genome.fa.s15.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  190  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60689170--60689239	33	2.2	33	81	2	79	34	38	5	21	1.77
60689385--60689416	14	2.2	15	94	5	57	37	31	0	31	1.58
60690507--60690746	41	5.9	41	86	0	304	27	28	21	22	1.99
60690794--60690875	39	2.1	39	86	4	112	24	20	18	36	1.95
60710180--60710320	44	3.2	44	95	0	246	29	21	22	25	1.99
60713898--60714009	42	2.7	42	92	0	188	47	17	19	15	1.83
60716000--60716108	41	2.6	41	91	1	164	26	20	29	23	1.99
60718915--60718971	11	5.1	11	76	16	55	68	3	0	28	1.06
60720749--60720819	21	3.5	20	71	5	61	53	14	11	21	1.71
60720753--60720967	42	5.0	43	77	7	222	54	12	9	22	1.66
60720777--60720966	89	2.2	85	84	9	242	55	12	9	22	1.65
60722350--60722389	21	1.9	21	90	10	55	60	2	0	37	1.11
60722612--60722648	9	4.1	9	85	0	56	43	13	13	29	1.82
60722862--60722920	29	2.0	31	86	6	86	20	40	0	38	1.53
60728907--60728944	18	2.1	18	85	14	51	52	0	0	47	1.00
60740214--60740347	40	3.4	39	78	8	137	35	23	20	20	1.96
60740469--60740498	13	2.2	14	94	5	53	20	0	26	53	1.46
60740522--60740556	15	2.4	14	86	9	52	22	0	31	45	1.53
60741341--60741483	7	20.1	7	73	8	83	17	2	40	39	1.61
60748120--60748210	43	2.1	43	87	2	130	34	10	9	45	1.73
60748559--60748676	42	2.8	43	82	6	125	22	11	27	37	1.90
60748596--60748676	43	1.9	42	87	2	117	23	12	28	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60752393--60752426	16	2.1	16	88	0	50	29	32	14	23	1.94
60755248--60755278	12	2.5	12	94	5	53	29	0	9	61	1.28
60757733--60757803	27	2.7	25	79	12	79	28	8	39	23	1.84
60758109--60758189	36	2.2	36	80	4	92	22	27	28	22	1.99
60763675--60763706	12	2.8	12	86	13	50	31	0	6	62	1.20
60763850--60763876	14	1.9	14	100	0	54	29	7	11	51	1.64
60770887--60771017	68	1.9	68	93	0	226	22	14	19	44	1.86
60771895--60771970	29	2.4	32	76	14	77	50	5	1	43	1.33
60777591--60777719	42	3.1	42	79	7	124	15	22	17	44	1.87
60783719--60783830	25	4.5	25	95	0	188	29	22	23	25	1.99
60784392--60784447	25	2.2	25	81	9	60	17	12	25	44	1.84
60786340--60786443	22	4.7	22	75	3	93	20	30	19	29	1.97
60788623--60788736	9	12.7	9	89	3	167	42	23	8	24	1.82
60790305--60790625	68	4.7	68	79	1	329	36	18	20	24	1.95
60793360--60793389	2	15.5	2	93	6	53	50	0	0	50	1.00
60794748--60794800	12	4.2	12	76	9	61	50	0	11	37	1.38
60795267--60795323	30	1.9	29	85	3	78	57	10	0	31	1.32
60797045--60797096	24	2.2	24	89	0	77	53	9	1	34	1.45
60797173--60797215	19	2.4	18	82	14	54	69	4	4	20	1.25
60797739--60797948	101	2.1	102	93	1	359	57	4	4	33	1.41
60800141--60800165	3	8.3	3	100	0	50	64	0	36	0	0.94
60802027--60802111	20	4.2	19	76	14	73	52	4	2	40	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60802054--60802102	19	2.6	19	84	9	57	53	4	2	40	1.32
60802093--60802163	18	3.8	18	77	15	65	56	0	0	43	0.99
60802102--60802163	21	3.2	20	80	12	69	56	0	0	43	0.99
60802454--60802494	21	2.0	21	90	9	66	53	9	12	24	1.68
60815961--60816035	31	2.4	31	90	0	123	50	16	8	25	1.71
60819793--60819855	31	2.0	31	100	0	126	31	6	15	46	1.71
60828213--60828255	13	3.5	12	79	14	52	20	0	0	79	0.74
60828218--60828256	14	2.5	15	84	16	53	23	0	0	76	0.78
60828665--60828694	13	2.3	13	94	0	51	23	3	6	66	1.30
60829277--60829312	18	2.0	18	94	0	63	36	5	25	33	1.79
60832528--60833061	272	2.0	271	91	0	870	29	9	15	45	1.78
60834368--60834484	42	2.8	42	83	8	141	42	17	22	17	1.89
60834363--60834434	21	3.4	21	70	0	63	44	16	23	15	1.86
60842158--60842225	26	2.6	26	78	2	73	39	10	0	50	1.37
60842266--60842323	27	2.2	26	96	3	107	24	31	27	17	1.97
60842822--60842882	19	3.3	19	76	4	70	42	9	0	47	1.36
60842830--60842882	18	2.9	18	75	11	54	41	9	0	49	1.35
60843422--60843451	5	6.0	5	100	0	60	0	0	20	80	0.72
60843457--60843525	27	2.6	27	80	0	84	47	1	11	39	1.49
60846295--60846334	21	2.0	21	90	5	64	67	7	5	20	1.34
60847856--60848142	94	3.0	94	81	1	342	25	20	20	33	1.97
60847995--60848282	139	2.1	138	83	3	355	28	20	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60847917--60848670	44	16.3	44	64	18	160	27	20	19	32	1.97
60848156--60848369	94	2.3	93	82	6	243	28	17	19	33	1.95
60848338--60848644	93	3.3	93	67	15	215	27	19	21	32	1.97
60848552--60848650	43	2.3	44	80	1	110	24	20	21	34	1.97
60848251--60848693	181	2.4	183	81	6	500	27	18	20	32	1.96
60856877--60856920	22	2.0	21	86	4	61	77	6	15	0	0.97
60857687--60857723	16	2.3	16	86	13	58	40	0	0	59	0.97
60858025--60858072	22	2.4	19	86	10	60	29	6	6	58	1.47
60859520--60859574	15	3.7	15	85	0	74	18	1	69	10	1.27
60859519--60859574	18	3.1	18	81	0	58	19	1	67	10	1.29
60872546--60872580	13	2.8	12	83	8	52	25	8	11	54	1.64
60873754--60873830	38	2.0	38	97	0	145	25	19	18	36	1.94
60877036--60877195	83	2.0	81	85	3	214	40	8	5	45	1.57
60880578--60880609	17	1.9	17	93	6	57	53	0	3	43	1.16
60881550--60881589	21	1.9	21	84	0	53	35	2	7	55	1.42
60887126--60887166	22	1.9	21	85	14	57	7	4	26	60	1.43
60891056--60891097	22	1.9	22	85	0	57	23	19	11	45	1.83
60893317--60893369	21	2.5	22	84	6	65	41	20	35	1	1.64
60895570--60895863	126	2.3	125	89	4	439	28	19	17	34	1.94
60895906--60896081	98	1.8	95	89	7	257	39	16	2	41	1.61
60901344--60901397	28	1.9	28	88	0	81	48	1	5	44	1.37
60919389--60919463	36	2.1	35	87	4	107	36	28	9	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60923415--60923456	23	1.9	22	85	9	59	35	0	4	59	1.19
60924587--60924656	27	2.5	28	93	2	115	20	14	10	55	1.67
60930421--60930495	39	1.9	39	97	0	141	42	16	9	32	1.79
60937860--60937960	41	2.5	41	83	3	114	18	28	20	31	1.97
60937900--60937979	41	2.0	41	84	0	106	20	27	23	28	1.99
60943536--60943561	6	4.3	6	100	0	52	30	19	15	34	1.93
60951365--60951494	37	3.5	37	91	0	197	33	29	17	19	1.95
60961000--60961224	40	5.7	40	86	5	296	24	22	27	25	2.00
60964817--60964882	28	2.5	26	86	11	91	43	1	4	50	1.32
60974954--60975023	24	3.0	23	72	2	59	25	7	15	51	1.69
60975512--60975547	12	3.0	12	100	0	72	41	8	16	33	1.78
60979431--60979630	99	2.0	100	99	0	393	36	5	10	49	1.58
60981874--60981911	19	2.0	20	94	5	69	47	5	18	28	1.70
60982131--60982175	23	2.0	23	86	4	65	37	6	17	37	1.76
60995402--60995465	29	2.2	29	78	10	78	42	1	1	54	1.19
61006214--61006289	39	1.9	40	81	7	93	40	1	1	56	1.16
61009588--61009718	58	2.3	54	83	11	158	51	1	1	45	1.19
61009671--61009703	17	1.9	17	93	0	57	60	0	3	36	1.12
61009678--61009743	27	2.5	27	75	7	64	56	1	0	42	1.08
61017186--61017225	13	3.0	14	85	14	50	20	0	0	80	0.72
61017188--61017225	19	2.0	20	94	5	69	18	0	0	81	0.69
61017409--61017439	3	10.0	3	93	6	53	32	0	3	64	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61029746--61030713	44	22.0	45	76	4	769	27	16	26	29	1.97
61029741--61030626	132	6.7	132	91	1	1079	27	16	26	29	1.97
61030072--61030540	219	2.1	219	92	1	778	27	15	27	29	1.96
61029895--61030621	351	2.1	353	91	1	1165	27	16	27	28	1.97
61032637--61032667	3	10.0	3	93	6	53	32	0	3	64	1.09
61036010--61036066	20	2.7	21	83	8	71	45	12	10	31	1.76
61042083--61042165	37	2.2	37	80	6	94	34	7	10	46	1.66
61052579--61052612	17	2.0	17	88	0	50	50	2	0	47	1.16
61056512--61056621	55	2.0	55	100	0	220	29	14	30	25	1.95
61057462--61057524	30	2.1	30	96	0	117	57	15	3	23	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222