genome.fa.s15.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  101  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31881538--31881594	22	2.6	22	78	10	62	38	5	3	52	1.41
31881366--31881631	142	1.9	141	92	2	453	44	4	8	43	1.53
31881986--31882027	21	2.0	21	90	0	66	23	4	0	71	1.05
31881994--31882029	10	3.5	10	85	7	54	19	2	0	77	0.88
31891520--31891572	25	2.0	27	82	13	67	24	7	15	52	1.68
31891520--31891575	27	2.1	27	81	15	64	25	7	16	51	1.69
31899085--31899142	26	2.2	27	81	6	66	31	1	1	65	1.13
31907576--31907681	55	1.9	55	90	0	167	28	6	20	44	1.77
31918196--31918363	27	6.3	27	77	8	139	20	16	21	41	1.90
31922177--31922233	24	2.4	24	85	5	71	31	22	19	26	1.98
31923218--31923242	13	1.9	13	100	0	50	84	0	8	8	0.79
31930253--31930301	22	2.2	22	85	7	64	14	6	55	24	1.62
31940075--31940377	40	7.6	40	89	2	396	27	28	20	24	1.99
31960830--31961316	50	9.6	50	87	2	645	25	21	30	21	1.99
31962823--31962873	23	2.2	23	89	6	77	41	19	9	29	1.84
31980895--31981284	51	7.7	50	80	6	383	29	24	16	29	1.96
31980896--31981284	152	2.6	151	88	2	557	29	24	16	29	1.96
31980893--31981284	101	3.9	100	78	6	396	29	24	16	29	1.96
31983216--31984504	428	3.0	428	99	0	2551	34	9	16	39	1.81
31984604--31984650	17	2.8	17	71	9	51	34	2	17	46	1.59
31986270--31986299	12	2.5	12	94	0	51	30	40	23	6	1.80
31987421--31987448	14	2.0	14	100	0	56	35	21	7	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31989205--31989237	14	2.4	14	94	0	57	33	24	15	27	1.95
32003290--32003319	14	2.1	14	93	0	51	40	0	43	16	1.48
32003871--32003918	22	2.3	22	85	7	64	60	8	4	27	1.44
32011919--32012099	28	6.5	28	97	0	310	32	28	13	25	1.93
32022394--32022556	47	3.3	47	82	12	209	32	8	28	30	1.87
32022375--32022556	102	1.8	98	90	4	292	33	7	28	30	1.85
32022531--32022581	25	2.0	25	100	0	102	41	3	23	31	1.73
32022495--32022628	72	1.9	72	96	0	250	34	7	28	29	1.85
32022548--32022777	47	4.7	47	83	7	280	32	9	30	28	1.88
32022394--32022725	174	1.9	173	94	0	592	32	8	28	30	1.87
32022618--32022725	54	2.0	54	96	0	198	31	9	28	30	1.88
32022571--32022775	101	2.0	101	89	0	311	31	9	30	28	1.89
32022896--32022973	37	2.1	37	88	4	113	25	17	30	25	1.97
32029751--32029899	40	3.7	40	85	0	190	30	16	29	22	1.96
32029752--32029902	80	1.9	80	87	0	221	30	17	29	22	1.96
32031005--32031073	35	1.9	36	88	2	104	34	28	10	26	1.89
32036486--32036567	39	2.1	39	100	0	164	21	28	4	45	1.73
32037046--32037094	20	2.5	20	93	0	80	24	32	18	24	1.97
32037059--32037096	10	3.8	10	83	13	51	28	28	15	26	1.96
32037786--32037833	21	2.3	21	82	7	53	33	4	16	45	1.67
32039621--32039685	28	2.3	28	84	7	87	66	1	18	13	1.33
32050999--32051065	28	2.4	27	76	11	64	34	22	23	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32051183--32051247	22	3.0	21	75	4	67	44	16	20	18	1.87
32051231--32051433	32	6.4	30	81	6	149	38	20	19	21	1.93
32051239--32051433	64	3.1	64	84	5	236	39	20	19	21	1.93
32051568--32051626	24	2.5	24	85	0	73	50	16	11	20	1.76
32051808--32051870	27	2.3	27	86	0	81	22	23	15	38	1.93
32052531--32052564	8	4.4	8	92	7	61	26	0	0	73	0.83
32062590--32062628	21	1.9	20	84	5	51	71	5	5	17	1.23
32075960--32077080	561	2.0	561	99	0	2224	33	18	19	29	1.95
32083415--32083439	11	2.3	11	100	0	50	28	0	0	72	0.86
32083670--32083724	23	2.4	24	72	9	60	49	0	10	40	1.38
32086815--32086843	14	2.1	14	100	0	58	27	6	20	44	1.77
32091626--32091651	8	3.2	8	100	0	52	65	0	0	34	0.93
32092358--32092415	30	1.9	30	85	0	80	50	12	8	29	1.69
32095824--32096203	47	8.1	47	94	0	625	32	9	29	28	1.88
32096322--32096400	37	2.1	37	88	4	115	25	18	30	25	1.98
32100343--32100458	53	2.2	53	82	0	142	18	31	22	27	1.97
32101670--32101720	23	2.2	23	89	0	75	43	21	7	27	1.80
32113118--32113162	22	2.0	22	83	8	56	53	0	4	42	1.21
32121853--32121896	23	1.9	23	90	0	70	27	4	25	43	1.74
32136126--32136204	37	2.1	37	88	0	113	25	30	18	25	1.98
32136322--32136371	24	2.0	24	96	3	91	28	36	8	28	1.85
32136346--32136520	96	1.8	94	95	2	314	29	30	9	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32136346--32136521	47	3.7	47	95	1	307	29	31	9	30	1.88
32144825--32144865	19	2.2	19	86	8	57	56	0	0	43	0.99
32150840--32150899	29	2.1	29	81	6	68	36	16	13	33	1.88
32152533--32152583	8	6.6	8	78	13	54	56	0	1	41	1.10
32156748--32156792	21	2.1	22	95	4	83	55	4	13	26	1.57
32161777--32162044	137	2.0	137	87	1	394	18	22	26	32	1.97
32165032--32165293	39	6.6	39	86	5	302	26	22	26	24	2.00
32173051--32173312	39	6.7	40	87	7	328	25	22	27	24	2.00
32178436--32178463	11	2.5	11	100	0	56	25	25	10	39	1.87
32181806--32181853	24	2.0	24	88	8	71	10	43	0	45	1.38
32182954--32183007	18	3.1	18	81	7	58	12	46	0	40	1.42
32185617--32185668	22	2.4	22	93	3	88	38	25	11	25	1.89
32190004--32190097	46	2.0	46	95	0	170	34	21	20	24	1.97
32192579--32192685	50	2.2	49	86	5	144	33	18	22	25	1.97
32192609--32192685	25	3.1	24	83	5	100	35	18	23	23	1.96
32195794--32196096	40	7.6	39	87	6	364	25	27	21	25	1.99
32195794--32196095	120	2.5	119	87	5	407	25	27	20	25	1.99
32200075--32200258	40	4.7	40	80	7	189	25	21	27	25	2.00
32208022--32208206	79	2.3	81	83	7	227	24	22	27	24	2.00
32208023--32208206	40	4.6	40	82	9	207	25	22	27	24	2.00
32208075--32208239	79	2.1	79	83	6	201	26	21	27	24	1.99
32210217--32210274	16	3.6	16	75	9	55	20	15	12	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32212038--32212101	31	2.1	31	100	0	128	56	9	14	20	1.65
32215128--32215168	16	2.7	16	88	7	59	51	7	0	41	1.30
32215139--32215168	10	3.0	10	95	0	51	50	6	0	43	1.28
32222214--32222238	11	2.3	11	100	0	50	44	24	0	32	1.54
32231699--32231752	20	2.7	20	73	2	54	35	5	11	48	1.62
32240876--32241064	51	3.8	51	79	7	185	29	25	15	29	1.96
32260183--32260347	82	2.0	82	100	0	330	26	19	26	27	1.99
32260731--32260755	9	2.8	9	100	0	50	60	12	0	28	1.32
32262302--32262363	25	2.4	27	76	17	69	4	35	1	58	1.29
32265546--32265592	20	2.3	20	81	0	58	23	12	34	29	1.92
32266715--32266769	21	2.6	21	82	8	76	27	36	9	27	1.87
32267764--32267790	13	2.1	13	100	0	54	29	29	11	29	1.91
32274667--32274698	15	2.1	16	94	5	57	71	0	21	6	1.07
32275137--32275166	16	1.9	15	93	6	51	20	3	33	43	1.68
32278355--32278397	19	2.2	20	88	12	63	74	4	16	4	1.16
32278355--32278398	20	2.2	20	88	8	63	75	4	15	4	1.14
32278414--32278457	18	2.3	20	84	7	56	65	2	25	6	1.28
32283085--32283109	13	1.9	13	100	0	50	32	20	16	32	1.94
32284523--32284785	47	5.6	47	90	0	391	31	7	31	29	1.86
32286796--32286941	43	3.4	43	99	0	283	23	15	34	26	1.94
32286923--32286996	29	2.6	29	89	4	105	25	16	32	25	1.96
32287439--32287535	40	2.4	40	85	0	122	24	21	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32287471--32287547	40	1.9	40	86	0	109	22	22	29	25	1.99
32290007--32290031	13	1.9	13	100	0	50	32	20	16	32	1.94
32291445--32291754	47	6.6	47	92	0	458	31	8	31	29	1.86
32294215--32294259	12	3.7	12	96	3	81	77	6	2	13	1.05
32302786--32302831	21	2.2	21	88	0	65	58	6	4	30	1.43
32304877--32304921	23	1.9	24	86	4	65	20	11	13	55	1.68
32314799--32314838	21	1.9	21	89	0	62	50	15	12	22	1.77
32317377--32317546	40	4.3	40	85	0	207	24	30	21	23	1.99
32325293--32325462	40	4.3	40	84	0	198	25	30	21	23	1.99
32325293--32325439	79	1.9	80	86	1	215	25	29	21	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222