genome.fa.s15.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  146  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47200963--47201001	20	2.0	19	90	5	60	41	10	10	38	1.73
47201121--47201403	17	16.4	17	70	20	144	33	13	10	42	1.78
47201291--47201335	23	2.1	21	88	12	65	44	6	11	37	1.66
47201356--47201439	35	2.3	38	81	6	102	32	11	9	46	1.73
47213275--47213828	74	7.4	73	81	10	550	29	16	19	34	1.94
47213275--47213842	151	3.8	148	84	6	630	29	16	19	34	1.94
47214179--47214290	30	3.9	30	82	9	135	34	19	4	41	1.72
47229444--47230102	226	2.9	223	81	6	731	28	16	19	35	1.93
47229444--47230086	75	8.5	75	81	7	633	28	16	19	35	1.93
47230418--47230548	30	4.4	30	83	5	158	34	18	6	41	1.75
47230441--47230555	59	1.9	59	84	8	153	33	19	7	40	1.80
47231214--47231265	15	3.2	15	79	15	59	75	0	21	3	0.97
47231218--47231274	21	2.7	20	75	8	60	77	0	19	3	0.92
47231221--47231281	15	4.2	14	76	19	63	77	0	18	4	0.95
47231599--47231630	13	2.6	12	90	9	55	84	0	15	0	0.63
47231599--47231695	29	3.2	29	71	13	79	77	4	16	2	1.02
47231658--47231694	16	2.3	16	90	0	56	86	0	10	2	0.67
47232018--47232056	20	2.0	20	94	0	69	38	7	10	43	1.67
47232307--47232367	18	3.5	17	82	12	63	32	14	8	44	1.75
47232175--47232367	17	11.2	17	70	17	114	35	12	9	41	1.76
47232175--47232367	36	5.6	34	74	16	132	35	12	9	41	1.76
47232371--47232440	17	4.2	16	71	16	54	31	11	11	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47232346--47232392	24	2.0	23	91	4	76	44	6	10	38	1.65
47232275--47232407	17	7.2	18	70	25	75	33	12	10	42	1.77
47232273--47232461	93	2.0	94	84	10	244	34	11	10	43	1.75
47239481--47239526	23	2.0	23	91	0	74	47	13	8	30	1.72
47240534--47240573	21	1.9	21	90	10	64	22	12	10	55	1.67
47240924--47240979	19	2.8	20	81	13	62	42	3	3	50	1.37
47240949--47240995	20	2.3	20	78	7	51	42	4	0	53	1.20
47241073--47241098	9	2.9	9	100	0	52	23	0	19	57	1.40
47241152--47241195	23	1.9	23	85	0	61	31	15	13	38	1.87
47241196--47241350	77	2.0	77	96	1	285	32	23	10	34	1.88
47243234--47243336	53	1.9	53	86	3	145	43	11	7	36	1.70
47245588--47245618	16	1.9	16	93	0	53	83	0	6	9	0.79
47258220--47258266	21	2.2	21	80	0	58	25	40	23	10	1.87
47261836--47262011	47	3.7	47	93	0	289	28	30	6	33	1.83
47261886--47261964	25	3.3	25	66	16	76	31	27	5	35	1.79
47269251--47269593	40	8.6	40	88	2	449	27	27	19	25	1.99
47271079--47271266	47	4.0	47	97	0	358	29	29	9	32	1.88
47275086--47275135	25	2.0	25	84	7	66	26	32	12	30	1.92
47275311--47275501	40	4.8	40	87	1	267	26	28	20	24	1.99
47275311--47275501	79	2.4	80	86	0	267	26	28	20	24	1.99
47276890--47277174	42	6.5	44	84	11	313	28	32	6	32	1.82
47276916--47276984	20	3.3	20	70	7	57	26	37	7	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47276890--47277174	86	3.3	89	83	11	351	28	32	6	32	1.82
47280974--47281023	25	2.0	25	84	7	66	26	32	12	30	1.92
47281199--47281388	40	4.8	40	88	1	267	26	28	20	24	1.99
47281199--47281388	79	2.4	79	86	3	265	26	28	20	24	1.99
47282795--47283101	47	6.5	47	95	0	515	28	29	8	32	1.87
47282843--47282921	25	3.3	25	67	16	76	30	29	6	34	1.82
47302463--47302505	22	2.0	22	100	0	86	30	18	18	32	1.95
47305567--47305616	26	1.9	26	84	8	66	52	14	14	20	1.75
47307572--47307700	9	14.0	9	69	17	61	62	2	1	33	1.17
47307589--47307668	28	2.9	27	83	12	83	62	2	1	33	1.16
47308345--47308404	24	2.5	24	81	10	68	33	1	3	61	1.22
47308803--47308837	17	2.1	17	94	0	61	37	20	5	37	1.76
47315350--47315393	22	2.0	22	95	0	79	38	0	20	40	1.53
47317476--47317528	27	1.9	28	84	3	72	56	1	0	41	1.10
47318104--47318135	9	3.4	9	95	4	55	75	0	25	0	0.81
47324250--47324293	8	5.4	8	83	5	52	81	0	9	9	0.87
47326506--47327170	88	7.6	88	87	1	951	26	22	26	24	2.00
47330547--47330576	14	2.1	14	93	0	51	63	0	3	33	1.11
47330917--47330989	34	2.1	35	90	7	114	47	12	0	39	1.41
47330917--47331000	34	2.4	34	86	5	98	45	11	2	40	1.54
47331939--47331976	19	2.0	19	89	0	58	36	28	7	26	1.84
47334057--47334200	33	4.3	33	67	13	87	28	20	15	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47334031--47334270	101	2.4	101	86	0	327	29	22	15	32	1.94
47336175--47336224	11	4.4	11	78	9	55	64	4	0	32	1.12
47336463--47336521	30	1.9	31	86	10	86	27	20	3	49	1.65
47344930--47344958	14	2.0	15	93	6	51	48	0	41	10	1.37
47345502--47345544	10	4.1	10	85	11	50	58	4	0	37	1.19
47348388--47348447	25	2.4	24	79	17	61	60	0	1	38	1.07
47351317--47351363	12	3.9	12	78	10	51	36	2	17	44	1.60
47355985--47356218	50	4.6	50	82	7	256	26	20	30	23	1.98
47355980--47356218	100	2.3	103	83	6	288	26	20	30	22	1.98
47357751--47357801	23	2.2	23	89	0	75	43	21	7	27	1.80
47361299--47361729	225	1.9	224	98	0	826	35	16	27	19	1.94
47364149--47364217	26	2.6	26	86	2	84	33	2	4	59	1.32
47364143--47364228	26	3.3	24	79	9	73	33	3	3	59	1.31
47364222--47364273	24	2.1	25	82	10	63	34	5	3	55	1.42
47365333--47365376	19	2.4	18	81	11	54	15	13	11	59	1.62
47367618--47367650	5	6.8	5	93	6	59	81	0	18	0	0.68
47367609--47367650	14	3.0	14	86	10	59	78	0	19	2	0.86
47368498--47368699	44	4.4	47	77	9	145	27	17	25	29	1.98
47368538--47369523	44	21.5	44	66	15	291	32	18	20	28	1.96
47368538--47369075	89	5.9	89	71	14	297	31	17	21	29	1.96
47368951--47369075	49	2.7	44	82	6	151	30	19	22	28	1.98
47369237--47369417	95	1.9	95	79	4	204	37	15	20	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47370950--47371052	26	4.0	26	81	9	111	32	2	3	61	1.29
47371094--47371155	26	2.5	24	82	7	79	20	0	3	75	0.94
47371094--47371186	25	3.7	25	75	9	82	21	3	3	72	1.14
47373458--47373505	23	2.1	23	100	0	96	25	4	27	43	1.72
47374959--47375014	28	1.9	30	82	7	71	42	1	1	53	1.21
47375950--47375978	11	2.7	11	94	5	51	37	0	0	62	0.96
47383583--47383611	14	2.0	15	93	6	51	48	0	41	10	1.37
47386669--47386710	20	2.1	20	90	0	66	59	16	2	21	1.48
47403558--47403606	25	2.0	24	88	4	71	14	18	26	40	1.89
47404949--47404998	24	2.1	24	88	0	73	40	18	16	26	1.90
47404956--47405268	36	8.7	36	85	0	374	38	16	13	31	1.87
47404957--47405269	108	2.9	108	86	0	428	38	16	13	31	1.87
47405375--47405431	24	2.4	24	93	0	96	28	15	28	28	1.96
47406710--47406757	9	5.1	10	76	20	50	35	0	2	62	1.07
47406700--47406766	27	2.4	27	83	13	84	29	1	1	67	1.09
47406700--47406873	30	6.2	28	72	17	80	31	1	2	65	1.12
47406746--47406809	31	2.0	32	82	8	78	25	0	3	71	1.00
47406685--47406835	29	5.4	27	70	20	80	29	1	2	65	1.17
47406824--47406880	26	2.2	27	81	6	64	40	0	1	57	1.09
47406812--47406896	27	3.1	27	75	16	68	37	1	1	60	1.12
47419259--47419308	25	2.0	25	100	0	100	36	8	16	40	1.77
47439040--47439068	15	2.0	15	93	6	51	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47439480--47439504	13	1.9	13	100	0	50	80	0	0	20	0.72
47440603--47440713	37	3.0	37	68	7	118	49	5	7	37	1.53
47440563--47440712	73	2.1	73	100	0	300	48	5	6	39	1.52
47440568--47440687	37	3.3	37	71	8	129	46	5	5	42	1.49
47440603--47440716	33	3.2	33	67	23	97	49	5	7	38	1.53
47446473--47446639	29	5.7	29	79	7	126	38	13	24	22	1.91
47446481--47446731	30	8.5	30	77	5	188	37	12	25	23	1.91
47452817--47452842	9	2.9	9	100	0	52	23	0	23	53	1.46
47455948--47455973	9	2.9	9	100	0	52	65	34	0	0	0.93
47457108--47457204	25	3.9	25	77	8	90	35	25	17	21	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222