	26	21	27	24	1.99
35180707--35180929	79	2.8	78	80	11	249	25	27	21	25	2.00
35180707--35180929	39	5.7	40	85	8	257	25	27	21	25	2.00
35183634--35183685	27	1.9	27	84	0	68	61	1	28	7	1.34
35191529--35191674	40	3.7	40	81	10	149	24	25	22	27	2.00
35199653--35199677	13	1.9	13	100	0	50	0	12	0	88	0.53
35203907--35203978	21	3.3	21	72	16	56	68	2	23	5	1.24
35204012--35204078	33	1.9	33	82	8	80	46	10	31	11	1.75
35206766--35206868	36	2.9	36	85	2	136	43	14	27	14	1.84
35207425--35207477	27	2.0	27	85	7	72	28	7	13	50	1.68
35216762--35216793	16	2.0	16	100	0	64	12	12	25	50	1.75
35216980--35217127	72	2.0	73	83	3	183	25	16	28	29	1.97
35219259--35219318	18	3.2	18	78	7	66	73	3	16	6	1.18
35221572--35221719	72	2.0	73	84	3	192	25	16	29	29	1.97
35227064--35227118	21	2.6	22	80	11	62	10	21	0	67	1.21
35235698--35235737	18	2.2	18	86	4	53	12	27	0	60	1.33
35236801--35236849	13	3.8	13	86	7	73	28	12	0	59	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35236808--35236849	14	3.1	14	93	6	77	30	11	0	57	1.35
35236884--35236915	12	2.6	12	95	5	55	12	3	6	78	1.06
35241175--35241342	40	4.2	40	86	0	203	25	27	21	25	1.99
35241176--35241395	80	2.8	79	81	3	217	25	27	21	25	1.99
35241176--35241395	40	5.5	40	78	12	132	25	27	21	25	1.99
35241327--35241404	40	1.9	41	82	10	97	26	28	21	23	1.99
35249042--35249206	39	4.3	39	84	6	185	27	29	21	22	1.99
35255649--35255826	27	6.6	27	85	3	214	26	14	28	30	1.95
35255650--35255805	82	1.9	81	89	3	242	26	14	28	30	1.95
35255646--35255826	82	2.2	81	84	2	238	27	14	27	30	1.95
35264141--35264244	27	3.9	27	78	5	122	42	9	23	25	1.84
35276929--35276964	15	2.4	15	90	0	54	33	8	16	41	1.78
35277429--35277468	12	3.3	13	82	10	50	72	0	15	12	1.12
35277496--35277552	27	2.2	26	81	6	62	59	1	26	12	1.43
35279532--35279582	20	2.5	20	84	9	59	29	3	11	54	1.54
35281778--35281833	14	4.2	14	77	13	73	28	16	17	37	1.91
35287488--35287551	20	3.2	20	84	4	67	32	15	29	21	1.95
35290047--35290071	12	2.1	12	100	0	50	44	16	8	32	1.76
35290854--35290926	27	2.7	27	80	4	76	67	1	24	6	1.23
35297165--35297216	27	1.9	27	84	7	70	7	21	5	65	1.40
35308764--35308831	29	2.3	29	100	0	136	29	27	19	23	1.98
35309185--35309231	20	2.3	20	85	7	60	29	8	34	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35326178--35326210	14	2.2	16	89	10	52	69	3	18	9	1.28
35351495--35351552	10	5.7	10	76	11	64	29	27	13	29	1.94
35351495--35351555	20	3.0	20	83	9	79	27	26	13	32	1.93
35353208--35353249	16	2.5	18	85	14	63	69	4	14	11	1.34
35355512--35355572	25	2.4	26	94	2	106	75	8	1	14	1.11
35355512--35355572	13	4.8	13	91	4	97	75	8	1	14	1.11
35355612--35355650	16	2.4	16	95	0	69	66	5	7	20	1.36
35373573--35373635	29	2.3	27	78	13	65	6	15	4	73	1.21
35373616--35373681	11	5.7	11	75	19	55	18	6	4	71	1.24
35382554--35382597	11	4.0	11	100	0	88	72	9	0	18	1.10
35403967--35404229	40	6.6	40	88	3	316	26	27	20	24	1.99
35404161--35404238	40	1.9	41	82	10	97	26	28	21	23	1.99
35408127--35408177	24	2.1	24	96	0	93	13	19	27	39	1.90
35416795--35416979	79	2.3	82	82	7	220	25	27	22	24	2.00
35416776--35416979	40	5.1	40	80	8	220	25	27	22	25	2.00
35424141--35424324	40	4.6	40	78	10	198	25	27	22	25	2.00
35424141--35424325	79	2.3	82	83	7	229	25	27	22	24	2.00
35431479--35431519	14	2.7	15	85	7	57	21	2	2	73	1.07
35434433--35434495	21	3.0	21	85	2	72	30	6	33	30	1.82
35434443--35434500	22	2.6	22	86	5	73	31	5	32	31	1.80
35438075--35438121	20	2.3	20	81	0	58	23	12	34	29	1.92
35439791--35439897	48	2.2	49	85	11	141	14	23	1	59	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35440922--35441004	29	2.9	27	79	16	87	8	15	4	71	1.28
35442445--35442491	20	2.3	20	81	0	58	23	12	34	29	1.92
35448717--35448834	55	2.1	55	83	6	150	25	22	13	38	1.91
35449458--35449512	20	2.8	20	88	0	83	29	16	29	25	1.97
35451640--35451718	29	2.7	30	68	18	76	31	10	13	44	1.78
35453033--35453073	11	3.6	11	93	6	73	78	7	0	14	0.96
35453033--35453076	12	3.8	12	96	3	81	75	6	0	18	1.02
35453113--35453151	13	2.8	14	84	11	53	58	5	20	15	1.55
35454075--35454119	18	2.4	18	81	3	54	75	6	13	4	1.15
35455913--35455991	29	2.7	30	68	18	76	31	10	13	44	1.78
35458742--35458771	12	2.5	12	88	0	51	80	0	0	20	0.72
35465432--35465638	47	4.4	47	98	0	396	30	7	30	30	1.85
35465757--35465835	37	2.1	37	83	4	97	25	16	30	27	1.97
35467704--35467806	43	2.4	43	98	0	197	22	14	35	27	1.93
35467788--35467861	29	2.6	29	86	4	96	25	14	32	27	1.95
35468172--35468394	40	5.6	40	82	2	236	24	23	28	23	2.00
35468570--35468620	25	2.0	25	85	7	68	29	7	31	31	1.86
35471867--35472073	47	4.4	47	96	0	378	30	7	30	30	1.85
35472192--35472270	37	2.1	37	88	4	115	24	18	31	25	1.98
35478295--35478472	27	6.6	27	83	3	205	26	15	28	29	1.96
35478296--35478451	82	1.9	81	88	3	233	26	15	28	29	1.96
35478292--35478472	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35482261--35482361	52	1.9	52	93	0	175	24	17	23	33	1.96
35486097--35486134	10	3.8	10	83	13	51	26	15	28	28	1.96
35495770--35495806	18	2.1	18	94	0	65	37	16	24	21	1.93
35500179--35500235	13	4.6	13	91	8	93	78	7	0	14	0.94
35500181--35500237	23	2.4	24	97	2	107	75	7	0	17	1.02
35500180--35500235	12	4.7	12	93	6	96	78	7	0	14	0.95
35512236--35512281	21	2.1	22	84	4	58	67	0	23	8	1.18
35514378--35514440	21	3.0	21	88	2	90	30	3	33	33	1.74
35526064--35526233	40	4.3	40	85	1	207	23	21	30	24	1.99
35526086--35526268	79	2.3	80	80	1	199	25	21	28	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222