genome.fa.s15.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  113  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36333796--36333883	43	2.0	43	82	4	106	26	14	32	26	1.95
36351346--36351408	30	2.1	30	93	0	108	47	6	11	34	1.64
36352208--36352255	14	3.4	14	88	5	78	43	6	0	50	1.27
36354176--36354246	20	3.4	21	76	17	76	50	2	2	43	1.31
36354676--36354700	9	2.8	9	100	0	50	40	0	0	60	0.97
36360536--36360600	22	3.0	22	77	8	69	46	18	16	18	1.85
36360606--36360823	32	6.9	32	87	2	298	37	21	19	21	1.94
36360622--36360823	95	2.1	96	94	0	352	37	21	19	20	1.94
36360867--36360926	27	2.2	27	82	11	70	30	21	26	21	1.99
36360999--36361076	24	3.3	23	78	5	84	50	23	5	21	1.69
36361065--36361116	26	1.9	27	84	7	70	36	19	13	30	1.90
36361098--36361483	27	14.3	27	84	1	470	25	19	17	36	1.94
36369513--36369697	79	2.3	82	83	5	227	23	27	23	24	2.00
36369494--36369697	40	5.1	40	82	5	227	23	27	23	25	2.00
36377590--36377774	40	4.7	40	82	6	207	24	27	23	25	2.00
36387347--36387439	26	3.8	24	79	13	82	23	23	19	33	1.97
36390745--36390850	40	2.7	40	83	0	140	36	17	30	15	1.91
36399540--36399583	22	2.0	21	83	12	54	40	0	0	59	0.98
36410237--36410263	14	1.9	14	100	0	54	37	22	25	14	1.93
36415036--36415084	25	2.0	25	88	8	73	38	6	18	36	1.76
36417942--36418323	47	8.1	47	92	1	620	31	9	30	28	1.89
36418442--36418520	37	2.1	37	86	4	106	26	18	29	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36420372--36420474	43	2.4	43	98	0	197	22	16	34	26	1.95
36420456--36420529	29	2.6	29	89	4	105	25	16	32	25	1.96
36420841--36421035	40	4.9	40	79	5	166	26	22	27	24	2.00
36421199--36421249	25	2.0	25	81	7	59	35	7	27	29	1.85
36424723--36425104	47	8.1	47	92	1	620	31	9	30	28	1.89
36425223--36425301	37	2.1	37	88	4	115	25	18	30	25	1.98
36442104--36442128	12	2.1	12	100	0	50	24	24	8	44	1.80
36446975--36447124	76	2.0	76	83	0	192	42	18	15	24	1.89
36447695--36447767	37	2.0	37	100	0	146	46	16	10	26	1.80
36456263--36456295	16	2.1	16	88	5	50	24	3	0	72	0.98
36467693--36468007	41	7.7	41	88	0	450	27	20	28	23	1.99
36467693--36468003	82	3.8	82	93	0	496	28	20	28	22	1.99
36469957--36469982	12	2.2	12	100	0	52	50	7	0	42	1.31
36470454--36470607	28	5.5	28	97	0	274	25	11	28	33	1.91
36470429--36470607	56	3.2	56	91	1	279	25	11	28	34	1.91
36473250--36473434	101	1.8	101	87	5	275	24	17	27	30	1.97
36473244--36473432	51	3.8	49	77	4	175	24	17	27	30	1.97
36473438--36473529	44	2.1	45	87	2	132	25	19	23	31	1.98
36475621--36475649	8	3.6	8	100	0	58	24	0	0	75	0.80
36481850--36482027	91	2.0	90	84	4	232	34	14	21	29	1.93
36484400--36484459	22	2.7	22	82	5	77	21	16	16	45	1.86
36484391--36484463	22	3.3	21	78	3	74	21	19	19	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36484390--36484477	44	2.0	44	80	8	99	20	20	20	38	1.94
36484755--36484790	17	2.1	17	89	0	54	63	0	11	25	1.27
36487073--36487163	43	2.1	43	100	0	182	25	31	21	20	1.98
36488494--36488717	40	5.6	39	84	8	235	25	21	27	25	1.99
36488494--36488717	79	2.8	79	84	8	278	25	21	27	25	1.99
36488494--36488750	79	3.2	80	81	8	235	26	21	27	25	1.99
36496413--36496597	79	2.3	81	84	7	236	24	22	27	25	2.00
36496414--36496597	40	4.6	40	83	9	216	24	22	27	25	2.00
36496414--36496630	79	2.7	79	81	7	201	25	22	27	24	2.00
36512422--36512500	37	2.1	37	90	0	122	25	31	18	24	1.98
36512619--36513263	47	13.4	47	88	4	869	29	28	8	32	1.87
36512672--36513263	194	3.1	193	95	1	1012	30	28	8	32	1.86
36512670--36513257	241	2.4	241	95	2	1033	30	28	8	32	1.86
36521788--36521835	18	2.7	18	79	20	64	45	2	12	39	1.54
36533704--36533779	39	1.9	39	83	2	98	42	17	21	19	1.90
36548574--36548639	26	2.5	26	87	0	105	24	27	22	25	2.00
36557325--36557518	51	3.8	49	79	6	199	25	17	27	28	1.98
36557336--36557468	50	2.6	50	84	1	176	24	20	26	28	1.99
36557723--36557795	37	1.9	38	86	2	103	45	2	20	31	1.65
36561900--36562067	93	1.8	92	86	1	246	35	27	14	23	1.93
36561900--36562091	93	2.1	92	84	2	242	35	26	13	23	1.92
36563121--36563176	27	2.1	27	83	6	69	39	14	8	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36569766--36569892	64	2.0	63	93	1	218	47	14	9	28	1.76
36569845--36569902	28	2.1	28	86	0	80	51	13	6	27	1.66
36574319--36574357	20	2.0	20	85	10	53	2	33	2	61	1.23
36580394--36580511	61	1.9	61	84	3	157	41	16	3	38	1.65
36590098--36590190	29	3.2	30	77	10	86	37	23	3	35	1.71
36590211--36590267	22	2.6	23	78	15	66	54	19	0	26	1.44
36590220--36590252	16	2.1	17	88	11	52	60	15	0	24	1.35
36592413--36592508	38	2.5	38	81	8	115	34	16	19	29	1.94
36592442--36592529	38	2.3	38	82	5	99	35	18	20	26	1.95
36599693--36599738	23	2.0	23	95	0	83	19	13	4	63	1.46
36608287--36608559	134	2.0	136	95	1	496	32	5	20	41	1.76
36609299--36609365	31	2.2	31	91	0	107	50	10	5	32	1.61
36614031--36614072	22	1.9	22	95	0	75	23	14	9	52	1.71
36614031--36614080	22	2.3	22	89	0	73	24	14	8	54	1.66
36618448--36618475	14	2.0	14	100	0	56	35	7	0	57	1.26
36618924--36618961	19	2.0	19	90	10	60	21	39	0	39	1.53
36628393--36628418	3	8.7	3	100	0	52	69	30	0	0	0.89
36648395--36648442	24	2.0	25	83	4	62	33	18	14	33	1.91
36648770--36648818	18	2.6	19	78	12	57	40	14	2	42	1.57
36660906--36660958	27	2.0	27	96	0	97	43	1	3	50	1.30
36661767--36661821	25	2.2	26	78	15	62	30	3	1	63	1.22
36670305--36670623	75	4.3	75	84	2	372	21	19	19	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36670346--36670482	40	3.5	40	71	9	140	20	18	21	39	1.93
36670311--36670508	35	5.4	35	64	17	96	21	18	20	39	1.93
36675992--36676118	67	1.9	67	95	3	229	19	26	7	46	1.76
36676952--36677077	66	1.9	67	86	4	184	46	7	25	19	1.77
36680884--36680941	19	2.8	20	78	19	66	77	0	15	6	0.97
36684672--36684725	16	3.4	16	89	0	81	29	0	35	35	1.58
36684939--36684980	15	2.7	16	82	14	52	52	2	0	45	1.13
36684948--36684989	15	2.9	15	82	10	52	52	0	0	47	1.00
36684974--36685161	61	3.1	61	70	14	208	48	7	1	42	1.40
36684942--36685171	120	1.9	120	100	0	460	49	6	1	41	1.40
36685058--36685109	15	3.6	15	80	12	56	53	1	0	44	1.11
36684977--36685160	59	3.1	59	67	22	175	48	7	1	41	1.41
36695923--36695977	25	2.2	25	81	12	60	49	5	1	43	1.36
36710622--36710646	7	3.6	7	100	0	50	88	0	0	12	0.53
36732423--36732687	40	6.7	40	89	5	319	27	21	26	24	2.00
36732423--36732687	119	2.2	121	82	9	330	27	21	26	24	2.00
36732424--36732720	80	3.7	76	82	9	285	27	21	26	23	1.99
36735592--36735630	21	1.9	20	89	5	60	35	0	23	41	1.55
36737506--36737557	25	2.1	25	85	0	68	53	13	7	25	1.65
36740790--36740814	3	8.3	3	100	0	50	32	0	0	68	0.90
36743249--36743281	16	2.1	16	100	0	66	6	18	18	57	1.60
36745464--36745645	79	2.3	81	82	7	212	25	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36745464--36745645	40	4.6	40	82	6	210	25	21	28	25	1.99
36745514--36745668	79	2.0	79	82	7	190	26	20	27	25	1.99
36751655--36751684	11	2.8	11	95	5	53	26	20	6	46	1.75
36755190--36755230	19	2.2	19	86	8	57	46	4	19	29	1.71
36760284--36760326	22	2.0	22	90	0	68	11	16	27	44	1.82
36760398--36760647	43	5.8	43	87	0	338	28	30	19	21	1.97
36761253--36761485	23	10.2	23	76	10	219	38	24	6	30	1.81
36763086--36763270	40	4.7	40	81	6	207	25	21	27	24	1.99
36763087--36763270	79	2.3	81	80	7	207	26	21	27	24	1.99
36764634--36764857	23	9.8	23	75	8	190	40	23	5	30	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222