genome.fa.s15.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  143  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46361283--46361341	25	2.4	25	78	13	68	33	5	1	59	1.29
46379191--46379236	16	2.5	19	86	13	62	69	6	4	19	1.28
46379585--46379645	27	2.3	27	85	0	77	22	14	26	36	1.93
46385705--46385757	27	2.0	27	96	0	97	32	9	22	35	1.86
46387827--46387866	17	2.4	17	87	8	55	62	5	2	30	1.29
46387844--46388184	103	3.4	100	89	4	524	54	14	0	30	1.44
46388091--46388268	88	2.1	85	88	7	261	52	14	0	33	1.41
46387862--46388409	185	2.8	197	83	11	692	54	14	0	30	1.43
46388176--46388421	92	2.6	95	85	5	295	54	14	0	30	1.43
46387964--46388433	99	5.0	93	75	10	264	54	14	0	30	1.44
46388560--46388605	9	4.5	11	89	10	55	0	30	0	69	0.89
46388580--46388608	3	9.7	3	100	0	58	0	31	0	68	0.89
46388666--46388712	24	1.9	25	86	4	69	63	0	0	36	0.94
46391027--46391114	44	2.0	44	86	0	122	39	11	3	45	1.57
46394004--46394028	13	1.9	13	100	0	50	32	12	16	40	1.84
46398845--46399114	89	3.0	89	96	0	477	35	16	12	35	1.86
46399219--46399310	29	3.2	29	76	9	89	66	3	2	28	1.19
46399228--46399301	38	2.0	37	81	7	87	67	2	2	27	1.17
46399903--46399947	20	2.1	21	84	8	56	42	2	2	53	1.25
46400541--46400585	11	4.2	11	83	13	58	17	33	0	48	1.48
46400543--46400585	20	2.1	21	91	4	70	18	32	0	48	1.48
46400565--46400673	51	2.1	51	84	3	139	34	22	0	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46401801--46401832	7	4.6	7	96	0	55	25	0	12	62	1.30
46401804--46401838	14	2.5	13	86	13	52	25	0	14	60	1.35
46402484--46402518	18	1.9	18	88	0	52	25	34	8	31	1.86
46402920--46403033	25	4.7	25	67	20	89	38	2	14	43	1.60
46403026--46403068	23	1.9	23	95	4	70	51	23	0	25	1.49
46403033--46403592	29	19.4	29	91	1	885	48	30	0	21	1.52
46406717--46407066	124	2.8	124	91	0	567	32	20	16	30	1.95
46410271--46410299	12	2.3	13	94	5	51	34	10	0	55	1.34
46414042--46414087	19	2.4	18	82	10	56	23	23	13	39	1.90
46423358--46423386	12	2.3	13	94	5	51	34	10	0	55	1.34
46428619--46428729	37	3.0	37	88	2	152	22	13	27	36	1.92
46429751--46429855	48	2.2	49	87	1	158	21	27	20	29	1.98
46447115--46447214	42	2.4	42	93	0	164	24	27	11	38	1.88
46449332--46449418	29	3.0	29	81	1	93	41	20	14	22	1.89
46450336--46450371	8	4.9	7	93	6	54	83	0	16	0	0.65
46450335--46450372	15	2.5	15	86	4	58	84	0	15	0	0.63
46450729--46450768	20	2.0	20	90	4	64	37	12	12	37	1.81
46451322--46451377	18	2.9	19	73	26	55	51	0	0	48	1.00
46451721--46451747	13	2.1	13	100	0	54	37	7	14	40	1.74
46454650--46454684	15	2.2	16	90	5	54	57	2	0	40	1.14
46454662--46454687	13	2.0	13	100	0	52	53	7	0	38	1.30
46454696--46454752	15	3.5	15	71	17	51	50	1	1	45	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46463887--46463936	20	2.5	20	90	0	73	24	22	24	30	1.99
46468781--46469023	51	4.8	51	77	4	249	29	25	14	29	1.95
46468781--46469023	102	2.4	101	88	2	353	29	25	14	29	1.95
46469491--46469549	30	1.9	31	86	10	86	27	20	8	44	1.80
46471888--46471962	23	3.3	23	96	0	132	33	25	21	20	1.97
46472189--46472227	18	2.2	17	86	13	53	46	20	0	33	1.51
46480333--46480399	27	2.4	27	76	16	75	64	0	1	34	1.03
46480323--46480387	33	1.9	34	84	3	87	63	1	3	32	1.19
46480331--46480396	25	2.7	25	84	9	84	65	0	1	33	1.02
46481826--46482505	50	13.6	50	68	3	420	21	25	23	29	1.99
46481770--46482513	100	7.5	100	87	0	1026	21	26	23	28	1.99
46481813--46482539	199	3.6	199	89	0	1035	22	26	23	28	1.99
46483884--46483916	15	2.2	15	94	0	57	0	21	0	78	0.75
46484382--46484448	8	7.2	9	73	17	57	1	13	2	82	0.86
46484385--46484449	10	6.5	10	72	12	53	1	12	3	83	0.84
46487079--46487113	16	2.2	16	89	0	52	42	20	14	22	1.88
46488711--46488783	34	2.1	36	84	5	96	63	1	2	32	1.17
46502180--46502215	12	3.0	12	91	0	54	33	5	2	58	1.36
46502422--46502460	17	2.2	18	90	4	62	28	0	0	71	0.86
46503048--46503092	22	2.0	22	83	8	56	53	15	0	31	1.43
46507733--46507910	27	6.6	27	83	6	198	30	28	15	26	1.96
46512275--46512999	45	16.1	45	87	0	993	27	16	26	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46515867--46516185	101	3.2	101	87	6	490	31	14	24	30	1.94
46516161--46516186	7	3.7	7	100	0	52	42	11	30	15	1.82
46516651--46516688	13	2.8	14	84	4	51	44	0	13	42	1.43
46516829--46517595	44	17.2	44	72	10	389	31	18	20	28	1.97
46516852--46517290	181	2.4	182	77	6	396	30	18	22	29	1.97
46517379--46517662	134	2.1	134	88	3	437	33	20	17	28	1.95
46517346--46517598	90	2.9	85	74	10	224	30	20	19	28	1.97
46517911--46518131	44	4.9	44	73	9	176	29	19	23	28	1.98
46519632--46519667	12	3.0	12	91	0	54	33	5	2	58	1.36
46522145--46522266	65	1.9	63	85	6	165	26	4	14	54	1.61
46523596--46523630	12	3.0	11	91	8	52	77	0	22	0	0.78
46524791--46524937	21	6.5	23	71	20	107	20	19	20	39	1.93
46524876--46524932	23	2.6	21	81	10	69	19	24	19	36	1.94
46524791--46524962	92	1.9	92	86	0	245	21	19	19	39	1.93
46531520--46531571	23	2.2	24	77	19	56	42	1	3	51	1.31
46538439--46538562	58	2.1	58	86	2	169	46	0	3	49	1.23
46538742--46538793	16	3.2	16	80	0	59	30	19	3	46	1.68
46542915--46542990	23	3.3	23	81	0	89	26	21	23	28	1.99
46546524--46546601	28	2.4	35	70	28	98	30	26	14	28	1.95
46546537--46546629	28	3.3	28	92	1	141	32	25	12	29	1.93
46554525--46554647	28	4.4	28	92	2	185	33	27	12	26	1.92
46556471--46556677	99	2.1	99	99	0	405	29	13	21	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46564435--46564607	75	2.3	75	85	0	229	24	24	27	23	2.00
46569066--46569105	21	1.9	21	84	0	53	47	22	15	15	1.82
46569101--46569169	21	3.3	21	64	9	52	46	17	20	15	1.84
46569063--46569183	42	2.9	41	85	4	152	46	19	20	14	1.84
46570897--46570953	30	1.9	30	85	7	80	26	17	26	29	1.97
46577664--46577705	19	2.2	20	95	4	77	7	14	0	78	0.95
46586924--46587102	88	2.0	86	91	3	250	39	8	15	36	1.79
46587805--46587843	20	1.9	21	85	15	55	41	5	12	41	1.65
46589662--46589807	65	2.2	65	98	0	283	17	10	28	43	1.83
46592526--46592565	15	2.8	15	92	7	66	55	5	5	35	1.44
46603506--46603548	22	2.0	22	86	4	61	62	18	6	11	1.50
46614032--46614149	60	2.0	60	87	0	173	16	29	12	40	1.86
46619569--46619640	35	2.0	36	91	2	119	30	11	31	26	1.91
46621199--46621233	18	2.0	18	88	5	54	62	2	0	34	1.10
46626718--46626864	50	3.0	50	95	3	255	36	18	10	34	1.86
46626888--46626974	26	3.2	26	65	15	68	35	8	11	44	1.70
46626866--46626974	55	2.0	55	92	0	182	32	11	11	45	1.74
46632647--46632683	18	2.0	18	89	5	56	62	0	0	37	0.96
46642662--46642806	32	4.5	32	84	1	157	34	22	13	29	1.93
46642662--46642806	64	2.3	64	83	4	177	34	22	13	29	1.93
46643440--46643474	18	1.9	18	94	0	61	37	11	20	31	1.88
46643452--46643499	25	1.9	25	91	0	78	39	14	18	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46643436--46643534	43	2.3	43	91	0	153	36	15	20	28	1.92
46645422--46645456	8	4.5	8	89	3	54	22	2	0	74	0.95
46647389--46647626	28	8.5	28	95	0	397	26	12	27	33	1.93
46655697--46655959	28	9.4	28	92	2	397	25	12	28	33	1.92
46655697--46655959	83	3.1	84	92	2	413	25	12	28	33	1.92
46655697--46655959	111	2.4	112	88	2	404	25	12	28	33	1.92
46659039--46659218	96	1.9	97	83	3	238	36	13	16	33	1.88
46665276--46665344	20	3.5	20	75	11	79	37	18	10	33	1.85
46665264--46665342	39	2.0	39	95	0	140	35	15	10	39	1.81
46676531--46676588	10	5.8	10	89	0	89	37	0	0	62	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222