genome.fa.s15.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  161  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51752949--51752981	13	2.6	13	85	4	50	48	0	0	51	1.00
51752969--51753038	28	2.5	28	79	11	81	40	4	1	54	1.29
51753013--51753053	21	2.1	18	86	13	55	46	2	0	51	1.14
51753527--51753558	11	2.9	11	90	0	55	50	34	0	15	1.45
51753552--51753594	18	2.4	18	88	0	59	41	44	2	11	1.53
51753698--51753764	9	7.4	9	83	12	84	25	10	23	40	1.86
51757722--51757749	14	2.0	14	100	0	56	42	14	28	14	1.84
51757840--51757898	29	2.0	29	100	0	118	38	13	23	23	1.91
51760117--51760191	37	2.0	37	94	0	132	28	6	38	26	1.81
51761629--51761683	28	2.0	28	85	7	76	16	30	21	30	1.95
51761684--51761835	66	2.3	66	81	0	169	23	21	13	42	1.87
51761690--51761835	33	4.4	33	78	0	148	22	20	13	43	1.87
51766298--51766409	13	8.3	13	79	6	91	43	1	18	35	1.61
51774061--51774104	21	2.0	21	82	4	52	43	25	9	22	1.82
51786043--51786067	5	5.0	5	100	0	50	20	0	0	80	0.72
51786327--51786673	50	6.9	49	70	5	221	21	19	23	34	1.96
51786303--51786674	98	3.7	98	85	3	467	22	19	23	34	1.96
51788134--51788229	48	2.0	49	91	4	160	12	25	20	41	1.87
51788146--51788247	48	2.1	46	80	12	107	14	29	20	35	1.93
51789069--51789125	19	3.1	18	82	9	71	5	5	3	85	0.80
51789077--51789188	47	2.4	47	81	12	124	8	6	3	81	0.98
51789077--51789187	30	3.7	28	76	11	96	9	6	2	81	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51789075--51789146	1	72.0	1	73	0	54	5	5	2	86	0.79
51789082--51789186	12	8.9	12	73	16	69	9	5	2	81	0.94
51789082--51789185	38	2.9	37	77	17	96	9	5	2	81	0.95
51796916--51796998	42	2.0	42	88	4	123	14	25	19	40	1.89
51796937--51796998	21	3.0	21	78	0	79	14	25	19	40	1.90
51799198--51799355	59	2.7	59	82	9	205	25	24	22	27	2.00
51799198--51799375	59	3.0	58	79	11	191	24	23	21	29	1.99
51804224--51804265	16	2.8	15	89	10	52	42	0	0	57	0.99
51804231--51804265	16	2.3	15	95	5	61	40	0	0	60	0.97
51804823--51804883	31	2.0	31	87	6	79	57	3	0	39	1.15
51804814--51804933	32	3.9	29	72	13	57	59	1	0	39	1.08
51804816--51804935	21	5.9	21	84	10	126	59	1	0	39	1.08
51804816--51804935	10	11.7	10	77	15	104	59	1	0	39	1.08
51808649--51808871	40	5.6	40	83	6	213	24	20	27	27	1.99
51808649--51808873	80	2.8	79	82	7	242	24	20	28	27	1.99
51808724--51808906	79	2.3	80	81	1	217	25	20	27	26	1.99
51808649--51808906	119	2.2	120	80	4	281	25	20	27	26	1.99
51816204--51816245	14	3.1	14	86	6	59	69	0	16	14	1.20
51816203--51816245	7	6.1	7	81	8	52	69	0	16	13	1.19
51817540--51817933	128	3.1	129	89	2	589	32	19	22	25	1.98
51818059--51818437	44	8.7	44	67	11	136	29	18	24	27	1.98
51817926--51818450	217	2.4	217	86	0	710	29	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51822909--51823531	291	2.2	290	80	7	687	39	12	13	34	1.81
51823042--51823614	289	2.0	282	79	6	616	39	12	12	34	1.82
51826299--51826332	17	2.0	17	88	0	50	55	8	2	32	1.45
51826793--51826840	19	2.5	18	83	16	53	29	12	2	56	1.48
51838436--51838477	13	3.5	13	81	18	63	50	14	0	35	1.43
51838437--51838486	23	2.2	23	89	7	75	54	14	0	32	1.40
51842228--51842260	13	2.5	13	100	0	66	36	0	15	48	1.45
51844887--51844927	21	2.0	21	95	0	73	26	7	19	46	1.76
51846638--51846681	22	2.0	23	90	4	72	45	18	9	27	1.79
51864090--51864119	15	2.1	14	93	6	51	63	6	3	26	1.35
51864567--51864611	22	2.1	21	83	4	54	51	4	0	44	1.21
51867923--51868037	39	3.0	38	73	6	106	28	5	24	41	1.76
51875403--51876037	108	5.9	108	78	5	509	26	20	14	38	1.91
51875513--51875736	105	2.1	106	82	7	276	29	19	13	37	1.90
51875250--51876037	54	14.7	53	74	7	455	27	20	14	37	1.91
51876369--51876546	54	3.3	54	77	6	144	29	20	13	37	1.91
51877697--51877722	13	2.0	13	100	0	52	23	46	7	23	1.78
51878612--51878697	3	27.7	3	72	11	57	26	6	4	61	1.41
51878902--51878962	27	2.3	27	80	8	72	37	8	4	49	1.54
51879091--51879163	33	2.2	33	100	0	146	20	10	8	60	1.56
51879480--51879684	107	1.9	108	89	3	324	32	14	17	36	1.89
51883361--51883403	17	2.5	17	88	3	59	81	0	13	4	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51883373--51883405	11	3.0	11	87	12	50	81	0	15	3	0.80
51885491--51885995	88	5.7	88	92	0	785	28	25	22	23	1.99
51885593--51886124	132	4.0	132	72	8	443	28	25	23	22	1.99
51885681--51886303	308	2.0	308	92	0	1039	27	25	23	23	2.00
51885989--51886376	88	4.4	88	94	0	659	26	24	24	24	2.00
51885593--51886352	396	1.9	396	93	0	1295	27	25	23	24	2.00
51885773--51886215	220	2.0	220	91	0	715	27	25	23	23	1.99
51885549--51886347	44	18.2	44	66	13	290	27	24	23	24	2.00
51886379--51886780	128	3.1	128	90	0	626	32	19	21	26	1.97
51886807--51887010	113	1.9	110	84	8	283	31	19	19	29	1.96
51888479--51888576	3	31.7	3	74	10	72	26	6	4	63	1.36
51888782--51888842	27	2.3	27	80	8	72	37	8	4	49	1.54
51890263--51890429	54	3.1	54	78	6	153	24	19	18	37	1.94
51889958--51890874	452	2.0	447	81	4	1078	31	16	18	33	1.93
51890819--51890952	53	2.5	54	79	9	157	27	18	11	41	1.86
51890927--51891059	54	2.5	54	84	7	171	27	18	15	39	1.90
51891305--51891502	54	3.7	54	76	8	170	27	19	14	38	1.90
51890241--51891493	612	2.0	612	82	3	1489	30	17	17	35	1.93
51891415--51891531	54	2.2	54	79	3	128	32	19	11	36	1.87
51891573--51891703	54	2.4	55	84	3	176	25	22	16	35	1.95
51891551--51891726	54	3.3	54	77	5	153	26	22	15	35	1.94
51892386--51892560	54	3.3	53	79	4	199	24	22	15	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51891793--51892589	380	2.1	378	80	3	868	32	16	16	34	1.92
51892807--51893064	54	4.8	54	76	2	198	26	21	14	37	1.92
51892808--51893043	108	2.2	108	84	0	301	26	21	14	37	1.92
51893904--51894025	54	2.3	54	84	2	147	26	16	17	40	1.90
51894362--51894536	54	3.2	54	71	7	165	28	19	12	39	1.88
51894383--51894555	54	3.2	54	70	8	152	28	17	13	39	1.88
51894869--51895008	54	2.6	54	81	0	145	27	19	13	40	1.89
51892386--51896032	506	7.2	506	77	4	3209	30	17	17	34	1.93
51894918--51895095	54	3.3	54	81	3	169	27	22	12	37	1.91
51895398--51895528	55	2.4	54	82	2	154	27	22	12	37	1.91
51896010--51896073	29	2.2	29	85	0	83	23	18	14	43	1.86
51896041--51896190	54	2.8	54	77	6	169	30	21	12	36	1.90
51896482--51896620	54	2.6	54	79	4	136	30	22	10	35	1.88
51896574--51896676	54	1.9	54	82	4	127	32	16	14	36	1.89
51896629--51896749	54	2.2	55	81	5	131	29	20	14	35	1.92
51896659--51896809	54	2.8	53	84	3	178	29	23	13	33	1.93
51896732--51896834	54	1.9	54	87	0	152	29	21	11	37	1.89
51897141--51897345	54	3.8	54	77	1	178	27	20	13	38	1.90
51897626--51897739	54	2.1	54	83	3	140	24	13	17	44	1.84
51897941--51898049	54	2.0	54	83	3	139	26	19	16	37	1.93
51898426--51898685	54	4.8	54	75	0	187	28	17	14	40	1.89
51899021--51899303	54	5.2	54	72	5	230	26	21	14	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51898992--51899303	108	2.9	107	78	2	329	26	21	13	37	1.91
51900396--51900578	54	3.4	53	81	6	197	26	20	15	37	1.93
51900327--51900578	108	2.3	107	76	4	245	27	21	14	36	1.92
51900488--51900604	54	2.2	54	87	0	162	23	19	17	39	1.92
51900885--51901037	54	2.9	54	86	1	200	26	19	13	40	1.88
51900542--51901426	397	2.2	397	84	3	1104	31	16	17	34	1.93
51900489--51901426	396	2.4	396	83	3	1118	30	16	17	34	1.93
51901282--51901489	54	3.9	54	79	0	218	26	20	13	38	1.90
51901752--51901891	54	2.6	53	78	6	147	28	18	15	37	1.91
51901740--51902004	108	2.5	108	77	3	239	26	19	15	38	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222