genome.fa.s15.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  193  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61691164--61691210	10	4.7	10	82	10	51	27	25	0	46	1.53
61691972--61692000	12	2.4	12	100	0	58	41	0	41	17	1.49
61696288--61696421	67	2.0	67	91	0	214	32	9	23	33	1.88
61697769--61697811	21	2.0	22	86	13	63	44	0	13	41	1.44
61697769--61697812	20	2.1	21	84	12	56	45	0	13	40	1.44
61697881--61698034	64	2.4	64	90	3	229	33	8	16	42	1.78
61698177--61698283	41	2.6	41	89	0	169	22	17	23	36	1.95
61700396--61700443	19	2.5	19	86	6	62	50	0	25	25	1.50
61699874--61701056	600	2.0	598	98	0	2312	30	11	22	35	1.89
61700996--61701043	19	2.5	19	86	6	62	50	0	25	25	1.50
61707456--61707518	31	2.1	31	90	3	101	14	26	31	26	1.95
61708179--61708278	33	3.0	34	77	2	112	39	14	11	36	1.81
61716342--61716390	21	2.3	21	96	0	89	26	34	4	34	1.76
61722541--61722585	18	2.6	18	89	3	65	17	33	24	24	1.96
61724824--61724881	6	10.0	6	73	12	50	50	0	0	50	1.00
61724830--61724914	35	2.4	34	84	7	100	48	1	1	49	1.16
61735117--61735176	25	2.4	27	79	20	78	3	35	3	58	1.31
61738055--61738107	21	2.5	21	87	0	70	30	33	9	26	1.88
61739070--61739121	18	2.9	17	78	13	59	65	3	1	28	1.21
61741169--61741231	31	2.0	31	84	6	81	42	1	3	52	1.27
61741188--61741252	31	2.1	31	82	0	76	49	1	0	49	1.10
61741239--61741306	12	5.7	12	73	16	61	52	1	0	45	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61741220--61741301	24	3.3	24	75	14	69	53	1	0	45	1.08
61743321--61743379	22	2.7	21	82	12	66	79	1	5	13	0.97
61744456--61744614	50	3.2	50	70	7	151	28	21	19	30	1.98
61744400--61744697	100	3.0	100	85	2	330	26	23	19	30	1.98
61752428--61752467	20	2.0	20	100	0	80	30	15	25	30	1.95
61756916--61756974	22	2.7	21	82	12	66	79	1	5	13	0.97
61757996--61758293	100	3.0	100	87	2	411	26	24	19	29	1.99
61758064--61758238	50	3.5	50	71	3	163	27	24	17	30	1.97
61765311--61765336	12	2.2	12	100	0	52	53	0	15	30	1.42
61767151--61767192	14	3.1	13	78	21	50	59	4	0	35	1.19
61767159--61767196	16	2.4	16	82	4	51	60	5	0	34	1.19
61767386--61767432	16	2.8	16	78	12	51	59	4	4	31	1.36
61767440--61767474	18	1.9	18	88	11	54	62	8	0	28	1.24
61768182--61768226	23	2.0	23	86	4	65	13	8	8	68	1.38
61778078--61778184	15	7.3	15	71	6	76	21	20	27	30	1.98
61778154--61778225	14	5.2	14	66	15	51	15	20	36	27	1.93
61778058--61778241	28	6.5	28	75	6	138	21	21	26	29	1.99
61780587--61780624	19	2.0	19	90	10	60	15	18	39	26	1.91
61783048--61783076	5	5.8	5	100	0	58	79	0	0	20	0.74
61783711--61783777	29	2.3	29	89	2	100	40	8	0	50	1.34
61783916--61784050	4	34.0	4	70	21	56	68	0	31	0	0.95
61783951--61784081	10	12.6	10	68	15	61	70	0	29	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61783906--61783966	31	2.0	31	87	6	88	60	1	37	0	1.07
61783921--61784079	36	4.2	37	78	14	155	67	0	31	0	0.95
61783947--61784010	22	2.8	23	78	7	76	73	0	26	0	0.84
61783951--61784113	43	4.0	42	73	16	148	69	0	30	0	0.93
61783926--61784113	79	2.5	76	86	9	258	67	1	31	0	0.98
61789000--61789083	42	2.0	42	100	0	168	30	21	30	16	1.95
61791254--61791456	46	4.3	48	88	7	265	35	14	21	28	1.92
61791188--61791456	98	2.7	98	93	0	457	34	14	22	28	1.93
61791420--61791528	37	3.0	37	90	2	177	35	16	22	24	1.95
61793759--61793787	3	9.7	3	100	0	58	68	31	0	0	0.89
61794016--61794089	27	2.7	27	79	4	78	16	31	27	25	1.96
61794162--61794226	28	2.4	28	92	2	105	50	0	7	41	1.31
61794480--61794538	31	1.9	31	89	0	91	44	1	0	54	1.10
61795161--61795211	10	5.3	9	80	13	57	56	0	1	41	1.10
61795227--61795277	23	2.3	23	79	3	59	47	3	1	47	1.32
61796087--61796140	7	7.6	7	78	12	56	81	0	0	18	0.69
61796087--61796139	6	8.7	6	85	6	54	81	0	0	18	0.70
61796094--61796140	13	3.8	13	81	13	64	80	0	0	19	0.70
61796082--61796139	24	2.4	24	85	2	71	81	1	0	17	0.78
61796092--61796167	24	3.3	23	77	16	61	73	3	0	22	0.99
61796087--61796149	28	2.2	29	88	5	92	79	0	0	20	0.73
61797128--61797153	3	8.7	3	100	0	52	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61801364--61801417	23	2.3	23	93	0	90	40	5	9	44	1.60
61801364--61801425	23	2.7	23	89	2	79	41	4	8	45	1.55
61801444--61801482	19	2.2	18	86	9	53	74	2	12	10	1.17
61805702--61805748	20	2.3	20	85	7	69	27	25	8	38	1.85
61812986--61813140	37	4.2	36	80	5	157	37	18	16	27	1.92
61821353--61821412	21	2.8	21	74	2	57	31	30	30	8	1.87
61828693--61828725	3	11.0	3	93	0	57	33	36	0	30	1.58
61844309--61844357	18	2.7	18	75	12	55	63	0	4	32	1.13
61844555--61844593	20	2.0	20	85	9	55	30	2	2	64	1.21
61850911--61850965	7	8.5	6	84	11	56	10	3	1	83	0.84
61850911--61850966	6	8.4	7	82	9	57	10	3	1	83	0.83
61859017--61859195	49	3.7	49	80	5	202	41	20	24	13	1.88
61859017--61859156	46	3.0	45	86	7	163	43	21	21	13	1.87
61860416--61860618	89	2.3	87	83	1	262	27	19	24	29	1.99
61860416--61860629	44	4.9	44	80	3	225	27	19	24	28	1.98
61868580--61868624	8	5.8	8	89	5	56	17	0	4	77	0.92
61871052--61871113	30	2.1	30	93	6	108	29	12	16	41	1.85
61874217--61874472	72	3.6	72	99	0	503	42	24	6	27	1.78
61874473--61874504	3	10.7	3	100	0	64	68	0	0	31	0.90
61878762--61878872	34	3.1	34	62	18	82	45	27	3	24	1.70
61878723--61878978	72	3.6	72	97	0	485	42	24	5	26	1.77
61878979--61879013	3	11.7	3	100	0	70	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61882113--61882165	3	17.7	3	100	0	106	66	0	0	33	0.92
61886903--61886956	16	3.4	16	73	14	58	31	14	3	50	1.61
61891704--61891739	18	2.1	17	89	5	54	55	0	5	38	1.23
61891697--61891755	24	2.5	23	78	8	64	54	3	3	38	1.34
61896086--61897015	44	20.5	44	74	9	688	29	20	17	33	1.95
61896086--61897015	89	10.2	88	74	9	674	29	20	17	33	1.95
61896086--61897015	133	6.8	133	75	9	714	29	20	17	33	1.95
61905859--61905891	17	1.9	17	93	0	57	57	9	0	33	1.30
61906304--61906332	15	2.0	15	93	6	51	68	0	6	24	1.13
61916104--61916134	12	2.6	12	94	0	53	25	0	0	74	0.82
61916404--61916468	27	2.4	28	94	2	114	41	10	0	47	1.38
61916879--61916944	19	3.5	19	79	4	89	37	10	1	50	1.47
61917024--61917188	82	2.0	82	96	0	303	44	10	7	37	1.66
61917678--61917742	28	2.4	28	94	2	114	47	0	10	41	1.38
61922002--61922082	28	2.9	28	87	1	101	48	19	11	20	1.79
61922011--61922090	27	2.9	27	83	5	81	46	20	11	22	1.82
61923645--61923690	23	2.1	22	92	8	76	30	6	4	58	1.43
61924015--61924073	25	2.5	23	79	15	66	15	1	5	77	1.01
61924129--61924170	19	2.2	20	82	4	50	30	7	11	50	1.66
61927266--61927309	17	2.5	17	85	7	52	52	13	2	31	1.53
61934333--61934363	5	6.2	5	100	0	62	0	0	61	38	0.96
61943355--61943430	30	2.5	30	84	0	107	35	21	14	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61943968--61944009	21	2.1	19	86	8	57	50	9	9	30	1.67
61945560--61945655	31	3.1	31	95	3	174	31	9	13	45	1.75
61946746--61946964	82	2.7	81	82	5	278	37	16	22	22	1.93
61957621--61957699	5	16.0	5	76	19	69	36	0	1	62	1.04
61957620--61957695	19	3.9	19	79	5	82	35	0	1	63	1.03
61965561--61965621	31	2.0	31	83	0	77	39	11	4	44	1.62
61965744--61965823	31	2.6	30	86	5	99	51	10	3	35	1.53
61975587--61975641	25	2.2	25	86	0	74	34	23	20	21	1.97
61975608--61975713	25	4.2	25	70	10	72	37	19	24	17	1.94
61983405--61983436	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222