genome.fa.s15.2.7.7.80.10.50.1000.211.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  211  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66801907--66801945	6	6.5	6	90	0	51	23	0	5	71	1.05
66802155--66802219	32	2.1	32	85	2	87	23	12	10	53	1.69
66803055--66803096	18	2.3	18	87	0	57	9	26	33	30	1.88
66816992--66817030	19	1.9	19	85	10	51	20	10	33	35	1.86
66817065--66817158	42	2.3	42	83	10	115	23	6	28	41	1.79
66817969--66818014	24	1.9	24	86	0	65	43	8	0	47	1.34
66825550--66826852	216	6.0	215	88	2	1664	28	25	14	31	1.95
66825550--66827010	648	2.3	646	82	4	1651	27	25	14	31	1.95
66825654--66827046	432	3.2	423	82	5	1519	28	25	15	31	1.95
66833351--66833407	28	2.0	30	86	10	84	54	1	12	31	1.48
66833619--66833947	42	7.8	42	93	2	536	33	21	21	23	1.98
66833619--66834048	42	10.2	42	87	5	437	32	21	20	26	1.98
66834102--66834135	14	2.4	14	95	0	59	52	20	8	17	1.71
66834359--66834429	21	3.4	21	80	0	79	2	45	18	33	1.64
66834727--66834775	14	3.7	14	71	15	50	30	0	24	44	1.54
66834733--66834973	26	9.4	26	93	1	380	29	0	21	48	1.54
66834786--66834916	19	7.5	19	62	26	65	30	0	20	48	1.55
66834733--66834969	77	3.1	77	95	1	413	29	0	21	48	1.54
66835012--66835073	20	3.2	20	86	4	90	41	4	6	46	1.51
66836589--66836630	19	2.2	19	86	0	57	23	2	45	28	1.66
66836960--66837468	230	2.2	231	89	1	763	33	19	18	28	1.95
66837886--66837963	7	11.1	7	81	0	66	47	44	0	7	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66838255--66838285	15	2.0	16	93	6	55	38	45	0	16	1.47
66838551--66838599	18	2.5	21	80	9	59	26	2	10	61	1.39
66838935--66839167	112	2.1	112	82	7	278	30	24	22	22	1.99
66839148--66839246	39	2.5	38	80	9	101	14	19	22	44	1.86
66839332--66839386	27	2.0	27	100	0	110	30	3	21	43	1.70
66840593--66840643	17	3.0	17	97	0	93	39	11	13	35	1.82
66843174--66843221	21	2.2	22	78	14	55	52	0	2	45	1.12
66843415--66843467	14	3.8	15	73	16	51	52	5	1	39	1.36
66852299--66852335	12	3.0	13	84	11	51	29	40	18	10	1.85
66855198--66855228	12	2.7	11	90	9	53	29	0	0	70	0.87
66857203--66857242	21	1.9	21	90	10	64	22	10	10	57	1.61
66857539--66857577	9	4.3	9	87	9	53	48	0	0	51	1.00
66857545--66857574	8	3.6	8	95	4	51	53	0	0	46	1.00
66857545--66857577	17	1.9	17	93	0	57	51	0	0	48	1.00
66857602--66857644	18	2.4	18	76	0	50	51	2	0	46	1.13
66857602--66857641	20	2.0	20	85	4	55	47	2	0	50	1.14
66857634--66857696	18	3.5	18	74	21	60	36	0	3	60	1.13
66857634--66857687	19	2.9	18	86	13	67	37	0	3	59	1.15
66857635--66857696	28	2.3	26	77	20	65	35	0	3	61	1.12
66857634--66857687	18	2.9	19	84	13	69	37	0	3	59	1.15
66858237--66858276	19	2.1	19	85	0	53	67	5	10	17	1.37
66861617--66861780	90	1.8	90	82	0	211	35	10	28	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66869312--66869361	9	5.6	9	75	17	50	64	2	0	34	1.05
66874246--66874361	51	2.3	51	90	1	180	29	24	14	31	1.95
66879822--66879880	24	2.6	24	78	7	70	28	30	18	22	1.97
66884068--66884110	22	1.9	23	86	13	63	58	2	4	34	1.32
66888937--66888974	19	2.1	18	90	5	58	57	7	0	34	1.28
66889131--66889166	18	1.9	19	88	5	56	41	0	2	55	1.14
66889995--66890047	24	2.2	24	96	0	97	28	15	18	37	1.91
66890581--66890630	23	2.2	23	82	7	57	38	0	0	62	0.96
66901701--66901738	17	2.2	17	100	0	76	42	26	15	15	1.87
66903697--66903731	12	2.9	12	100	0	70	77	5	0	17	0.96
66904814--66904917	6	16.8	6	70	9	75	72	2	18	6	1.20
66904872--66904917	13	3.5	13	78	16	51	73	0	19	6	1.04
66904871--66904939	33	2.1	33	84	10	88	71	1	18	8	1.20
66904921--66904952	12	2.7	12	95	0	55	59	0	21	18	1.38
66909145--66909188	20	2.2	20	88	8	63	2	13	6	77	1.07
66922597--66922630	14	2.5	14	95	4	61	50	35	0	14	1.44
66924140--66924166	4	6.8	4	100	0	54	0	74	0	25	0.83
66937665--66937711	21	2.4	19	85	7	58	59	14	14	10	1.61
66937719--66937796	27	2.9	27	86	0	120	24	28	28	19	1.98
66940702--66940774	24	2.9	26	89	8	91	36	6	1	54	1.36
66940716--66940774	24	2.4	24	97	2	109	35	5	0	59	1.20
66940733--66940786	24	2.3	23	84	9	65	44	5	3	46	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66941505--66941664	4	38.8	4	72	19	82	0	29	0	69	0.98
66941489--66941673	34	5.1	35	71	21	116	0	32	0	66	1.00
66941505--66941628	39	3.3	39	76	18	127	0	26	0	71	0.96
66941485--66941673	75	2.7	69	80	13	199	0	32	0	66	1.00
66941545--66941657	59	1.9	58	85	7	147	0	30	0	68	0.96
66941485--66941663	35	4.9	38	72	19	143	0	31	0	67	0.99
66941711--66941787	27	2.9	27	88	0	109	15	24	32	27	1.95
66941836--66941894	26	2.3	26	85	5	75	50	1	6	40	1.39
66942206--66942259	16	3.4	16	94	0	90	31	0	35	33	1.58
66942238--66942347	45	2.6	44	80	9	131	35	4	28	31	1.77
66942469--66942523	25	2.2	24	81	15	60	54	1	0	43	1.10
66942698--66942758	28	2.2	28	85	5	81	50	3	0	45	1.17
66942664--66942880	91	2.4	89	85	6	299	47	4	3	45	1.38
66942698--66942840	44	3.2	42	70	20	119	48	2	2	46	1.28
66942705--66942861	47	3.4	47	68	15	128	49	3	1	44	1.31
66945779--66945827	9	5.4	9	95	0	80	24	10	26	38	1.87
66945978--66946002	12	2.1	12	100	0	50	16	24	36	24	1.94
66946925--66947017	30	3.1	30	93	1	150	24	25	6	43	1.78
66946935--66947012	15	5.2	15	70	11	70	25	23	7	43	1.80
66951596--66951703	15	7.2	15	71	12	87	26	22	7	43	1.79
66951586--66951709	30	4.1	30	93	1	203	26	24	6	42	1.78
66957012--66957101	45	2.0	45	88	0	135	23	15	15	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66962954--66962980	13	2.1	13	100	0	54	29	7	29	33	1.85
66977549--66977767	106	2.0	109	88	8	329	33	15	13	36	1.87
66979537--66979702	83	2.0	82	88	3	244	46	13	7	33	1.70
66980260--66980289	13	2.3	13	94	0	51	73	10	0	16	1.09
66980629--66980686	29	2.0	30	86	3	82	25	6	17	50	1.71
66992421--66992494	30	2.5	30	93	0	121	47	6	21	24	1.75
66992482--66992507	13	2.0	13	100	0	52	46	7	30	15	1.74
66992452--66992537	43	2.0	43	100	0	172	44	6	25	23	1.78
66992422--66992558	73	1.9	74	92	1	231	43	6	24	25	1.78
66992495--66992558	30	2.1	31	94	2	112	39	6	28	26	1.80
66997128--66997212	30	2.8	30	94	0	143	44	7	22	25	1.78
66998660--66998704	4	11.2	4	90	0	72	26	4	22	46	1.70
67001897--67001921	8	3.1	8	100	0	50	28	0	12	60	1.32
67005894--67005918	2	12.5	2	100	0	50	48	0	0	52	1.00
67006280--67006336	25	2.2	24	79	11	60	17	5	7	70	1.29
67006586--67006618	3	11.0	3	93	0	57	0	30	0	69	0.88
67026788--67026839	24	2.2	24	100	0	104	51	13	19	15	1.75
67034279--67034321	10	4.2	10	80	13	52	72	0	6	20	1.08
67034292--67034350	17	3.6	16	73	15	57	76	0	5	18	0.97
67034288--67034352	22	3.0	21	80	13	62	75	0	4	20	0.98
67041852--67041956	41	2.5	41	85	1	147	23	21	24	29	1.99
67042193--67042234	21	2.0	21	86	4	59	30	0	21	47	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67042521--67042584	28	2.2	29	83	10	87	21	0	37	40	1.54
67043769--67043849	40	2.0	40	100	0	162	24	25	9	39	1.86
67044167--67044214	25	2.0	24	88	12	71	47	2	20	29	1.61
67048828--67048915	43	2.0	43	88	0	131	27	17	25	30	1.97
67049435--67049465	16	1.9	16	93	0	53	48	9	3	38	1.52
67061800--67061837	3	12.3	3	94	5	67	68	0	0	31	0.90
67061798--67061837	19	2.1	19	100	0	80	67	0	0	32	0.91
67061803--67061835	16	2.1	16	100	0	66	69	0	0	30	0.88
67063195--67063233	20	2.0	20	89	0	60	46	2	20	30	1.64
67065488--67065523	8	4.5	8	100	0	72	50	27	11	11	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222