genome.fa.s15.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  136  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44171437--44171556	44	2.8	43	80	7	136	47	8	10	34	1.67
44171828--44171886	3	19.7	3	100	0	118	32	0	0	67	0.91
44176127--44176319	50	3.7	50	81	4	206	24	27	21	26	1.99
44181547--44181577	11	2.9	11	95	4	55	19	35	0	45	1.51
44182759--44182783	7	3.6	7	100	0	50	28	0	12	60	1.32
44183434--44183473	18	2.2	18	95	0	71	22	30	7	40	1.81
44183679--44184150	115	4.1	115	97	0	883	39	9	7	43	1.64
44183679--44184150	229	2.1	231	97	0	885	39	9	7	43	1.64
44187785--44187814	14	2.1	14	100	0	60	20	6	23	50	1.71
44190612--44190651	16	2.5	16	91	0	62	47	2	7	42	1.45
44190618--44190754	66	2.2	63	77	16	153	41	3	8	46	1.51
44190724--44190767	9	5.1	9	89	10	74	31	0	11	56	1.35
44190721--44190758	16	2.4	16	95	0	67	34	0	10	55	1.34
44190655--44190851	84	2.4	84	97	1	371	39	4	8	47	1.53
44190808--44190860	9	6.1	9	91	8	92	32	0	11	56	1.35
44190808--44190860	25	2.0	26	92	7	90	32	0	11	56	1.35
44191351--44191411	9	6.8	9	90	0	86	11	39	13	36	1.80
44193555--44193869	92	3.3	92	93	3	513	40	10	11	37	1.76
44196190--44196236	20	2.3	20	85	7	60	72	8	2	17	1.19
44199501--44199796	51	5.7	50	76	11	222	29	15	25	30	1.96
44199615--44199731	60	1.9	59	88	6	173	33	13	23	29	1.93
44199671--44199793	50	2.4	51	94	1	212	30	17	24	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44203367--44203418	18	2.9	18	94	0	86	36	13	9	40	1.77
44205340--44205365	3	8.7	3	100	0	52	0	0	65	34	0.93
44245027--44245078	6	9.2	6	95	4	74	73	0	0	26	0.84
44259616--44259716	3	33.7	3	100	0	202	0	33	0	66	0.92
44261357--44261430	3	24.7	3	81	10	89	62	1	2	33	1.18
44264374--44264409	17	2.1	17	100	0	72	30	5	22	41	1.76
44265006--44265030	11	2.3	11	100	0	50	64	8	20	8	1.46
44267319--44267419	30	3.4	28	76	11	87	31	4	1	61	1.28
44267344--44267478	30	4.7	30	74	16	108	28	2	0	68	1.09
44267357--44267456	9	10.7	9	72	15	62	28	4	1	67	1.15
44267336--44267440	10	10.6	10	73	11	56	31	2	0	64	1.14
44267415--44267462	18	2.7	18	90	9	73	20	4	0	75	0.97
44267356--44267470	10	12.4	9	69	20	51	27	3	0	67	1.12
44267810--44267842	15	2.1	17	88	11	52	60	0	0	39	0.97
44271403--44271442	21	1.9	21	84	0	53	30	2	10	57	1.45
44276685--44276730	15	3.1	15	81	9	58	52	0	0	47	1.00
44276849--44276911	32	2.0	32	87	0	90	44	6	6	42	1.55
44278757--44278804	19	2.5	19	83	9	62	39	4	0	56	1.19
44278802--44278845	22	2.1	20	83	8	52	36	6	2	54	1.40
44279132--44279198	29	2.3	29	79	5	73	32	8	1	56	1.39
44279168--44279205	19	2.1	19	85	5	51	31	5	2	60	1.33
44280433--44280468	19	2.0	17	89	10	54	44	16	5	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44286648--44286709	25	2.5	26	82	7	76	24	30	14	30	1.95
44291453--44291486	17	1.9	18	88	5	52	41	2	0	55	1.15
44294840--44294954	54	2.1	54	80	6	126	22	28	25	23	1.99
44295723--44295863	40	3.5	40	81	1	158	31	16	28	23	1.96
44302665--44302695	15	2.1	15	100	0	62	29	25	19	25	1.99
44305726--44305787	29	2.1	29	94	5	108	46	6	24	22	1.75
44306271--44306329	24	2.5	24	94	0	100	18	28	18	33	1.95
44306271--44306356	24	3.6	22	85	7	73	17	26	18	37	1.93
44306341--44306411	24	2.9	24	73	10	63	19	25	21	33	1.97
44310692--44310721	13	2.3	13	94	0	51	30	6	6	56	1.51
44311523--44311560	20	1.9	20	84	10	51	42	7	10	39	1.69
44321700--44321748	21	2.3	22	75	3	55	28	32	0	38	1.57
44321790--44321893	48	2.2	47	84	5	136	28	48	2	20	1.64
44322748--44322872	29	4.4	29	71	9	87	52	29	2	16	1.56
44323021--44323045	2	12.5	2	100	0	50	0	48	0	52	1.00
44330346--44330391	22	2.1	22	84	8	58	58	0	2	39	1.10
44338052--44338117	20	3.3	20	72	4	71	54	9	16	19	1.68
44338041--44338122	39	2.1	39	97	0	155	52	7	19	20	1.70
44338040--44338098	19	3.1	19	70	4	64	54	6	20	18	1.66
44338304--44338329	3	8.7	3	100	0	52	30	0	0	69	0.89
44338952--44339111	48	3.2	48	67	19	128	36	6	3	53	1.46
44339015--44339065	20	2.6	20	81	3	59	41	7	0	50	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44344191--44344227	18	2.2	17	90	9	58	48	0	0	51	1.00
44354890--44354964	32	2.7	25	71	24	69	53	1	1	44	1.17
44354959--44354987	14	2.1	14	100	0	58	58	0	0	41	0.98
44355663--44355688	12	2.2	12	100	0	52	7	38	23	30	1.83
44358604--44358656	18	3.0	17	91	5	79	39	1	1	56	1.21
44358802--44358903	44	2.4	41	76	19	118	35	29	3	31	1.76
44358815--44358907	44	2.1	46	91	4	154	36	27	4	31	1.76
44358889--44358941	16	3.3	16	91	0	79	24	32	3	39	1.73
44358851--44359071	116	1.9	116	82	3	275	32	25	6	35	1.82
44359000--44359058	16	3.8	16	84	2	75	32	20	1	45	1.61
44359274--44359311	19	2.0	19	89	0	58	63	5	0	31	1.17
44359234--44359327	28	3.5	27	79	11	104	63	2	1	32	1.13
44359277--44359345	34	2.0	34	83	10	88	66	4	0	28	1.10
44359337--44359450	19	5.8	20	69	12	67	61	5	1	31	1.28
44359419--44359505	45	1.9	45	83	4	113	56	3	2	37	1.29
44359501--44359654	19	7.9	19	67	19	77	55	5	0	38	1.27
44359482--44359697	79	2.7	80	89	4	321	54	5	0	39	1.29
44359474--44359708	10	23.5	10	67	17	96	54	5	0	39	1.28
44359691--44359723	16	2.1	16	88	11	50	69	0	0	30	0.88
44363503--44363527	13	1.9	13	100	0	50	56	4	0	40	1.18
44363719--44363769	3	17.3	3	83	4	68	60	1	3	33	1.26
44363718--44363759	8	5.2	8	78	21	52	59	2	2	35	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44364762--44364921	50	3.2	49	69	8	142	25	24	20	30	1.98
44364708--44365026	101	3.2	101	91	0	514	25	23	20	31	1.98
44364708--44364972	51	5.2	50	67	10	180	26	23	19	30	1.98
44367865--44367891	12	2.2	12	100	0	54	33	40	18	7	1.78
44370020--44370091	23	3.0	23	78	17	67	59	2	16	20	1.49
44377661--44377719	3	20.0	3	80	3	66	62	3	3	30	1.28
44377661--44377707	17	2.7	17	83	3	58	59	2	4	34	1.29
44384257--44384352	10	10.9	9	64	20	51	36	2	1	60	1.15
44384253--44384289	15	2.4	16	82	17	51	35	0	0	64	0.94
44384322--44384351	15	1.9	16	93	6	53	40	0	0	60	0.97
44387436--44387512	32	2.4	32	82	0	100	45	6	23	24	1.76
44391944--44392020	32	2.4	32	80	0	91	44	6	24	24	1.77
44396994--44397033	20	2.0	21	85	5	55	30	0	27	42	1.56
44401432--44401510	40	2.0	40	94	0	140	27	15	20	36	1.92
44409983--44410032	24	2.1	24	82	14	59	52	8	2	38	1.43
44413482--44413523	18	2.3	18	87	0	57	45	9	9	35	1.69
44419687--44419741	14	3.8	14	71	23	51	58	10	0	30	1.33
44423532--44423580	24	2.0	24	100	0	98	28	26	4	40	1.74
44431958--44432002	20	2.3	19	84	7	54	24	33	11	31	1.90
44434099--44434217	25	4.7	25	68	10	80	34	21	22	21	1.97
44434234--44434287	23	2.2	25	77	12	67	33	20	27	18	1.96
44434240--44434287	23	2.1	23	88	0	69	33	18	29	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44434280--44434329	26	1.9	26	91	0	82	40	24	18	18	1.91
44437838--44437936	51	1.9	50	82	8	119	59	3	2	35	1.24
44437836--44437953	51	2.3	52	77	9	118	59	3	1	35	1.24
44441241--44441538	140	2.1	140	88	0	443	31	21	20	26	1.98
44441725--44441840	43	2.7	43	91	0	187	26	34	17	21	1.95
44441851--44441881	16	1.9	16	93	0	53	54	0	0	45	0.99
44442044--44442103	18	3.4	18	64	13	52	40	10	6	43	1.64
44446351--44446479	53	2.4	53	98	0	249	29	13	4	52	1.60
44446717--44446777	21	3.0	21	79	18	74	32	45	0	21	1.52
44446717--44446785	34	2.0	36	88	11	108	33	44	0	21	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222