genome.fa.s15.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  199  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63415361--63415503	44	3.2	43	68	16	119	48	3	2	46	1.31
63415386--63415524	47	3.0	47	68	17	137	49	4	2	43	1.34
63420154--63420209	27	2.1	27	100	0	112	42	26	5	25	1.76
63423627--63423669	3	14.3	3	90	9	70	67	0	2	30	1.03
63425309--63426241	132	7.1	132	90	0	1341	24	23	19	32	1.98
63425544--63425726	44	4.2	44	63	10	104	24	25	18	32	1.97
63428326--63428354	15	2.0	15	93	6	51	0	20	0	79	0.74
63430569--63430598	15	1.9	16	93	6	53	26	36	0	36	1.57
63433892--63434024	41	3.2	41	63	19	103	24	12	15	47	1.80
63433930--63434067	43	3.3	43	62	19	108	17	15	13	53	1.73
63433892--63434096	84	2.4	84	96	0	374	22	13	15	48	1.80
63435981--63436010	6	5.0	6	100	0	60	50	16	16	16	1.79
63436060--63436087	3	9.3	3	100	0	56	32	0	0	67	0.91
63442642--63442683	22	1.9	22	85	0	57	11	14	7	66	1.43
63452518--63452628	42	2.6	42	86	0	141	18	37	22	20	1.94
63460814--63460902	44	2.0	44	82	0	106	30	26	19	23	1.98
63461332--63461367	15	2.4	15	95	0	63	36	30	22	11	1.89
63462193--63462260	21	3.3	20	85	4	84	44	19	25	11	1.84
63483871--63484051	21	8.6	21	75	2	112	43	14	22	18	1.87
63483860--63484051	42	4.6	42	83	3	228	43	15	22	18	1.87
63483874--63484051	63	2.8	63	78	4	198	43	14	22	19	1.87
63486007--63486051	15	2.7	17	80	19	51	46	6	2	44	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63486274--63486307	18	1.9	17	94	5	59	41	0	2	55	1.15
63487970--63488012	18	2.3	20	84	11	56	60	0	4	34	1.17
63490435--63490590	76	2.1	76	93	0	267	35	25	12	27	1.91
63490827--63490899	21	3.5	21	73	3	67	23	24	9	42	1.84
63491475--63491558	43	2.0	43	83	9	109	45	21	3	29	1.69
63492690--63492727	18	2.1	19	85	5	51	60	18	5	15	1.53
63495104--63495150	25	1.9	24	91	4	76	14	25	23	36	1.93
63495110--63495162	24	2.2	25	82	3	63	11	28	22	37	1.89
63497236--63497311	26	2.9	26	94	0	125	44	2	6	46	1.43
63499894--63500180	51	5.6	51	79	4	312	22	16	29	31	1.96
63499898--63500180	101	2.8	101	85	4	365	22	16	28	31	1.96
63499903--63500180	152	1.8	152	92	0	475	22	16	29	32	1.96
63506473--63506506	17	2.0	17	100	0	68	52	35	0	11	1.38
63507437--63507462	11	2.4	11	100	0	52	15	11	15	57	1.65
63508363--63508389	5	5.4	5	100	0	54	55	0	0	44	0.99
63521076--63521112	3	12.3	3	100	0	74	67	0	0	32	0.91
63521140--63521164	4	6.2	4	100	0	50	76	0	24	0	0.80
63522019--63522131	40	2.9	39	77	6	122	25	18	24	30	1.98
63521994--63522132	40	3.5	40	72	8	115	27	16	24	31	1.96
63528973--63529182	69	3.3	69	65	24	197	44	2	6	46	1.42
63528999--63529186	61	3.1	61	69	14	199	44	2	5	48	1.37
63529051--63529212	15	10.9	15	67	21	58	44	1	3	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63528993--63529218	120	1.9	120	100	0	452	43	2	5	48	1.37
63529180--63529221	15	2.7	16	82	14	52	45	0	2	52	1.13
63529366--63529457	45	2.1	44	83	2	112	35	28	5	30	1.80
63529437--63529488	16	3.2	16	94	0	95	38	34	0	26	1.57
63530002--63530192	82	2.3	82	88	0	283	25	19	26	27	1.99
63530002--63530155	41	3.8	41	94	0	281	26	21	26	25	1.99
63537894--63537960	35	1.9	34	82	8	82	5	23	4	65	1.34
63537986--63538031	5	9.0	5	81	13	58	56	0	2	41	1.11
63537986--63538031	21	2.2	20	92	3	74	56	0	2	41	1.11
63538456--63538526	35	2.0	35	100	0	142	25	19	14	40	1.89
63540436--63540489	16	3.3	15	80	15	54	50	11	7	31	1.66
63540531--63540571	21	2.0	21	90	4	66	34	12	9	43	1.75
63540535--63540614	37	2.2	37	82	13	94	41	8	8	41	1.67
63540557--63540592	17	2.2	17	90	5	56	47	8	8	36	1.64
63540574--63540616	20	2.2	19	84	12	52	39	4	6	48	1.51
63540725--63540819	23	4.2	23	82	4	122	37	11	7	43	1.69
63540798--63540832	18	1.9	18	88	0	52	48	14	11	25	1.77
63541495--63541583	24	3.7	23	76	15	90	4	14	0	80	0.85
63541505--63541551	13	3.6	13	83	11	60	4	17	0	78	0.90
63541512--63541571	22	2.8	21	72	22	54	5	16	0	78	0.92
63541503--63541582	9	9.6	9	71	24	52	3	16	0	80	0.86
63541693--63541725	15	2.2	15	94	0	57	3	6	21	69	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63542154--63542251	30	3.3	28	76	15	90	40	1	22	35	1.61
63542139--63542292	60	2.6	60	79	8	145	40	3	22	33	1.72
63542199--63542269	30	2.4	31	90	6	112	42	2	16	38	1.63
63542199--63542277	30	2.7	30	84	11	110	43	3	17	35	1.68
63542484--63544779	76	29.7	77	81	9	2022	36	18	15	28	1.92
63542486--63543212	74	9.4	77	82	12	404	36	19	15	28	1.93
63543163--63543260	48	2.0	48	100	0	196	23	26	20	29	1.99
63543085--63543335	124	2.0	125	96	1	459	29	21	18	29	1.97
63543211--63544779	76	20.0	79	90	6	2364	36	18	15	29	1.92
63543211--63544770	237	6.6	236	93	3	2653	36	18	15	29	1.92
63543211--63544779	156	10.0	155	88	7	2289	36	18	15	29	1.92
63545634--63545752	11	11.3	10	78	19	75	0	4	10	84	0.81
63545652--63545752	46	2.2	44	84	11	125	0	1	12	84	0.77
63545642--63545752	33	3.4	31	80	18	118	0	3	11	83	0.81
63545634--63545739	1	106.0	1	69	0	68	0	3	11	84	0.73
63545657--63545737	13	6.3	13	91	4	121	0	1	13	85	0.67
63553104--63553157	16	3.3	15	80	15	54	50	11	7	31	1.66
63553165--63553195	16	2.0	16	93	6	55	48	6	12	32	1.67
63553200--63553240	21	2.0	21	95	4	75	36	9	9	43	1.71
63553204--63553283	37	2.2	37	82	13	94	42	7	8	41	1.64
63553225--63553261	17	2.2	17	90	4	58	48	8	8	35	1.62
63553243--63553285	20	2.2	19	84	12	52	39	4	6	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63553397--63553490	23	4.2	23	85	5	131	38	12	7	41	1.72
63554178--63554256	24	3.2	24	73	19	83	3	17	0	78	0.90
63554178--63554224	13	3.6	13	83	11	60	4	17	0	78	0.90
63554366--63554398	15	2.2	15	94	0	57	3	6	21	69	1.24
63554810--63554965	30	5.2	29	75	14	113	39	4	22	33	1.74
63554810--63554965	59	2.6	58	76	6	143	39	4	22	33	1.74
63558347--63558373	13	2.1	13	100	0	54	37	0	0	62	0.95
63560089--63560150	19	3.2	19	78	15	65	61	6	4	27	1.41
63569027--63569072	16	2.9	16	90	0	74	39	2	34	23	1.67
63569052--63569155	43	2.5	39	76	13	109	35	3	28	31	1.75
63569283--63569324	15	2.7	16	82	14	52	52	2	0	45	1.13
63569292--63569333	15	2.9	15	82	10	52	52	0	0	47	1.00
63569286--63569578	120	2.4	121	93	2	484	49	5	2	42	1.39
63569286--63569466	59	3.0	59	70	15	181	51	5	1	41	1.32
63569321--63569504	59	3.1	59	69	20	182	48	7	1	42	1.40
63569331--63569517	61	3.1	61	70	17	199	49	7	2	41	1.43
63569619--63569679	28	2.2	28	85	5	81	50	3	0	45	1.17
63569585--63569801	91	2.4	89	86	5	299	47	4	3	45	1.40
63569619--63569761	44	3.2	42	70	20	119	48	2	2	46	1.31
63569626--63569782	47	3.4	47	68	15	128	49	3	2	43	1.34
63572867--63572942	33	2.3	33	97	0	143	35	5	15	43	1.70
63572985--63573067	37	2.2	37	93	0	139	36	8	15	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63574219--63574355	69	2.0	69	88	0	202	41	24	7	26	1.81
63584068--63584122	25	2.2	25	100	0	110	27	23	12	36	1.91
63585013--63585054	21	2.0	21	100	0	84	19	47	14	19	1.82
63608206--63608258	16	3.2	16	97	2	97	24	0	37	37	1.56
63608494--63608528	18	2.0	17	88	5	52	54	0	0	45	0.99
63608774--63609331	66	9.2	65	65	23	268	50	5	2	42	1.38
63609092--63609133	16	2.6	17	81	7	52	59	0	0	40	0.97
63609214--63609261	18	2.8	18	74	22	50	56	0	0	43	0.99
63609193--63609244	15	3.6	15	80	12	56	53	1	0	44	1.11
63608477--63609369	120	7.4	120	95	0	1486	49	5	2	43	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222