genome.fa.s15.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  195  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62292923--62293096	82	2.1	82	94	0	312	36	13	20	30	1.90
62298859--62299184	46	7.6	45	79	14	359	34	14	21	29	1.93
62298895--62299049	36	4.0	36	77	15	166	36	14	20	29	1.91
62298859--62299184	82	3.9	82	84	8	433	34	14	21	29	1.93
62298859--62299184	128	2.6	126	76	10	374	34	14	21	29	1.93
62301096--62301124	13	2.1	14	93	6	51	55	13	0	31	1.39
62309740--62309957	93	2.3	92	81	3	256	23	20	14	41	1.89
62310002--62310106	38	2.7	39	83	1	140	18	24	19	38	1.93
62310887--62311005	42	2.8	42	89	2	177	33	21	21	22	1.97
62310886--62311185	84	3.6	83	78	3	240	28	21	19	30	1.98
62310888--62311196	126	2.4	126	75	3	332	28	22	19	30	1.98
62310934--62311179	42	5.8	43	84	3	250	24	21	20	32	1.97
62311505--62311560	21	2.7	21	82	0	67	3	44	19	32	1.68
62313068--62313169	13	7.5	13	73	16	73	30	9	20	39	1.85
62313359--62313387	11	2.7	11	94	5	51	27	24	10	37	1.88
62314649--62314919	84	3.2	84	92	2	479	29	20	20	29	1.98
62320785--62320842	21	2.9	19	80	17	64	56	0	10	32	1.33
62320987--62321058	24	3.1	23	84	8	101	55	6	11	26	1.60
62323113--62323152	21	1.9	21	85	10	55	27	7	25	40	1.82
62329587--62329633	24	2.0	24	86	0	67	44	0	38	17	1.48
62340532--62340573	22	1.9	22	85	9	59	57	4	7	30	1.47
62340531--62340577	22	2.3	21	78	10	53	57	4	6	31	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62351133--62351385	40	6.2	40	93	0	416	33	27	10	28	1.90
62355761--62355791	16	1.9	16	93	0	53	48	16	19	16	1.81
62362624--62362681	8	7.0	8	77	14	64	79	1	0	18	0.82
62362624--62362686	19	3.1	19	72	19	56	79	1	0	19	0.82
62363291--62363358	3	22.3	3	73	8	57	30	0	7	61	1.23
62363298--62363369	23	3.1	23	82	11	67	31	1	11	55	1.43
62363465--62363503	3	13.0	3	83	0	51	28	2	0	69	1.02
62363771--62363830	20	3.0	18	76	21	57	35	5	1	58	1.30
62363709--62363840	64	2.1	64	83	11	164	37	4	2	56	1.33
62364189--62364283	38	2.5	37	78	13	97	36	12	1	49	1.48
62370159--62370310	78	1.9	79	80	9	177	34	22	16	26	1.95
62371198--62371239	13	3.5	13	75	18	54	50	0	0	50	1.00
62371194--62371239	23	2.1	21	92	8	74	47	0	0	52	1.00
62381171--62381210	21	1.9	21	85	10	55	27	10	17	45	1.80
62383089--62383133	22	2.1	22	87	4	65	33	2	2	62	1.20
62387528--62387582	28	2.0	28	96	0	101	32	23	7	36	1.82
62395831--62395906	37	2.1	37	100	0	134	39	10	10	39	1.74
62397876--62397932	23	2.5	23	81	15	73	45	0	3	50	1.18
62397882--62397932	25	2.1	25	89	7	79	47	0	3	49	1.20
62397876--62397948	21	3.3	20	77	17	65	46	1	2	49	1.24
62398914--62398958	22	2.0	22	100	0	90	46	4	17	31	1.68
62401944--62401987	3	15.0	3	95	4	81	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62406167--62406206	16	2.6	16	88	4	55	40	0	47	12	1.41
62406155--62406199	24	1.9	23	90	4	72	40	0	46	13	1.43
62406730--62406765	19	2.0	18	89	10	56	55	5	5	33	1.46
62410204--62410241	20	1.9	20	89	10	60	60	5	0	34	1.19
62415755--62415830	24	3.2	23	76	9	73	48	0	1	50	1.09
62415769--62415812	12	3.7	11	80	14	52	52	0	2	45	1.13
62415792--62415829	14	2.4	17	87	12	55	47	0	0	52	1.00
62416599--62416651	12	4.4	12	95	0	88	35	0	7	56	1.28
62416597--62416651	6	9.2	6	85	0	74	36	0	9	54	1.32
62416805--62416868	27	2.5	27	80	12	73	39	0	26	34	1.57
62420117--62420152	19	2.0	18	89	10	56	61	5	0	33	1.19
62425057--62425087	7	4.4	7	100	0	62	45	0	25	29	1.54
62428767--62428850	3	27.7	3	75	11	64	26	4	2	66	1.23
62428809--62428850	22	1.9	22	90	0	66	26	0	4	69	1.08
62429156--62429220	22	2.9	22	78	13	62	18	4	7	69	1.31
62429339--62429738	109	3.6	110	86	5	560	30	16	19	34	1.93
62429328--62429738	219	1.9	219	90	3	666	30	16	18	34	1.93
62433062--62433098	17	2.1	18	90	5	58	29	24	0	45	1.53
62433827--62433881	7	7.6	7	82	13	67	83	0	14	1	0.73
62433827--62433874	15	3.2	15	91	5	71	85	0	14	0	0.60
62433816--62433881	22	2.9	23	84	8	82	80	0	16	3	0.84
62433837--62433874	16	2.4	16	95	4	69	86	0	13	0	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62435959--62436273	44	7.2	44	64	16	150	26	25	22	24	2.00
62435959--62436292	88	3.8	88	91	1	508	26	25	23	24	2.00
62437120--62437166	18	2.6	18	82	0	67	8	12	0	78	0.95
62437797--62437874	3	25.7	3	75	12	52	25	5	3	65	1.30
62438173--62438250	22	3.5	22	74	19	72	17	3	7	70	1.27
62438191--62438250	4	15.0	4	77	10	52	20	3	6	70	1.25
62438362--62438776	109	3.8	108	87	4	566	29	16	18	35	1.93
62438362--62438776	220	1.9	218	89	3	645	29	16	18	35	1.93
62445492--62445524	16	2.1	16	100	0	66	30	6	27	36	1.81
62455442--62455471	15	2.0	15	93	0	51	63	3	0	33	1.11
62455444--62455501	23	2.5	22	75	8	62	60	1	1	36	1.17
62457216--62457549	44	7.5	44	68	8	171	27	22	20	29	1.98
62457322--62457549	89	2.6	89	89	0	366	27	22	19	30	1.98
62457351--62457498	45	3.3	45	68	12	124	27	22	21	28	1.99
62469447--62469504	3	19.7	3	75	16	50	62	3	3	31	1.29
62469457--62469513	7	7.6	8	74	20	52	61	1	3	33	1.23
62471708--62471768	20	3.2	19	86	4	70	59	4	0	36	1.19
62471727--62471788	19	3.3	19	80	13	58	56	3	0	40	1.15
62471754--62471820	33	2.1	32	82	2	80	59	2	2	34	1.28
62473874--62473941	31	2.2	32	91	2	111	57	2	7	32	1.41
62476642--62476853	51	4.2	51	91	1	329	31	23	13	31	1.93
62476642--62476853	101	2.1	101	90	0	334	31	23	13	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62476927--62476959	17	1.9	17	88	11	50	45	21	0	33	1.52
62488650--62488698	22	2.2	23	88	3	73	59	0	0	40	0.98
62488626--62488692	10	6.5	10	70	13	55	64	1	0	34	1.03
62488654--62488705	22	2.4	22	83	0	68	59	0	0	40	0.97
62490963--62491006	16	2.7	17	86	10	65	47	0	18	34	1.49
62502758--62502819	28	2.2	28	83	11	81	67	3	4	24	1.25
62502779--62503032	9	27.6	9	66	16	83	61	2	1	33	1.22
62502855--62502913	29	2.0	29	87	9	84	64	3	0	32	1.10
62502864--62502938	27	2.7	28	80	13	93	66	2	0	30	1.05
62504061--62504093	16	2.0	17	88	5	50	45	0	9	45	1.35
62504311--62504383	30	2.6	28	75	16	69	38	1	8	52	1.40
62504465--62504526	17	3.8	17	70	20	51	37	1	1	59	1.17
62504475--62504526	17	3.2	17	75	20	58	38	0	1	59	1.08
62505070--62505103	16	2.1	16	89	10	52	8	0	2	88	0.62
62509554--62509578	13	1.9	13	100	0	50	36	0	0	64	0.94
62516201--62516253	21	2.5	21	78	0	61	33	35	3	26	1.75
62521464--62521619	84	1.9	84	82	8	201	22	17	28	31	1.96
62521449--62521619	43	4.0	43	77	8	179	21	16	28	33	1.95
62529601--62529631	15	2.1	15	93	0	53	41	22	9	25	1.84
62566427--62566470	21	2.0	21	82	8	52	43	11	0	45	1.40
62573267--62573311	15	2.9	16	75	21	51	53	0	0	46	1.00
62573271--62573319	21	2.3	21	79	6	55	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62573911--62573935	2	12.5	2	100	0	50	52	0	48	0	1.00
62580446--62580492	24	2.0	24	84	16	62	29	0	19	51	1.47
62580648--62580788	40	3.6	39	74	8	117	27	17	23	31	1.96
62583006--62583040	18	1.9	18	94	0	61	45	17	8	28	1.77
62584691--62585227	266	2.0	267	96	1	988	34	18	6	40	1.77
62588659--62588732	23	3.3	22	75	11	62	21	31	18	28	1.97
62592771--62592840	35	2.0	35	100	0	140	31	8	20	40	1.82
62604563--62604616	22	2.5	22	78	9	56	53	1	0	44	1.11
62617683--62617714	12	2.8	11	90	9	55	62	0	3	34	1.11
62619448--62619986	50	10.8	50	67	5	293	24	22	22	30	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222