genome.fa.s15.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  142  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46029319--46029379	14	4.3	14	83	4	77	21	0	29	49	1.50
46029324--46029379	22	2.6	21	80	5	76	21	0	30	48	1.51
46029319--46029385	29	2.3	28	87	5	98	20	0	31	47	1.51
46029381--46029436	7	7.9	7	86	4	76	16	0	53	30	1.43
46029319--46029466	7	20.9	7	74	10	50	19	0	38	41	1.52
46031669--46031731	31	2.0	31	100	0	126	26	12	12	47	1.78
46060349--46060562	55	3.9	56	81	2	225	26	19	12	41	1.87
46064816--46064850	18	1.9	18	88	0	52	11	17	8	62	1.52
46066769--46066997	27	8.5	27	77	5	205	17	18	19	44	1.88
46066769--46067009	81	3.0	81	85	1	279	17	18	20	43	1.88
46067603--46067635	15	2.1	16	88	5	50	51	0	48	0	1.00
46067605--46067648	10	4.6	10	77	11	56	50	0	47	2	1.13
46070928--46070989	25	2.5	25	94	0	106	20	35	14	29	1.93
46070941--46070997	25	2.3	25	93	0	96	24	36	12	26	1.91
46071130--46071185	28	2.0	28	93	6	96	25	30	12	32	1.92
46071135--46071198	28	2.3	28	89	2	94	28	25	12	34	1.92
46075745--46075884	39	3.6	38	76	6	138	17	25	20	35	1.95
46080520--46080634	49	2.3	49	77	4	124	26	22	18	33	1.97
46086862--46086951	25	3.6	25	80	8	87	26	25	17	30	1.98
46087112--46087173	31	2.1	30	82	17	76	46	8	16	29	1.75
46094634--46094685	26	2.0	27	88	3	79	65	7	25	1	1.30
46095944--46095973	7	4.1	7	95	4	51	43	26	0	30	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46096984--46097021	17	2.2	17	95	0	67	42	13	15	28	1.85
46107817--46107866	21	2.4	19	81	18	64	14	34	4	48	1.62
46117981--46118034	27	2.0	28	88	3	83	66	0	1	31	1.02
46118509--46118557	16	3.1	16	77	11	55	67	0	0	32	0.91
46127368--46127393	4	6.5	4	100	0	52	0	26	0	73	0.84
46141265--46141313	21	2.5	20	80	12	57	36	8	14	40	1.75
46142446--46142522	38	2.0	38	92	0	127	31	1	35	32	1.66
46143321--46143357	18	2.1	18	90	5	58	16	24	35	24	1.95
46149368--46149441	38	1.9	38	94	0	130	31	1	35	32	1.66
46150190--46150245	23	2.4	23	90	0	85	26	12	39	21	1.89
46152510--46152629	46	2.6	46	85	6	161	31	19	21	27	1.97
46152523--46152644	46	2.7	46	85	8	153	31	19	22	26	1.98
46155062--46155126	32	2.1	32	97	2	123	30	9	12	47	1.72
46155689--46155771	11	8.5	11	73	20	69	71	12	15	1	1.21
46155679--46155771	10	9.8	9	69	22	57	70	12	15	1	1.21
46155678--46155754	20	3.9	20	85	8	104	70	12	15	1	1.24
46158915--46158979	32	2.1	32	97	2	123	30	9	12	47	1.72
46159736--46159777	20	2.1	20	86	0	57	47	0	7	45	1.30
46162877--46162926	23	2.2	23	82	7	57	56	0	10	34	1.33
46163085--46163145	21	2.9	21	75	20	63	73	3	19	3	1.11
46163488--46163525	20	1.9	20	84	10	51	52	0	15	31	1.43
46164021--46164131	36	2.8	38	72	12	100	24	15	23	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46165489--46165657	32	5.3	32	78	0	158	21	21	21	35	1.96
46165552--46165671	64	1.9	64	83	0	159	23	20	20	35	1.96
46174324--46174729	47	8.6	47	88	4	575	33	8	29	29	1.86
46174324--46174729	96	4.3	96	93	2	680	33	8	29	29	1.86
46174324--46174729	143	2.9	143	88	5	633	33	8	29	29	1.86
46177108--46177511	40	10.1	40	92	1	623	23	22	28	25	1.99
46177707--46177815	57	1.9	57	86	1	155	23	20	27	28	1.99
46181223--46181579	47	7.6	47	91	1	552	32	8	29	28	1.87
46185937--46185985	24	2.0	24	84	0	62	59	4	2	34	1.28
46188003--46188463	169	2.7	169	91	0	771	27	27	16	28	1.97
46188483--46188660	44	4.0	44	93	1	268	31	26	16	25	1.96
46193667--46193715	24	2.0	24	84	0	62	59	4	2	34	1.28
46199534--46199608	19	3.8	19	91	6	114	36	18	10	34	1.86
46201070--46201141	28	2.5	28	90	2	108	38	19	26	15	1.91
46201098--46201269	45	3.9	45	79	3	186	36	18	27	17	1.94
46201098--46201270	88	2.0	89	87	1	249	35	18	28	17	1.93
46201230--46201357	28	4.6	28	79	3	150	35	17	30	17	1.93
46201230--46201381	56	2.7	56	81	2	162	36	17	28	17	1.93
46201230--46201381	28	5.4	28	77	4	137	36	17	28	17	1.93
46202812--46202904	23	4.0	22	77	15	82	19	16	19	45	1.86
46202812--46202910	46	2.2	46	85	3	128	20	15	18	46	1.84
46204911--46205043	49	2.7	49	80	4	135	24	15	31	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46209788--46209880	28	3.3	28	87	0	132	45	19	20	15	1.86
46209816--46209991	72	2.4	72	78	3	183	42	17	23	16	1.88
46210215--46210272	29	2.0	29	100	0	116	31	17	10	41	1.83
46212464--46212492	15	1.9	15	100	0	58	31	0	13	55	1.39
46219375--46219424	24	2.0	26	84	7	68	34	10	12	44	1.75
46221208--46221239	17	1.9	17	93	6	57	34	18	34	12	1.89
46221091--46221268	44	4.0	44	83	0	194	37	19	27	15	1.92
46221225--46221361	28	4.9	28	80	1	139	35	18	29	16	1.93
46221224--46221352	56	2.3	57	87	1	179	34	17	31	17	1.92
46221224--46221395	28	6.1	28	81	1	137	37	18	29	15	1.91
46222331--46222389	31	1.9	31	82	0	73	40	6	5	47	1.52
46228311--46228335	13	1.9	13	100	0	50	16	0	8	76	1.02
46231326--46231377	17	2.8	20	71	17	56	42	13	13	30	1.83
46231895--46232033	28	4.9	28	84	2	188	12	20	23	43	1.86
46231896--46232033	57	2.4	57	87	1	197	13	21	23	42	1.87
46236469--46236572	51	2.0	51	88	3	156	26	13	12	47	1.79
46237276--46237321	21	2.2	21	84	7	58	58	2	2	36	1.22
46245131--46245218	24	3.7	24	79	0	86	20	17	14	47	1.82
46245126--46245247	48	2.5	48	81	0	136	18	16	17	47	1.83
46245206--46245262	24	2.4	24	75	0	60	14	12	24	49	1.77
46247360--46247444	42	2.0	42	93	0	143	50	11	10	27	1.71
46248822--46248861	19	2.0	20	90	4	64	40	25	0	35	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46252821--46253002	88	2.0	88	88	3	265	41	9	20	28	1.83
46253482--46253549	29	2.4	29	82	7	77	14	22	19	44	1.86
46257334--46257359	7	3.7	7	100	0	52	26	0	0	73	0.84
46260659--46260726	35	1.9	35	90	0	109	14	8	32	44	1.76
46260670--46260763	35	2.7	34	83	5	107	14	9	30	44	1.78
46262678--46262710	16	2.1	16	100	0	66	33	6	12	48	1.65
46269160--46269185	12	2.2	12	100	0	52	42	19	7	30	1.79
46270628--46270668	21	2.0	21	90	4	66	36	0	12	51	1.40
46270837--46270873	11	3.2	12	81	11	51	59	0	5	35	1.20
46274009--46274075	33	2.0	33	100	0	134	17	19	8	53	1.70
46280205--46280239	17	2.1	17	100	0	70	48	22	11	17	1.79
46283380--46283422	17	2.4	18	80	3	52	18	2	6	72	1.19
46288086--46288277	40	4.8	40	80	7	187	25	22	27	24	2.00
46288086--46288268	79	2.3	81	82	7	214	25	22	27	24	2.00
46288139--46288303	79	2.1	79	82	6	192	26	21	27	24	1.99
46304432--46304459	6	4.7	6	100	0	56	32	50	0	17	1.47
46307411--46307467	28	2.0	28	80	12	64	47	17	0	35	1.48
46323263--46323305	21	2.0	21	86	9	59	46	4	0	48	1.22
46325285--46325323	20	1.9	21	84	5	53	25	0	28	46	1.53
46326927--46327197	86	3.2	86	82	1	283	21	16	24	37	1.93
46326917--46327197	43	6.5	43	76	3	215	21	16	24	38	1.92
46326960--46327196	129	1.8	129	80	3	280	21	15	24	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46329241--46329324	41	2.0	41	97	0	159	19	32	32	16	1.94
46329511--46329699	27	7.0	27	81	9	181	42	21	14	21	1.88
46329511--46329689	54	3.3	53	80	3	205	42	22	13	21	1.88
46329511--46329699	81	2.3	81	80	3	236	42	21	14	21	1.88
46346157--46346209	24	2.2	24	82	0	70	50	32	1	15	1.54
46350093--46350879	27	29.3	27	84	1	864	43	20	16	19	1.88
46351304--46351466	84	1.9	84	97	0	308	22	23	25	28	1.99
46351294--46351473	28	6.5	28	87	6	269	22	23	24	29	1.99
46351294--46351501	28	7.2	30	84	6	128	23	23	25	27	2.00
46360496--46360536	21	2.0	21	90	9	66	43	0	2	53	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222