genome.fa.s15.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  171  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54924218--54924259	15	2.8	16	85	10	61	9	33	26	30	1.88
54926744--54926791	15	3.3	15	77	11	55	14	25	33	27	1.94
54933306--54933343	20	1.9	20	94	0	67	15	21	5	57	1.57
54938075--54938124	25	2.0	25	100	0	100	28	16	16	40	1.89
54938567--54938991	69	6.2	69	80	2	341	37	20	20	22	1.95
54938636--54938991	138	2.6	138	79	1	383	37	20	19	21	1.94
54953225--54953259	10	3.6	10	92	3	54	77	8	0	14	0.99
54954188--54954225	15	2.5	15	83	8	51	71	0	13	15	1.16
54955432--54955673	86	2.8	87	87	1	351	30	22	25	21	1.99
54955432--54955678	44	5.7	44	80	2	293	29	21	26	21	1.99
54955673--54955998	88	3.7	88	88	0	483	27	23	25	23	2.00
54955675--54955881	44	4.7	44	66	16	133	27	23	25	23	2.00
54961275--54961315	20	2.0	20	90	0	64	29	24	9	36	1.87
54968462--54968493	12	2.6	13	85	14	50	56	6	0	37	1.25
54976356--54976891	285	1.9	285	94	0	957	22	18	10	47	1.79
54979691--54979962	40	6.8	40	97	0	508	24	20	30	24	1.99
54995117--54995294	27	6.6	27	82	5	171	28	29	15	26	1.96
54995138--54995293	82	1.9	81	85	3	215	28	29	16	26	1.96
55007524--55007550	14	1.9	14	100	0	54	14	25	22	37	1.93
55008650--55008706	30	1.9	30	100	0	114	35	8	28	28	1.87
55011284--55011345	30	2.1	30	84	6	81	48	9	8	33	1.65
55025961--55026021	30	2.1	30	84	3	79	49	9	8	32	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55037056--55037106	22	2.3	22	83	6	59	64	9	9	15	1.48
55046121--55046235	61	1.9	61	82	7	144	38	5	15	40	1.70
55051230--55051263	2	17.0	2	100	0	68	50	0	0	50	1.00
55066388--55066416	2	14.5	2	100	0	58	48	0	0	51	1.00
55071677--55071723	23	2.0	24	83	4	60	42	4	4	48	1.42
55075839--55076010	68	2.5	68	83	0	227	34	15	22	27	1.94
55083018--55083070	23	2.3	23	81	12	65	41	22	1	33	1.65
55085268--55085322	20	2.7	21	77	5	58	25	16	14	43	1.86
55100705--55100830	50	2.5	50	79	2	137	31	22	24	21	1.98
55116777--55116946	40	4.3	40	88	0	225	26	28	21	24	1.99
55116775--55116999	40	5.7	40	84	4	195	26	28	21	24	1.99
55133571--55133623	18	2.9	18	82	2	61	41	45	1	11	1.51
55133676--55133730	26	2.2	25	78	12	58	32	7	16	43	1.75
55133751--55133835	9	9.4	9	82	5	100	25	11	21	41	1.87
55135792--55135845	26	2.1	26	82	6	65	31	0	0	68	0.90
55147675--55147746	24	2.9	24	80	12	83	56	16	0	26	1.40
55147681--55147752	23	3.0	24	83	6	92	54	18	0	27	1.44
55147681--55147755	24	3.1	24	76	7	80	53	18	0	28	1.45
55155506--55155553	9	5.3	9	79	0	51	29	8	16	45	1.76
55155506--55155553	18	2.7	18	86	0	69	29	8	16	45	1.76
55170429--55170480	25	2.1	25	92	0	86	36	17	15	30	1.91
55177046--55177120	31	2.5	30	86	6	98	41	6	4	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55178090--55178119	16	1.9	15	93	6	51	60	3	6	30	1.39
55178490--55178614	27	4.6	27	79	4	135	20	31	27	20	1.98
55178493--55178614	54	2.3	54	85	5	167	21	31	27	19	1.97
55178855--55178884	3	10.0	3	100	0	60	33	0	0	66	0.92
55179026--55179129	45	2.3	44	90	1	163	25	4	30	39	1.76
55179039--55179146	45	2.6	43	85	10	143	29	3	30	36	1.75
55179246--55179289	19	2.3	19	88	7	63	59	2	2	36	1.23
55186376--55187781	317	4.4	318	93	1	2392	30	10	7	51	1.64
55186376--55187781	633	2.2	635	94	1	2462	30	10	7	51	1.64
55188149--55188267	24	5.5	23	71	19	103	1	29	0	68	0.99
55188139--55188292	44	3.8	41	84	13	185	1	30	0	68	0.98
55188207--55188265	5	12.4	5	76	7	52	0	33	0	66	0.92
55188209--55188284	10	7.6	10	73	18	61	0	31	0	68	0.90
55188171--55188275	14	7.5	14	71	14	74	1	27	0	70	0.98
55188139--55188283	10	15.2	9	70	22	52	1	28	0	69	0.97
55188235--55188294	28	2.1	28	81	0	66	0	35	0	65	0.93
55192170--55192309	69	2.0	70	93	5	239	37	17	17	27	1.92
55192694--55192724	16	1.9	16	100	0	62	38	0	9	51	1.35
55192823--55192870	22	2.1	23	85	11	64	56	2	8	33	1.41
55193157--55193231	3	24.3	3	78	8	71	61	4	2	32	1.28
55195591--55195628	9	4.2	9	86	0	58	42	2	36	18	1.64
55196603--55196636	16	2.1	17	88	5	52	26	29	2	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55208963--55208988	5	5.2	5	100	0	52	80	0	0	19	0.71
55209055--55209085	16	1.9	16	93	0	53	74	12	9	3	1.19
55211785--55211851	34	2.0	34	100	0	134	35	19	8	35	1.83
55220044--55220081	15	2.6	14	91	8	58	0	15	0	84	0.63
55223640--55223701	32	1.9	33	90	3	99	40	8	3	48	1.49
55226714--55226756	19	2.3	18	84	7	59	74	2	0	23	0.93
55227536--55227576	20	2.0	21	85	9	57	21	0	12	65	1.25
55231030--55231076	4	11.8	4	100	0	94	25	0	23	51	1.49
55231724--55231777	16	3.6	15	76	18	51	12	20	24	42	1.87
55232412--55232453	18	2.3	18	88	8	59	38	2	2	57	1.25
55233933--55233978	21	2.1	21	81	18	51	17	2	4	76	1.06
55237257--55237281	9	2.8	9	100	0	50	32	20	12	36	1.89
55252197--55252222	9	2.9	9	100	0	52	19	0	0	80	0.71
55252772--55252837	31	2.2	31	86	7	93	59	7	15	18	1.59
55252750--55252835	31	2.9	29	78	11	84	56	6	15	20	1.61
55259071--55259363	50	5.8	50	87	0	424	26	22	30	20	1.98
55268830--55268857	13	2.2	13	100	0	56	35	0	0	64	0.94
55269379--55269412	6	5.7	6	96	0	59	17	35	29	17	1.93
55271377--55271486	42	2.6	42	79	5	123	33	24	17	24	1.96
55273698--55273758	28	2.2	28	87	0	86	27	31	19	21	1.97
55273706--55273763	28	2.1	28	93	0	98	25	32	22	18	1.97
55274497--55274543	13	3.4	14	80	14	53	53	6	0	40	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55274649--55274693	19	2.4	19	85	7	65	64	8	0	26	1.23
55289858--55289890	17	2.0	17	88	5	50	27	6	30	36	1.81
55294590--55294652	19	3.3	19	93	0	108	33	14	25	26	1.94
55295512--55295600	27	3.3	27	90	1	133	26	24	26	21	1.99
55295701--55295793	35	2.6	34	81	6	105	31	17	18	33	1.94
55296654--55296725	36	2.1	32	82	14	83	43	0	9	47	1.36
55301768--55301835	16	4.2	16	79	7	75	27	27	2	41	1.70
55304863--55304895	5	6.6	5	92	0	57	45	0	54	0	0.99
55316435--55316468	16	2.0	18	88	11	54	29	52	0	17	1.45
55318184--55318405	111	2.0	111	88	5	333	40	13	11	34	1.82
55321325--55321372	13	3.7	13	80	0	60	31	2	27	39	1.68
55321534--55321594	28	2.1	30	85	11	83	42	1	1	54	1.20
55321534--55321594	30	2.1	28	85	11	79	42	1	1	54	1.20
55323475--55323507	14	2.4	14	94	0	57	51	15	15	18	1.77
55324623--55324671	19	2.5	20	90	3	73	36	6	14	42	1.70
55329381--55329405	8	3.1	8	100	0	50	76	0	0	24	0.80
55332475--55332514	21	1.9	21	89	0	62	35	7	15	42	1.75
55338308--55338550	28	8.8	28	85	3	253	37	16	22	23	1.93
55338308--55338544	55	4.3	56	83	6	250	37	16	21	24	1.93
55338308--55338519	82	2.6	82	84	5	205	38	15	22	24	1.92
55350047--55350077	16	1.9	16	93	0	53	25	19	22	32	1.97
55351608--55351794	41	4.6	41	84	4	191	20	29	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55351649--55351807	41	3.9	41	85	3	212	20	29	22	27	1.98
55359508--55359694	41	4.6	41	85	4	200	20	29	20	28	1.98
55359549--55359707	41	3.9	41	87	3	221	20	30	22	27	1.98
55364459--55364499	7	5.9	7	86	11	57	70	0	17	12	1.16
55364459--55364501	21	2.1	20	91	4	68	67	0	18	13	1.23
55365785--55366088	132	2.3	132	91	1	493	29	19	23	27	1.98
55365995--55366140	44	3.3	44	71	0	148	30	20	23	25	1.98
55365986--55366176	88	2.2	88	87	2	276	30	20	22	26	1.98
55366054--55366703	132	5.0	131	88	5	663	28	18	24	28	1.98
55365854--55366308	220	2.1	220	91	2	752	28	19	23	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222