genome.fa.s15.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  155  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49799832--49800210	95	4.0	95	89	2	492	37	23	21	18	1.94
49800045--49800197	42	3.4	42	66	21	112	32	24	22	20	1.98
49801098--49801210	52	2.2	53	88	1	174	30	32	18	18	1.95
49801271--49801340	27	2.6	27	90	0	104	28	35	15	20	1.93
49804945--49805151	27	7.6	27	89	3	297	26	14	28	30	1.95
49804945--49805151	55	3.8	55	94	0	342	26	14	28	30	1.95
49818843--49818886	20	2.2	20	91	0	70	43	18	4	34	1.70
49827487--49827512	13	2.0	13	100	0	52	30	15	15	38	1.88
49841155--49841232	29	2.7	28	80	11	95	25	14	30	29	1.94
49841185--49841512	174	1.9	174	98	0	638	30	14	24	31	1.94
49861806--49861861	22	2.4	22	79	8	58	12	0	39	48	1.41
49862986--49863034	21	2.3	20	80	10	53	30	4	2	63	1.24
49863018--49863050	13	2.4	14	90	5	50	30	3	0	66	1.06
49866303--49866362	14	4.3	14	72	6	59	16	1	5	76	1.04
49877645--49877670	4	6.5	4	100	0	52	26	0	0	73	0.84
49883521--49884075	47	11.6	47	93	1	858	28	29	8	33	1.86
49883521--49884075	143	3.9	141	92	2	858	28	29	8	33	1.86
49888971--49889022	23	2.3	23	89	0	77	51	13	1	32	1.52
49894762--49894962	43	4.7	43	83	4	244	26	31	16	24	1.97
49898528--49898585	28	2.1	28	86	0	80	43	44	0	12	1.41
49898750--49898801	21	2.5	20	75	12	50	36	40	0	23	1.55
49898760--49898794	14	2.5	14	85	0	52	28	45	0	25	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49898827--49898859	15	2.3	15	89	5	50	36	30	0	33	1.58
49899265--49899421	41	3.9	41	84	3	201	29	29	21	19	1.97
49900501--49900546	23	2.0	23	95	0	83	26	23	17	32	1.97
49900504--49900553	23	2.2	23	88	0	73	26	22	20	32	1.98
49902382--49902411	15	1.9	16	93	6	53	33	0	0	66	0.92
49910014--49910125	56	2.0	56	100	0	224	32	28	12	26	1.93
49911473--49911586	53	2.2	53	88	3	167	35	14	1	48	1.54
49911897--49911937	17	2.4	18	80	19	52	41	4	0	53	1.22
49916376--49916844	76	6.3	75	77	6	391	21	19	16	42	1.89
49916463--49916593	65	2.0	65	81	0	154	19	19	19	41	1.91
49916390--49916808	140	2.9	140	81	5	390	21	19	16	41	1.90
49918730--49918754	12	2.1	12	100	0	50	44	0	8	48	1.32
49918888--49918968	39	2.2	36	80	6	90	24	23	16	35	1.94
49920415--49920685	140	1.9	138	87	1	398	38	7	9	44	1.65
49925332--49925374	22	2.0	22	95	0	77	39	6	16	37	1.75
49936961--49937032	34	2.1	34	100	0	144	43	16	8	31	1.78
49942654--49942755	30	3.4	30	82	2	107	27	21	10	40	1.86
49942683--49942901	30	7.4	29	77	11	155	22	24	13	39	1.90
49942652--49942901	59	4.2	59	71	12	183	23	24	12	39	1.89
49942771--49942844	29	2.5	30	84	2	96	17	28	9	44	1.80
49943689--49943718	16	1.9	15	93	6	51	40	13	0	46	1.43
49944035--49944073	20	2.0	20	100	0	78	25	20	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49955281--49955398	40	3.0	40	81	5	139	22	25	17	34	1.96
49967459--49967498	18	2.2	18	90	0	62	45	0	37	17	1.49
49973214--49973577	174	2.1	173	95	2	667	29	14	25	30	1.95
49973415--49973688	145	1.9	145	99	0	539	29	15	24	30	1.95
49981460--49981536	29	2.7	28	86	10	111	25	14	31	28	1.95
49994649--49995008	172	2.1	171	94	3	643	29	14	25	30	1.95
50002904--50002981	29	2.7	28	84	11	104	25	15	30	28	1.96
50002934--50003295	174	2.1	174	98	0	706	29	14	25	30	1.95
50003133--50003406	145	1.9	145	99	0	539	29	15	24	30	1.95
50005991--50006054	23	3.0	21	86	10	94	23	32	0	43	1.54
50007173--50007201	7	4.1	7	100	0	58	27	0	13	58	1.36
50007820--50007861	18	2.3	18	87	0	57	19	28	7	45	1.76
50008285--50008379	34	3.0	32	81	14	101	45	4	5	45	1.45
50008373--50008410	17	2.2	17	90	0	58	39	5	0	55	1.23
50008344--50008526	55	3.2	56	69	20	146	40	4	6	47	1.51
50011545--50011837	126	2.3	125	88	2	426	27	20	19	33	1.96
50011870--50012173	96	3.2	96	88	3	398	40	19	3	36	1.68
50012182--50012250	20	3.4	20	80	9	77	52	39	0	8	1.33
50012188--50012238	7	7.4	7	84	8	61	56	39	0	3	1.18
50012277--50012373	40	2.4	41	80	10	103	22	26	25	24	2.00
50029381--50029558	40	4.5	40	82	6	202	25	26	21	26	2.00
50029381--50029558	79	2.2	81	81	7	204	25	26	21	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50036602--50036819	79	2.8	81	79	11	229	24	26	22	26	2.00
50036635--50036819	40	4.7	40	82	7	225	24	27	22	24	2.00
50038729--50038771	20	2.2	20	100	0	86	27	13	25	32	1.94
50043017--50043306	50	5.7	50	80	7	293	21	27	23	27	1.99
50043066--50043300	99	2.3	104	86	6	311	21	27	24	26	1.99
50052050--50052083	8	4.5	8	85	14	54	38	26	0	35	1.57
50052050--50052083	14	2.3	14	90	10	50	38	26	0	35	1.57
50058009--50058048	8	5.2	8	82	11	57	12	0	25	62	1.30
50060094--50060298	90	2.3	89	87	2	275	45	4	3	46	1.41
50060214--50060274	28	2.2	28	85	5	81	45	1	3	49	1.28
50060445--50060491	15	3.3	15	82	11	55	44	0	2	53	1.12
50060315--50060726	120	3.4	120	95	1	729	42	1	5	49	1.38
50060559--50060610	15	3.6	15	80	12	56	44	0	1	53	1.11
50060688--50060732	16	2.8	16	83	10	56	48	0	2	48	1.13
50060859--50060896	16	2.4	16	86	0	58	28	34	2	34	1.71
50063375--50063452	25	3.2	25	80	5	79	30	16	26	25	1.97
50071805--50071925	63	1.9	63	91	0	197	39	20	4	34	1.74
50088227--50088312	40	2.2	40	85	4	111	15	27	18	38	1.91
50091241--50091278	19	2.0	19	85	10	51	23	36	0	39	1.55
50094051--50094125	3	25.3	3	83	2	98	62	1	4	32	1.22
50096978--50097017	14	2.9	15	82	14	50	35	5	12	47	1.63
50098504--50098561	8	7.1	8	75	9	55	15	3	1	79	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50110630--50110710	42	1.9	42	87	5	119	32	14	29	23	1.95
50110933--50110958	13	2.0	13	100	0	52	23	7	0	69	1.14
50111770--50112364	45	13.1	45	85	1	776	30	16	21	30	1.95
50114005--50114051	3	15.7	3	86	0	67	34	6	0	59	1.23
50114005--50114051	12	3.9	12	91	0	76	34	6	0	59	1.23
50114066--50114101	19	1.9	19	94	5	65	27	5	5	61	1.41
50150326--50150412	40	2.2	39	78	10	88	24	45	13	16	1.83
50153429--50153490	27	2.3	27	85	0	79	24	19	12	43	1.86
50153447--50153567	54	2.2	54	85	4	154	24	21	14	39	1.90
50153449--50153567	27	4.4	27	83	0	139	24	21	14	39	1.91
50154974--50155027	25	2.2	25	93	0	90	16	48	12	22	1.80
50154978--50155033	25	2.4	22	78	16	67	16	48	12	23	1.80
50157295--50157350	16	3.6	16	87	2	87	37	12	14	35	1.84
50157325--50157371	23	2.0	23	91	0	76	38	14	10	36	1.81
50166335--50166387	19	3.0	17	78	10	61	32	9	18	39	1.83
50173482--50173603	50	2.4	50	80	2	127	29	16	21	32	1.95
50180531--50180646	24	4.8	24	85	0	142	26	7	21	43	1.79
50180732--50180791	27	2.2	27	85	11	79	15	25	25	35	1.94
50180828--50180966	32	4.3	32	82	0	161	23	21	17	37	1.94
50180812--50180961	64	2.3	64	86	0	201	22	21	18	37	1.94
50182084--50182463	40	9.5	40	84	0	474	23	29	16	31	1.96
50182185--50182323	20	6.9	19	63	9	62	21	28	15	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50183503--50183563	27	2.3	27	82	0	68	19	16	26	37	1.93
50183517--50183845	27	12.3	27	81	7	300	24	15	16	44	1.85
50183517--50183845	53	6.2	53	80	8	337	24	15	16	44	1.85
50184765--50184801	17	2.2	16	90	4	56	75	0	21	2	0.92
50186135--50186223	42	2.1	42	85	6	119	25	26	28	19	1.99
50186833--50186869	17	2.1	18	90	5	58	13	8	0	78	0.96
50197458--50197688	48	4.8	48	91	0	345	28	20	27	22	1.99
50197458--50197743	48	5.9	48	87	2	313	29	20	26	23	1.99
50197463--50197732	96	2.8	96	86	1	353	28	20	27	23	1.99
50197458--50197727	144	1.9	144	83	0	351	28	20	27	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222