genome.fa.s15.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  117  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37730282--37730354	34	2.1	35	84	2	94	43	16	6	32	1.74
37731046--37731087	22	1.9	22	85	9	59	42	4	4	47	1.45
37731930--37731966	15	2.5	15	90	0	56	27	18	8	45	1.77
37732226--37732261	7	5.1	7	100	0	72	44	13	0	41	1.44
37732428--37732478	20	2.5	20	87	0	66	37	23	29	9	1.87
37742006--37742067	28	2.2	28	83	11	74	29	12	6	51	1.65
37743328--37743364	16	2.3	16	95	0	65	37	5	32	24	1.78
37743344--37743441	44	2.2	46	90	3	155	30	4	28	36	1.76
37743598--37743631	17	2.0	17	100	0	68	58	0	0	41	0.98
37743664--37743703	20	2.0	21	85	5	55	60	5	0	35	1.19
37743671--37743751	28	2.9	28	81	10	94	55	1	0	43	1.07
37743578--37743837	117	2.3	115	87	10	371	50	3	1	44	1.28
37743793--37743856	32	2.0	32	81	0	74	48	3	0	48	1.17
37749363--37749461	49	2.0	49	100	0	198	44	19	2	34	1.62
37749373--37749477	49	2.2	48	86	6	124	45	20	1	32	1.62
37749859--37750121	9	28.9	9	66	17	75	62	2	3	30	1.26
37749863--37749929	19	3.7	19	67	15	52	67	0	4	28	1.10
37749942--37749980	21	2.0	20	85	10	53	69	10	0	20	1.17
37749986--37750072	28	3.1	28	85	4	115	57	0	5	36	1.23
37750355--37750705	174	2.0	172	93	1	605	33	7	18	39	1.80
37750781--37750855	18	4.3	17	75	11	71	25	2	1	70	1.08
37750747--37750837	34	2.7	35	80	14	93	32	2	1	63	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37750746--37750836	42	2.1	43	84	9	116	31	2	1	64	1.12
37750781--37750865	9	9.4	9	77	8	59	25	2	1	70	1.06
37750829--37750865	19	1.9	19	88	0	56	21	2	2	72	1.09
37754501--37754737	84	2.8	84	94	0	393	21	17	26	34	1.96
37754500--37754733	42	5.6	40	81	8	279	21	17	26	35	1.95
37763503--37763535	16	2.1	16	88	11	50	54	0	3	42	1.15
37763502--37763546	22	2.0	22	87	8	65	53	0	4	42	1.21
37763672--37763718	10	4.6	10	80	12	51	63	0	2	34	1.06
37770516--37770541	13	2.0	13	100	0	52	30	38	0	30	1.58
37776453--37776480	8	3.5	8	100	0	56	10	14	0	75	1.06
37780564--37780603	21	1.9	21	89	0	62	47	7	2	42	1.45
37787147--37787747	47	12.6	47	93	2	968	33	8	29	29	1.86
37787147--37787747	96	6.3	94	94	1	968	33	8	29	29	1.86
37787866--37787967	37	2.8	37	95	0	177	24	18	30	26	1.98
37794311--37794725	47	8.7	47	94	2	688	29	29	8	33	1.86
37794311--37794725	96	4.4	94	95	1	688	29	29	8	33	1.86
37794311--37794704	143	2.8	143	94	2	693	29	28	8	33	1.86
37798625--37798845	40	5.8	40	82	11	293	24	28	22	24	2.00
37798775--37798833	29	2.0	29	100	0	118	20	32	23	23	1.98
37800064--37800141	37	2.1	37	85	0	102	26	30	17	24	1.97
37800260--37800398	47	3.0	47	93	0	224	28	29	7	33	1.86
37801748--37801925	27	6.6	27	80	6	164	29	28	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37801769--37801924	82	1.9	81	85	3	215	28	28	16	25	1.97
37803657--37803918	49	5.4	49	95	1	469	29	29	8	33	1.86
37803792--37803867	22	3.3	22	64	10	62	27	31	10	30	1.90
37803657--37803939	47	5.9	48	95	1	457	29	29	8	32	1.86
37812909--37813211	40	7.6	40	89	2	396	27	28	20	24	1.99
37820885--37821187	40	7.6	40	89	2	396	27	28	20	24	1.99
37838567--37838869	40	7.6	40	89	2	396	27	28	20	24	1.99
37842663--37842703	21	2.0	21	85	9	57	34	0	12	53	1.38
37847262--37847323	18	3.6	18	74	12	67	16	41	0	41	1.48
37855976--37856187	40	5.3	39	85	6	225	25	21	28	25	1.99
37855976--37856185	80	2.6	80	85	5	257	25	21	28	25	1.99
37855976--37856220	80	3.1	80	79	6	198	26	21	28	24	1.99
37859421--37859464	21	2.1	21	83	8	54	31	0	0	68	0.90
37859450--37859476	8	3.4	8	100	0	54	11	0	0	88	0.50
37866617--37866697	15	6.0	13	70	25	53	50	3	0	45	1.19
37866626--37866693	27	2.6	26	90	9	111	50	4	0	45	1.22
37874307--37874405	31	3.3	31	69	11	89	52	11	7	29	1.63
37887978--37888562	89	6.6	89	93	1	956	31	18	22	26	1.97
37888719--37888849	44	3.1	44	68	14	141	32	17	19	29	1.95
37888712--37888838	41	3.1	41	67	15	127	33	16	18	32	1.93
37888712--37888862	81	1.9	81	98	0	293	31	17	20	30	1.95
37892059--37892097	5	8.2	5	86	8	55	82	0	17	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37894413--37894501	43	2.1	42	80	2	97	30	31	16	21	1.96
37895743--37895810	18	3.5	18	69	18	55	39	8	2	48	1.49
37895759--37895827	22	3.3	22	69	19	74	37	11	1	49	1.48
37895748--37895830	41	2.0	41	100	0	166	37	9	2	50	1.48
37895751--37895814	19	3.2	19	68	20	58	37	7	3	51	1.47
37898022--37898046	10	2.5	10	100	0	50	40	8	0	52	1.31
37908845--37908879	18	1.9	18	94	0	61	17	14	5	62	1.49
37909780--37909862	35	2.4	35	81	0	103	14	14	27	43	1.84
37909876--37909936	33	1.9	32	87	12	90	11	4	34	49	1.61
37929534--37929586	21	2.5	20	84	6	61	26	3	18	50	1.64
37934387--37934442	14	3.6	16	76	18	55	46	0	1	51	1.11
37934391--37934436	14	3.1	15	87	6	58	47	0	2	50	1.13
37934515--37934552	18	2.1	19	85	5	51	31	2	7	57	1.41
37934638--37934672	17	1.9	19	88	11	56	31	2	2	62	1.24
37935073--37935196	59	2.1	59	90	3	196	20	24	14	40	1.90
37936417--37936463	18	2.6	19	83	10	62	34	10	17	38	1.84
37938246--37938279	17	2.0	17	88	0	50	8	8	0	82	0.85
37943071--37943205	46	2.9	46	83	2	155	29	25	18	26	1.98
37943063--37943219	46	3.4	45	75	6	138	28	22	18	30	1.97
37953933--37953967	10	3.5	10	92	0	61	60	5	20	14	1.54
37954544--37954827	54	5.3	54	84	3	351	19	15	24	40	1.90
37954543--37954827	81	3.6	81	82	7	350	20	15	24	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37954543--37954827	27	10.7	27	82	6	314	20	15	24	40	1.90
37962578--37962618	19	2.2	19	86	8	57	29	9	9	51	1.67
37971962--37972035	27	2.7	27	81	4	87	36	13	29	20	1.91
37991029--37991056	14	2.0	14	100	0	56	14	14	0	71	1.15
37991053--37991096	6	8.2	6	85	14	53	34	0	18	47	1.49
37991054--37991100	11	4.5	11	87	12	73	34	0	19	46	1.50
37991055--37991100	20	2.2	21	92	7	85	32	0	19	47	1.50
37991061--37991090	15	2.1	14	93	6	51	33	0	20	46	1.51
37994905--37994952	21	2.3	21	78	7	53	31	4	20	43	1.71
37995565--37995646	25	3.3	25	75	10	69	26	24	19	29	1.98
37995540--37995652	50	2.3	49	80	4	120	27	22	18	31	1.97
37995596--37995655	25	2.4	25	78	10	68	30	21	20	28	1.98
37999888--37999941	26	2.1	26	100	0	108	29	31	3	35	1.75
38007663--38007698	15	2.4	15	90	0	54	55	8	0	36	1.30
38017964--38018006	18	2.4	18	84	0	50	18	4	18	58	1.56
38019803--38019834	16	2.0	16	93	0	55	40	12	18	28	1.87
38021204--38021249	23	2.0	23	83	8	58	67	2	28	2	1.14
38037131--38037166	15	2.4	15	90	9	56	16	19	0	63	1.30
38047468--38047494	13	2.1	13	100	0	54	29	0	7	62	1.22
38047594--38047936	50	6.8	50	88	0	488	25	20	32	21	1.98
38064510--38064679	40	4.3	40	90	0	234	25	28	21	24	1.99
38064508--38064725	80	2.7	79	80	4	206	26	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38072217--38072386	40	4.3	40	83	0	198	25	30	21	23	1.99
38098101--38098340	50	4.7	49	77	6	169	23	26	21	28	1.99
38098106--38098293	100	1.9	99	82	1	232	21	27	22	29	1.99
38100553--38100647	42	2.3	42	96	0	172	29	1	25	44	1.61
38104306--38104343	16	2.2	18	86	9	53	50	10	0	39	1.37
38108551--38108583	17	1.9	17	100	0	66	42	9	0	48	1.35
38126992--38127177	99	1.9	98	82	3	230	21	26	22	29	1.99
38126987--38127224	49	4.7	49	75	9	167	23	26	21	28	1.99
38129431--38129525	42	2.3	42	96	0	172	29	1	25	44	1.61
38132257--38132308	26	1.9	26	88	7	77	40	1	0	57	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222