genome.fa.s15.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  132  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42674044--42674068	13	1.9	13	100	0	50	64	0	0	36	0.94
42689112--42689257	28	5.2	28	74	8	118	30	23	13	32	1.93
42697839--42697904	18	3.5	19	73	20	59	25	3	6	65	1.30
42700639--42700684	20	2.3	20	84	0	56	41	0	4	54	1.20
42702727--42702775	25	2.0	25	100	0	98	48	8	16	26	1.73
42702984--42703024	21	2.0	21	85	9	57	43	2	7	46	1.44
42706996--42707167	88	2.0	88	92	0	290	31	26	4	37	1.77
42707214--42707312	27	3.6	26	78	11	101	28	20	17	34	1.95
42711416--42711451	17	2.1	17	100	0	72	50	33	5	11	1.61
42724823--42725081	46	5.6	46	83	3	288	28	21	23	26	1.99
42724823--42725083	92	2.8	91	84	4	326	29	21	22	26	1.99
42725768--42726024	129	2.0	129	96	0	469	39	19	13	27	1.89
42747452--42747583	40	3.3	40	87	3	151	24	28	21	25	1.99
42747452--42747636	79	2.3	80	81	7	207	24	27	22	25	2.00
42757866--42757990	50	2.5	48	81	3	133	28	20	28	21	1.98
42760139--42760487	174	2.0	174	99	0	689	30	4	22	42	1.72
42762673--42762742	25	2.6	27	84	6	90	40	15	21	22	1.91
42762820--42762886	27	2.5	27	87	0	89	35	13	28	22	1.92
42767035--42767066	16	2.0	16	93	0	55	25	15	0	59	1.36
42767294--42767484	51	3.8	51	78	8	219	30	27	17	24	1.97
42767290--42767476	101	1.8	102	88	3	234	31	26	17	24	1.97
42769969--42770008	18	2.2	18	100	0	80	42	15	0	42	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42772618--42772655	15	2.6	15	83	4	51	31	2	5	60	1.33
42779719--42779882	29	5.7	29	74	7	154	39	12	21	25	1.89
42779807--42779969	29	5.6	29	75	5	141	36	14	26	22	1.93
42788654--42788695	20	2.2	19	87	12	59	16	21	4	57	1.58
42789459--42789566	25	4.4	24	77	10	76	27	19	23	29	1.98
42789476--42789566	25	3.7	25	82	7	89	27	19	25	27	1.99
42797138--42797174	16	2.3	16	90	9	58	51	16	5	27	1.66
42798433--42798506	30	2.5	28	81	14	85	43	1	9	45	1.44
42799287--42799318	16	2.0	16	93	0	55	53	0	0	46	1.00
42799349--42799419	31	2.3	29	79	13	79	35	5	2	56	1.38
42800839--42800868	6	5.2	6	92	8	53	0	16	0	83	0.65
42801329--42801579	133	1.9	130	84	9	334	37	19	11	31	1.87
42803030--42803073	14	3.0	14	78	12	52	79	2	6	11	1.01
42803860--42803893	18	1.9	18	88	5	52	26	26	0	47	1.53
42804012--42804046	18	2.0	17	88	5	52	40	0	5	54	1.24
42806753--42806846	47	2.0	47	91	0	152	27	7	24	40	1.82
42811609--42811748	45	3.1	45	82	0	154	43	14	21	20	1.87
42812853--42812911	28	2.1	29	87	3	84	23	16	20	38	1.92
42812933--42813026	28	3.4	28	77	5	100	25	20	10	43	1.84
42816556--42816587	14	2.3	14	100	0	64	6	15	46	31	1.71
42821680--42821711	14	2.3	14	100	0	64	6	15	46	31	1.71
42831445--42831718	137	2.0	138	82	3	338	30	24	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42833820--42833852	16	2.1	16	100	0	66	54	21	0	24	1.45
42836734--42836818	35	2.4	36	86	7	111	24	12	20	42	1.87
42838206--42838267	29	2.1	29	87	0	88	40	11	11	37	1.77
42840646--42840698	25	2.1	25	100	0	106	26	7	26	39	1.83
42852511--42852694	29	6.3	29	84	2	226	35	10	27	26	1.90
42852536--42852725	87	2.2	87	92	0	308	35	10	28	25	1.89
42852511--42852725	29	7.4	29	81	3	146	35	10	27	25	1.89
42853278--42853311	10	3.5	10	96	4	61	29	0	20	50	1.49
42871849--42871979	67	2.0	67	95	0	235	21	17	32	28	1.96
42875798--42875842	20	2.5	17	76	16	54	35	4	20	40	1.72
42875801--42875840	20	2.0	20	95	0	71	32	5	17	45	1.70
42876196--42876432	23	10.3	23	84	3	282	21	14	18	45	1.85
42879655--42879692	18	2.1	19	90	5	60	81	0	0	18	0.69
42880768--42880834	20	3.4	20	95	2	118	52	8	2	35	1.48
42880762--42880866	20	5.2	20	85	6	115	54	5	1	38	1.35
42881015--42881045	16	1.9	16	93	0	53	35	6	9	48	1.62
42896540--42896762	39	5.7	40	86	8	275	25	22	27	25	2.00
42896540--42896762	79	2.8	81	84	9	291	25	22	27	25	2.00
42896592--42896795	79	2.6	79	82	9	206	25	21	27	25	1.99
42898778--42898806	14	2.1	14	100	0	58	55	13	13	17	1.70
42899496--42899558	33	1.9	33	90	3	101	34	20	4	39	1.74
42919148--42919203	28	2.0	28	85	0	76	35	14	1	48	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42919160--42919222	13	4.7	13	75	13	56	30	12	1	55	1.47
42919104--42919258	41	3.8	42	80	7	169	35	14	2	47	1.58
42920605--42920643	20	2.0	20	90	10	62	15	23	5	56	1.59
42920836--42921030	50	3.9	50	78	0	176	22	27	21	29	1.99
42923324--42923472	74	2.0	74	98	0	289	27	19	21	31	1.97
42925131--42925178	13	3.7	12	81	13	51	43	20	0	35	1.52
42929725--42929872	40	3.8	38	86	6	172	24	30	14	31	1.94
42929703--42929928	39	5.7	39	81	4	231	22	29	15	31	1.95
42930207--42930249	23	1.9	22	86	13	61	30	4	25	39	1.76
42948112--42948379	27	9.9	27	87	4	364	41	21	17	19	1.90
42960709--42960788	24	3.5	21	74	15	70	77	2	5	15	1.04
42960764--42960793	14	2.2	13	94	5	51	80	0	0	20	0.72
42962259--42962492	50	4.7	49	76	4	175	18	27	23	30	1.97
42994218--42994273	21	2.7	21	85	0	67	12	28	32	26	1.93
42996437--42996495	30	1.9	30	83	10	75	38	6	5	49	1.52
43017032--43017087	29	1.9	29	92	0	94	30	23	16	30	1.96
43022468--43022512	21	2.1	21	84	8	56	33	4	4	57	1.38
43023007--43023037	7	4.4	7	100	0	62	45	25	0	29	1.54
43031935--43032102	47	3.6	47	96	3	304	33	7	29	29	1.84
43032070--43032125	23	2.4	23	88	11	80	39	0	28	32	1.57
43032023--43032170	68	2.2	69	92	7	257	34	5	29	31	1.80
43032368--43032469	37	2.8	37	90	0	159	25	17	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43037711--43037776	30	2.2	30	83	2	80	33	7	27	31	1.85
43038120--43038357	50	4.6	50	85	3	260	29	20	28	22	1.98
43042252--43042376	51	2.5	51	81	2	144	24	13	29	32	1.94
43042378--43042464	45	1.9	45	90	0	138	26	14	24	34	1.94
43050030--43050118	29	3.0	29	79	6	90	37	4	23	34	1.75
43052339--43052374	16	2.2	17	90	5	56	36	0	52	11	1.37
43057445--43057501	25	2.3	25	78	3	62	31	19	19	29	1.96
43060417--43060454	20	1.9	20	88	0	58	60	2	0	36	1.11
43060418--43060450	13	2.4	14	85	10	50	60	3	0	36	1.12
43063208--43063237	16	1.9	16	93	6	53	60	0	10	30	1.30
43063205--43063247	14	3.0	13	81	18	50	60	0	9	30	1.28
43068948--43069045	27	3.5	28	87	2	126	27	13	27	31	1.94
43068976--43069059	27	3.0	27	84	5	78	30	11	23	33	1.91
43076996--43077093	27	3.5	28	87	2	126	26	12	28	32	1.92
43077024--43077106	27	3.0	27	85	5	87	30	10	25	33	1.90
43076996--43077107	28	4.0	27	81	6	89	28	11	25	33	1.91
43092319--43092535	39	5.6	39	88	4	330	47	16	3	32	1.62
43092319--43092535	78	2.8	78	95	0	389	47	16	3	32	1.62
43098705--43098828	28	4.5	28	87	3	180	31	22	25	20	1.98
43098964--43099006	20	2.2	20	91	0	68	25	13	11	48	1.77
43099623--43099673	26	2.0	26	92	0	84	39	27	19	13	1.90
43099826--43100021	27	7.3	26	79	5	194	17	19	18	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43099826--43100021	54	3.7	53	83	3	232	17	19	18	43	1.88
43099826--43100021	81	2.4	80	80	7	227	17	19	18	43	1.88
43108319--43108406	41	2.1	42	81	12	110	59	4	0	36	1.18
43116387--43116582	50	3.8	50	78	4	167	29	19	27	24	1.98
43120032--43120239	27	7.7	27	78	9	140	19	17	18	44	1.87
43120033--43120231	54	3.7	53	79	4	193	18	18	19	43	1.88
43121686--43121734	26	1.9	25	95	0	80	38	16	20	24	1.92
43121924--43122261	27	12.7	27	82	6	352	19	18	20	41	1.90
43121924--43122257	107	3.1	105	83	7	417	19	18	20	41	1.90
43121925--43122261	53	6.3	53	79	9	346	19	18	20	41	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222