genome.fa.s15.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D02
Parameters: 2 7 7 80 10 50 1000
Length:  70731513

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   

This is table  148  of  222  ( 26535 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47707833--47708071	95	2.5	96	93	2	408	38	7	15	38	1.75
47708176--47708291	41	2.8	41	88	0	169	15	20	31	32	1.94
47711011--47711050	21	1.9	21	94	0	71	32	10	15	42	1.79
47713491--47713532	21	2.0	21	95	0	75	30	9	16	42	1.80
47715973--47716092	45	2.7	45	86	0	168	31	15	23	30	1.95
47715970--47716127	45	3.6	43	79	6	156	32	15	22	28	1.95
47716200--47716282	34	2.4	34	88	4	123	46	16	9	26	1.78
47716200--47716298	34	2.9	33	82	11	119	44	18	12	25	1.84
47720674--47720726	25	2.2	24	83	10	63	15	18	24	41	1.89
47729168--47729198	11	2.8	11	95	0	53	16	3	0	80	0.83
47729830--47729926	50	1.9	50	81	4	115	22	28	32	15	1.95
47735783--47735812	14	2.1	14	93	0	51	16	43	0	40	1.48
47740835--47740870	11	3.3	11	88	0	54	13	2	2	80	0.93
47745922--47745974	16	3.4	16	84	5	72	33	1	35	28	1.68
47745956--47746062	39	2.6	41	79	10	119	35	5	28	30	1.80
47746196--47746237	15	2.9	15	82	10	52	52	0	0	47	1.00
47746185--47746601	120	3.5	120	94	1	712	49	5	2	43	1.38
47746306--47746357	15	3.6	15	80	12	56	53	1	0	44	1.11
47746542--47746823	91	3.0	93	83	7	313	48	3	2	45	1.34
47746642--47746702	28	2.2	28	85	5	81	50	3	0	45	1.17
47746649--47746792	47	3.1	46	65	23	113	49	4	2	44	1.33
47746617--47746823	91	2.3	91	90	1	324	46	4	2	45	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47746642--47746784	44	3.2	43	68	16	119	48	3	2	46	1.31
47746667--47746805	47	3.0	47	68	17	137	49	4	2	43	1.34
47750467--47750505	19	2.1	19	95	0	69	43	10	46	0	1.37
47770439--47770477	20	2.0	20	84	0	51	53	0	0	46	1.00
47770450--47770518	16	4.2	16	68	15	52	44	0	2	52	1.16
47770466--47770582	61	1.9	61	87	3	173	42	0	4	52	1.27
47770566--47770604	21	1.9	20	84	5	51	38	7	7	46	1.61
47770686--47770736	25	2.0	26	81	11	61	37	7	11	43	1.71
47773319--47773357	12	3.2	12	85	7	53	74	0	7	17	1.05
47773325--47773381	16	3.6	16	81	6	64	70	0	3	26	1.03
47773323--47773365	12	3.7	11	81	9	50	72	0	4	23	1.04
47775681--47775748	26	2.6	26	95	0	118	20	25	23	30	1.98
47775688--47775765	26	3.0	26	88	5	97	23	24	20	32	1.98
47780760--47780856	41	2.6	35	79	17	115	40	11	18	29	1.86
47793613--47793656	14	2.8	16	86	10	56	31	0	4	63	1.14
47798674--47798720	16	3.2	15	80	14	62	59	2	0	38	1.09
47798802--47798857	25	2.3	25	77	17	64	51	0	1	46	1.11
47802391--47802416	13	2.0	13	100	0	52	61	15	15	7	1.55
47806704--47806768	4	15.8	4	73	23	55	24	4	0	70	1.06
47806703--47806768	14	5.2	12	79	13	71	24	4	0	71	1.05
47818121--47818341	44	4.8	45	74	8	160	32	18	20	29	1.96
47819299--47819350	27	1.9	27	88	0	77	61	3	3	30	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47819931--47820002	10	7.9	9	73	22	53	23	4	0	72	1.02
47819935--47819995	4	14.5	4	75	21	54	24	4	0	70	1.07
47819935--47820002	16	4.2	15	77	20	66	25	4	0	70	1.05
47820166--47820199	10	3.6	9	88	11	50	20	2	2	73	1.09
47827223--47827260	11	3.3	12	82	14	53	36	0	0	63	0.95
47827358--47827417	30	2.0	30	93	0	102	56	13	3	26	1.52
47834104--47834134	9	3.4	9	90	0	53	25	12	22	38	1.90
47834188--47834224	9	4.1	9	86	13	58	45	10	10	32	1.74
47836534--47836580	22	2.3	19	85	14	58	44	2	0	53	1.12
47836536--47836577	16	2.7	15	79	20	50	45	2	0	52	1.13
47847808--47847931	45	2.8	45	81	0	140	24	27	21	26	1.99
47848410--47848913	44	11.7	44	80	7	498	28	24	16	29	1.97
47848460--47848913	170	2.7	169	87	2	660	29	23	16	29	1.97
47848409--47848913	126	3.9	129	81	7	537	28	24	16	29	1.97
47848913--47849144	88	2.6	88	86	1	295	21	21	27	30	1.98
47849136--47849413	44	6.3	45	80	6	293	28	25	15	29	1.96
47849138--47849398	132	2.0	133	97	0	497	29	26	16	28	1.97
47858360--47858412	3	17.7	3	100	0	106	66	0	0	33	0.92
47859403--47859450	19	2.6	19	83	3	62	35	2	12	50	1.52
47860984--47861067	42	2.0	42	95	0	150	29	8	13	48	1.71
47862231--47862258	13	2.2	13	100	0	56	7	39	21	32	1.80
47862711--47862770	31	1.9	31	96	0	111	30	5	13	51	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47864386--47864478	46	2.0	46	100	0	186	26	17	12	43	1.85
47865981--47866107	59	2.1	60	91	4	204	48	16	12	22	1.79
47867140--47867192	25	2.1	25	85	0	70	41	16	1	39	1.60
47880642--47880671	16	1.9	15	93	6	51	13	13	10	63	1.52
47881210--47881239	2	15.0	2	92	0	51	46	0	0	53	1.00
47881239--47881265	2	13.5	2	100	0	54	51	0	48	0	1.00
47892859--47892898	20	2.0	20	85	0	53	42	20	7	30	1.79
47898049--47898116	27	2.5	27	82	0	100	41	4	10	44	1.58
47899539--47899566	13	2.2	13	100	0	56	32	17	0	50	1.47
47901606--47901642	18	2.1	18	100	0	74	62	16	5	16	1.51
47902062--47902436	184	2.0	185	91	2	610	37	9	15	38	1.79
47902279--47902313	18	1.9	18	88	0	52	42	14	20	22	1.88
47912421--47912468	9	5.3	9	74	0	51	25	29	0	45	1.53
47919181--47919209	13	2.2	13	100	0	58	68	10	6	13	1.37
47919678--47919712	15	2.4	15	90	4	54	48	0	8	42	1.33
47927679--47927733	27	2.1	26	86	3	74	30	3	5	60	1.37
47932229--47932261	12	2.8	12	86	4	50	72	21	0	6	1.05
47932247--47932355	34	3.1	34	90	4	155	70	8	11	9	1.33
47932333--47932381	6	7.7	6	93	4	53	81	0	14	4	0.83
47932345--47932381	7	5.4	7	93	6	67	86	0	13	0	0.57
47932339--47932381	13	3.2	13	90	6	68	83	0	13	2	0.74
47934057--47934194	43	3.2	43	64	17	113	30	26	21	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47933998--47934329	87	3.8	86	90	4	486	29	21	23	24	1.99
47936451--47936505	27	2.1	26	86	3	74	30	3	5	60	1.37
47945043--47945099	23	2.5	24	82	8	82	22	19	12	45	1.83
47945144--47945202	29	2.0	29	86	6	82	62	13	5	18	1.48
47957480--47957537	15	3.6	15	74	19	55	13	1	8	75	1.10
47962783--47962899	42	2.8	41	81	10	121	23	19	25	30	1.98
47975265--47975310	23	2.0	23	87	4	67	63	2	0	34	1.07
47975265--47975307	15	2.9	15	80	19	54	65	2	0	32	1.06
47979104--47979147	23	1.9	23	81	9	54	56	2	2	38	1.24
47980957--47981001	4	11.0	4	80	4	54	28	4	0	66	1.11
47986122--47986248	28	4.5	28	89	0	182	30	11	26	30	1.92
47986994--47987544	23	23.6	22	70	16	276	26	13	18	42	1.87
47986987--47987554	93	6.1	93	93	0	929	26	12	18	42	1.86
47989170--47989212	20	2.2	20	100	0	86	27	25	16	30	1.97
47992812--47992960	53	2.8	52	81	1	163	34	11	24	30	1.90
47995192--47995257	34	1.9	34	84	0	87	39	13	13	33	1.84
47996340--47996399	31	1.9	31	100	0	120	23	15	13	48	1.79
47997416--47997472	27	2.1	27	80	6	62	45	3	1	49	1.29
47998054--47998394	114	2.9	114	93	3	547	44	4	6	43	1.51
47999054--47999158	50	2.1	49	84	5	131	29	0	26	42	1.62
47999054--47999158	49	2.1	50	84	5	133	29	0	26	42	1.62
47999267--47999908	251	2.6	252	85	2	837	39	13	18	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47999260--47999916	125	5.2	126	84	1	791	39	13	18	28	1.89
48006142--48006184	15	2.9	15	80	19	54	44	9	6	39	1.64
48014134--48014381	50	4.8	50	85	4	300	20	29	23	26	1.99
48014133--48014381	100	2.4	104	88	6	355	20	29	23	26	1.99
48014476--48014507	13	2.5	13	94	0	55	56	12	0	31	1.37
48029125--48029163	10	3.8	10	83	6	51	58	2	0	38	1.12
48029404--48029525	37	3.2	37	64	19	95	39	13	9	36	1.79
48029386--48029544	79	2.0	79	98	0	309	41	12	8	37	1.74
48047164--48047312	20	7.4	20	70	8	115	16	30	16	36	1.91
48047180--48047329	20	7.5	20	75	8	144	16	33	16	34	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222