genome.fa.s15.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  149  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48047104--48047340	40	5.9	40	86	0	312	16	29	16	37	1.91
48049072--48049153	22	3.5	22	72	18	67	30	17	29	23	1.97
48061197--48061285	25	3.6	25	81	3	99	32	22	17	26	1.97
48067764--48067802	10	4.1	9	86	6	51	61	2	0	35	1.10
48085426--48085458	13	2.6	13	95	4	59	39	48	0	12	1.40
48085464--48085547	39	2.4	33	83	15	98	53	26	2	17	1.56
48085444--48085557	38	3.0	37	92	6	192	50	27	2	19	1.60
48085986--48086084	38	2.6	38	85	1	108	31	18	26	24	1.97
48086000--48086165	38	4.5	38	81	8	128	35	16	24	24	1.95
48086036--48086536	35	13.9	35	79	6	376	38	16	20	25	1.92
48086029--48086536	110	4.7	105	76	10	393	38	16	19	25	1.92
48086036--48086490	72	6.3	73	79	6	426	38	16	20	25	1.93
48086029--48086510	145	3.3	143	79	7	474	38	16	19	25	1.92
48090587--48090718	19	6.8	19	89	3	210	38	10	15	35	1.82
48090587--48090725	59	2.4	57	88	9	212	38	10	15	35	1.81
48096817--48096856	15	2.9	14	89	10	64	92	7	0	0	0.38
48096817--48096856	1	40.0	1	84	0	53	92	7	0	0	0.38
48098208--48098405	44	4.5	44	68	12	136	27	20	26	26	1.99
48098109--48098497	132	2.9	132	94	0	679	28	21	25	24	1.99
48098489--48099071	44	13.5	43	73	11	315	28	20	23	28	1.99
48098489--48099078	84	6.8	82	72	13	323	28	20	23	28	1.99
48098485--48099090	217	2.8	216	93	1	1041	28	20	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48098573--48098938	173	2.1	173	79	8	384	27	20	24	27	1.99
48099256--48099387	19	6.8	19	89	3	210	38	10	15	35	1.82
48099256--48099394	59	2.4	57	88	9	212	38	10	15	35	1.81
48100140--48100188	25	2.0	25	87	0	71	32	8	4	55	1.48
48101432--48101473	23	1.9	22	85	9	59	42	4	11	40	1.63
48102246--48102300	15	3.6	16	82	7	53	78	1	5	14	1.02
48102258--48102301	20	2.2	20	92	8	72	79	0	4	15	0.89
48103489--48103662	45	3.8	45	73	7	170	30	20	16	32	1.94
48103790--48103900	44	2.6	43	90	4	163	28	25	20	25	1.99
48105126--48105172	21	2.2	21	88	0	67	29	23	17	29	1.97
48112341--48112376	18	1.9	19	88	5	56	38	2	27	30	1.71
48123589--48123876	122	2.4	122	90	2	447	30	25	20	23	1.98
48123605--48123876	40	6.8	40	89	3	420	29	25	20	24	1.99
48125809--48125872	22	2.9	21	79	13	58	23	6	1	68	1.21
48126257--48126464	107	1.9	107	93	0	353	30	16	18	34	1.93
48128739--48128781	22	1.9	22	90	4	68	53	6	2	37	1.41
48129635--48129674	18	2.2	18	90	0	62	42	5	0	52	1.23
48130736--48130766	3	10.3	3	100	0	62	32	32	0	35	1.58
48139002--48139169	78	2.2	78	96	0	309	35	14	22	27	1.93
48140055--48140087	15	2.2	15	94	0	57	18	0	15	66	1.25
48163717--48163794	35	2.1	36	81	11	88	34	20	16	28	1.94
48165340--48165376	19	1.9	19	100	0	74	32	24	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48166695--48166832	68	2.0	71	85	5	192	51	5	3	39	1.43
48181309--48181369	28	2.2	28	91	2	97	31	22	22	22	1.99
48181735--48181902	54	3.1	54	87	3	248	20	17	22	39	1.92
48181734--48181894	81	2.0	81	90	0	250	20	17	23	38	1.93
48181734--48181894	27	6.0	27	87	0	223	20	17	23	38	1.93
48184997--48185061	24	2.5	27	83	11	75	32	13	12	41	1.82
48200546--48200597	18	3.1	16	84	15	70	40	0	0	59	0.97
48200547--48200597	5	10.6	5	76	23	56	39	0	0	60	0.97
48201460--48201497	16	2.4	16	86	8	51	47	2	28	21	1.64
48201771--48201841	23	3.0	24	91	6	119	22	21	19	36	1.95
48201771--48201880	23	5.1	21	80	9	116	20	20	22	37	1.95
48202935--48202984	24	2.1	24	92	0	82	14	30	32	24	1.94
48204364--48204439	5	15.2	5	100	0	152	59	0	0	40	0.98
48210463--48210515	26	2.0	26	96	0	97	33	1	11	52	1.48
48212206--48212253	24	2.1	21	82	17	53	45	16	10	27	1.80
48215809--48215865	29	2.0	28	83	10	71	52	5	3	38	1.41
48224807--48224896	45	2.0	45	100	0	180	33	26	11	28	1.91
48227099--48227150	27	1.9	27	92	0	86	23	17	21	38	1.93
48227113--48227522	27	15.1	27	84	1	390	19	17	23	39	1.92
48236830--48236854	12	2.1	12	100	0	50	52	8	0	40	1.31
48237196--48237562	47	7.9	47	90	2	573	40	14	11	33	1.82
48237195--48237562	23	15.9	23	67	18	171	40	14	11	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48237816--48237850	15	2.3	15	90	9	54	51	22	0	25	1.48
48238500--48238623	43	2.9	43	82	11	137	32	31	18	17	1.94
48258165--48258532	47	7.9	47	91	1	600	40	15	11	32	1.82
48258165--48258532	186	2.0	186	92	2	614	40	15	11	32	1.82
48258786--48258820	15	2.3	15	90	9	54	51	22	0	25	1.48
48259470--48259593	43	2.9	43	82	11	146	32	30	18	18	1.95
48268099--48268143	18	2.5	18	82	7	56	40	17	4	37	1.70
48270165--48270194	13	2.2	14	94	5	53	70	3	20	6	1.25
48276910--48276947	18	2.2	18	90	9	62	71	2	5	21	1.19
48277105--48277170	33	2.0	33	96	0	123	27	22	10	39	1.87
48287428--48287468	18	2.2	18	86	4	64	75	12	0	12	1.05
48287429--48287464	18	1.9	19	94	5	65	72	13	0	13	1.13
48293113--48293158	24	2.0	21	84	12	56	58	0	0	41	0.98
48309321--48309379	29	2.0	29	83	6	75	55	6	6	30	1.52
48316034--48316110	39	2.0	39	100	0	154	28	11	12	46	1.77
48316342--48316435	48	1.9	49	86	2	136	19	15	22	42	1.89
48321184--48321264	39	2.1	39	97	0	153	32	9	11	46	1.72
48321184--48321247	22	3.1	22	63	28	59	32	9	10	46	1.71
48321492--48321588	48	2.0	48	84	9	126	18	13	23	44	1.85
48326300--48326325	13	2.0	13	100	0	52	46	7	7	38	1.61
48327511--48327687	51	3.5	49	71	12	142	25	15	27	31	1.95
48327539--48327675	50	2.7	50	82	4	159	22	16	29	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48334951--48334996	18	2.5	18	76	16	58	43	6	15	34	1.72
48336172--48336522	173	2.0	175	95	1	634	42	19	14	24	1.88
48354580--48355153	81	7.1	81	86	2	749	19	16	21	42	1.89
48354580--48355128	27	20.3	27	85	1	670	19	16	21	42	1.90
48355362--48355395	18	1.9	18	88	5	52	23	50	14	11	1.76
48355787--48355832	22	2.0	23	95	4	85	39	36	0	23	1.55
48366800--48366932	27	5.0	27	85	8	173	16	17	22	43	1.87
48370214--48370277	27	2.4	27	81	0	83	14	15	21	48	1.80
48376311--48376358	18	2.7	18	78	9	62	41	2	16	39	1.60
48379546--48379603	26	2.2	27	78	9	66	22	5	3	68	1.24
48384942--48385645	47	14.9	47	96	2	1293	32	7	29	30	1.86
48384942--48386099	94	12.4	94	84	10	1310	32	7	29	30	1.86
48385565--48385716	74	2.1	74	98	0	295	32	5	28	32	1.80
48385614--48385665	25	2.1	25	100	0	104	36	0	26	36	1.57
48385639--48386099	47	9.7	47	95	2	814	32	7	29	30	1.85
48384942--48386366	454	3.1	454	95	2	2460	32	7	29	30	1.86
48386019--48386170	74	2.1	74	98	0	295	32	5	28	32	1.80
48386068--48386119	25	2.1	25	100	0	104	36	0	26	36	1.57
48386093--48386366	47	5.7	47	91	2	422	33	8	29	29	1.86
48386093--48386366	96	2.9	96	92	1	444	33	8	29	29	1.86
48386093--48386366	143	1.9	142	90	3	433	33	8	29	29	1.86
48386485--48386563	37	2.1	37	88	0	113	25	18	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48390643--48390679	16	2.3	16	86	13	58	54	5	0	40	1.24
48392107--48392178	36	2.0	36	97	0	135	40	13	13	31	1.85
48393981--48394016	12	3.2	12	88	11	58	22	0	0	77	0.76
48393978--48394023	17	2.9	16	87	9	60	26	0	0	73	0.83
48393973--48394042	29	2.4	28	77	17	79	18	5	0	75	0.99
48394401--48394448	22	2.2	22	84	0	60	18	2	6	72	1.15
48394407--48394464	10	5.5	10	76	17	55	18	0	6	74	1.04
48399627--48399766	70	2.0	70	100	0	280	44	10	17	28	1.81
48401008--48401198	30	6.4	30	90	0	265	17	31	31	18	1.95
48401008--48401198	90	2.1	90	88	0	292	17	31	31	18	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222